 <p>Figured it out (don't ask me how). For anyone else looking for the answer, here's what I did.</p> <p>I changed this:</p> <pre><code>// Ajaxify our Internal Links $body.ajaxify(); </code></pre> <p>to this:</p> <pre><code>// Ajaxify our Internal Links $('.menuLeft,.menuRight').ajaxify(); </code></pre> <p>I kept trying to add the menu classes here without the parentheses and single quotes. Once I got those in, everything fell into place. Now, only those menus are ajaxified.</p>