ABSTRACTWe report the draft genome sequences of twoPhytobacter diazotrophicusisolates recovered from a swab specimen from the water faucet located in the Neonatal Intensive Care Unit (ICU), National University Hospital, Singapore. The isolates were misidentified asCronobacter sakazakiiandKlebsiella oxytocausing biochemical methods. Whole-genome sequencing (WGS) was performed to determine their identity.