The high rate of climate change may soon expose plants to conditions beyond their adaptation limits. Clonal plants might be particularly affected due to limited genotypic diversity of their populations, potentially decreasing their adaptability. We therefore tested the ability of a widely distributed predominantly clonally reproducing herb (Fragaria vesca) to cope with periods of drought and flooding in climatic conditions predicted to occur at the end of the twenty-first century, i.e. on average 4 °C warmer and with twice the concentration of CO2in the air (800 ppm) than the current state. We found thatF. vescacan phenotypically adjust to future climatic conditions, although its drought resistance may be reduced. Increased temperature and CO2levels in the air had a far greater effect on growth, phenology, reproduction, and gene expression than the temperature increase itself, and promoted resistance ofF. vescato repeated flooding periods. Higher temperature promoted clonal over sexual reproduction, and increased temperature and CO2concentration in the air triggered change in expression of genes controlling the level of self-pollination. We conclude thatF. vescacan acclimatise to predicted climate change, but the increased ratio of clonal to sexual reproduction and the alteration of genes involved in the self-(in)compatibility system may be associated with reduced genotypic diversity of its populations, which may negatively impact its ability to genetically adapt to novel climate in the long-term.