 <p>By default, Spring Boot 1.1 uses Flyway 3.0 which does not support <code>COPY FROM STDIN</code>. Support <a href="https://github.com/flyway/flyway/commit/7b9b2d141cb9ff63f6ec01baec2e46f519b19ee4" rel="nofollow">was added</a> in 3.1. You can either upgrade to Spring Boot 1.2 (which uses Flyway 3.1 by default) or stick with Spring Boot 1.1 and try overriding the version of Flyway to 3.1.</p>