ThePosidonia oceanicameadows represent a fundamental biological indicator for the assessment of the marine ecosystem’s state of health. They also play an essential role in the conservation of coastal morphology. The composition, extent, and structure of the meadows are conditioned by the biological characteristics of the plant itself and by the environmental setting, considering the type and nature of the substrate, the geomorphology of the seabed, the hydrodynamics, the depth, the light availability, the sedimentation speed, etc. In this work, we present a methodology for the effective monitoring and mapping of thePosidonia oceanicameadows by means of underwater photogrammetry. To reduce the effect of environmental factors on the underwater images (e.g., the bluish or greenish effects), the workflow is enhanced through the application of two different algorithms. The 3D point cloud obtained using the restored images allowed for a better categorization of a wider area than the one made using the original image elaboration. Therefore, this work aims at presenting a photogrammetric approach for the rapid and reliable characterization of the seabed, with particular reference to the Posidonia coverage.