Maintaining motor skills is crucial for an animal’s survival, enabling it to endure diverse perturbations throughout its lifespan, such as trauma, disease, and aging. What mechanisms orchestrate brain circuit reorganization and recovery to preserve the stability of behavior despite the continued presence of a disturbance? To investigate this question, we chronically silenced a fraction of inhibitory neurons in a pre-motor circuit necessary for singing in zebra finches. This manipulation altered brain activity and severely perturbed their song, a complex learned behavior, for around two months, after which it was precisely restored. Electrophysiology recordings revealed abnormal offline dynamics resulting from chronic inhibition loss, while subsequent recovery of the behavior occurred despite partial normalization of brain activity. Single-cell RNA sequencing revealed that chronic silencing of interneurons leads to elevated levels of microglia and MHC I. These experiments demonstrate that the adult brain can overcome extended periods of drastic abnormal activity. The reactivation of mechanisms employed during learning, including offline neuronal dynamics and upregulation of MHC I and microglia, could facilitate the recovery process following perturbation of the adult brain. These findings indicate that some forms of brain plasticity may persist in a dormant state in the adult brain until they are recruited for circuit restoration.