Micro-fabrication based on structured-beam-assisted Two-Photon Polymerization (2 PP) provides a rapid and flexible method for the manufacture of microstructures with complex morphologies. The tunable Abruptly Autofocusing Vortex (AAFV) beams were designed theoretically and generated experimentally based on a single-phase-only Spatial Light Modulator (SLM). Their specific spatial intensity distributions were further utilized to assist the fabrication of a bowl-shaped Three-Dimensional (3D) micro-trap array via 2 PP with a one-step exposure technique. Finally, the fabricated microstructures act as a novel tool for the trapping and spatial positioning of micro-particles with different diameters, which shows potential applications in fiber optics and cell study.