Estuaries are ecologically important areas which support a variety of aquatic species, particularly marine and estuarine fish species. This study represents a case study of the Orange River and Estuary (ORE) to understand patterns in fish assemblages and diversity trends that were compared to the revised Remane Model predictions in an estuary with poor marine fish species richness. A total of 30 species were recorded in the River continuum that comprised 14 freshwater, 10 marine and six estuarine species. Species diversity revealed seasonal variation in fish assemblages during the high-flow and low-flow seasons but not inter-annually. The results revealed that species diversity is lower in higher salinity areas when compared to low salinity areas. These patterns are consistent with the biogeographical trend of decreasing species richness along the South African coast from east to west, however, inconsistent with Remane predictions. The extremely low marine fish richness at its lower end and the extremely large freshwater influx at its upper end are the primary causes of the inconsistency. This may reflects the unsuitability of the Remane model for the Orange Estuary. In comparison to similar river-dominated South African estuaries, the ORE has a low marine species richness. When compared to more conventional South African estuaries, the ORE has a unique biotic environment with low fish species richness of estuarine-associated marine species adjacent to the Benguela upwelling zone and therefore the region does not offer suitable habitat for such species. As a result, the ORE is not a good candidate to test the Remane Model. The data does, however, confirm the left-hand part of the Remane model, which shows a decline in the fish species richness of freshwater fish species as salinity rises towards mesohaline and polyhaline levels.