Animals, plants, and other organisms unintentionally or deliberately brought into a natural environment where they are not normally found, and where they cause harmful effects on that environment, are known also as invasive alien species (IAS). They represent a major threat to native biodiversity and ecosystem functioning, and can affect negatively human health and the economy. We assessed the presence and potential pressure by IAS on terrestrial and freshwater ecosystems across 27 European countries, for 66 IAS of policy concern. We computed a spatial indicator that accounts for the number of IAS present in an area and the extent of the ecosystems affected; for each ecosystem, we also looked at the pattern of invasions in the different biogeographical regions. We found disproportionally greater invasion in the Atlantic region, followed by Continental and Mediterranean regions, possibly related to historical patterns of first introductions. Urban and freshwater ecosystems were the most invaded (nearly 68% and ca. 52% of their extent respectively), followed by forest and woodland (nearly 44%). The average potential pressure of IAS was greater across cropland and forests, where we also found the lowest coefficient of variation. This assessment can be repeated over time to derive trends and monitor progress towards environmental policy objectives.