

@transform(SEQUENCEFILES, SEQUENCEFILES_REGEX, '\\1.nreads')
def countReads(infile, outfile):
    'count number of reads in input files.'
    to_cluster = True
    m = PipelineMapping.Counter()
    statement = m.build((infile,), outfile)
    P.run()

dataset/ETHPy150Open CGATOxford/cgat/obsolete/pipeline_metagenomecommunities.py countReads/original