AbstractBackgroundTo date, over 400 syndromes with hearing impairment have been identified which altogether constitute almost 30% of hereditary hearing loss (HL) cases around the globe. Manifested as complete or partial labyrinthine aplasia (severe malformations of the inner ear structure), type I microtia (smaller outer ear with shortened auricles), and microdontia (small and widely spaced teeth), labyrinthine aplasia, microtia, and microdontia (LAMM) syndrome (OMIM 610706) is an extremely rare autosomal recessive condition caused by bi‐allelic mutations in theFGF3gene.MethodsUsing the whole‐exome sequencing (WES) data of the proband, we analyzed a consanguineous Iranian family with three affected members presenting with congenital bilateral HL, type I microtia, and microdontia.ResultsWe discovered the homozygous deletion c.45delC in the first exon of theFGF3gene, overlapping a 38.72 Mb homozygosity region in chromosome 11. Further investigations using Sanger sequencing revealed that this variant co‐segregated with the phenotype observed in the family.ConclusionHere, we report the first identified case of LAMM syndrome in Iran, and by identifying a frameshift variant in the first exon of theFGF3gene, our result will help better clarify the phenotype–genotype relation of LAMM syndrome.