Brain-derived neurotrophic factor (BDNF) promotes the survival and functioning of neurons in the central nervous system and contributes to proper functioning of many non-neural tissues. Although the regulation and role of BDNF have been extensively studied, a rigorous analysis of the expression dynamics ofBDNFand its receptorsTrkBandp75NTRis lacking. Here, we have analyzed more than 3,600 samples from 18 published RNA sequencing datasets, and used over 17,000 samples from GTEx, and ~ 180 samples from BrainSpan database, to describe the expression ofBDNFin the developing mammalian neural and non-neural tissues. We show evolutionarily conserved dynamics and expression patterns ofBDNFmRNA and non-conserved alternative 5′ exon usage. Finally, we also show increasing BDNF protein levels during murine brain development and BDNF protein expression in several non-neural tissues. In parallel, we describe the spatiotemporal expression pattern of BDNF receptorsTrkBandp75NTRin both murines and humans. Collectively, our in-depth analysis of the expression ofBDNFand its receptors gives insight into the regulation and signaling of BDNF in the whole organism throughout life.