This article is about the design, development and validation of a new monitoring architecture for individual cells and stacks to facilitate the study of proton exchange fuel cells. The system consists of four main elements: input signals, signal processing boards, analogue-to-digital converters (ADCs) and a master terminal unit (MTU). The latter integrates a high-level graphic user interface (GUI) software developed by National Instruments LABVIEW, while the ADCs are based on three digital acquisition units (DAQs). Graphs showing the temperature, currents and voltages in individual cells as well as stacks are integrated for ease of reference. The system validation was carried out both in static and dynamic modes of operation using a Ballard Nexa 1.2 kW fuel cell fed by a hydrogen cylinder, with a Prodigit 32612 electronic load at the output. The system was able to measure the voltage distributions of individual cells, and temperatures at different equidistant points of the stack both with and without an external load, validating its use as an indispensable tool for the study and characterization of these systems.