BackgroundPublic complaints concerning odor emissions from intensive livestock and poultry farms continue to grow, as nauseous odorous compounds have adverse impacts on the environment and human health. Itaconic acid is a metabolite from the citric acid cycle of the host and shows volatile odor-reducing effects during animal production operations. However, the specific role of itaconic acid in decreasing intestinal odorous compound production remains unclear. A total of 360 one-day-old chicks were randomly divided into 6 treatment groups: control group (basal diet) and itaconic acid groups (basal diet + 2, 4, 6, 8 and 10 g/kg itaconic acid). The feeding experiment lasted for 42 d.ResultsDietary itaconic acid supplementation linearly and quadratically decreased (P< 0.05) the cecal concentrations of indole and skatole but did not affect (P> 0.05) those of lactic, acetic, propionic and butyric acids. The cecal microbial shift was significant in response to 6 g/kg itaconic acid supplementation, in that the abundances of Firmicutes,RuminococcusandClostridiumwere increased (P< 0.05), while those of Bacteroidetes,Escherichia-ShigellaandBacteroideswere decreased (P< 0.05), indicative of increased microbial richness and diversity. Furthermore, a total of 35 significantly (P< 0.05) modified metabolites were obtained by metabolomic analysis. Itaconic acid decreased (P< 0.05) the levels of nicotinic acid, nicotinamide, glucose-6-phosphate, fumatic acid and malic acid and increased (P< 0.05) 5-methoxytroptomine, dodecanoic acid and stearic acid, which are connected with the glycolytic pathway, citrate acid cycle and tryptophan metabolism. Correlation analysis indicated significant correlations between the altered cecal microbiota and metabolites; Firmicutes,RuminococcusandClostridiumwere shown to be negatively correlated with indole and skatole production, while Bacteroidetes,Escherichia-ShigellaandBacteroideswere positively correlated with indole and skatole production.ConclusionsItaconic acid decreased cecal indole and skatole levels and altered the microbiome and metabolome in favor of odorous compound reduction. These findings provide new insight into the role of itaconic acid and expand its application potential in broilers.Supplementary InformationThe online version contains supplementary material available at 10.1186/s12866-023-02914-w.