 <p>Got help from our friends at TI E2E forums on this topic.</p> <p>The reason I was unable to see the Configure and Associate menu options was due to the selected perspective. Code Composer 5 uses TI's default CCS Edit perspective which hides the expected menu options. If you change to the default Eclipse C/C++ perspective then the menu option shows up and configuration of the project to use SonarQube can be completed.</p>