	.file	"191907.c"
	.intel_syntax noprefix
	.text
	.globl	pi
	.data
	.align 8
	.type	pi, @object
	.size	pi, 8
pi:
	.long	1405670641
	.long	1074340347
	.globl	initChrom
	.section	.rodata
.LC0:
	.string	"x"
	.section	.data.rel.local,"aw"
	.align 8
	.type	initChrom, @object
	.size	initChrom, 8
initChrom:
	.quad	.LC0
	.globl	clusterChrom
	.bss
	.align 8
	.type	clusterChrom, @object
	.size	clusterChrom, 8
clusterChrom:
	.zero	8
	.globl	clusterStrand
	.align 8
	.type	clusterStrand, @object
	.size	clusterStrand, 8
clusterStrand:
	.zero	8
	.globl	clusterStart
	.data
	.align 4
	.type	clusterStart, @object
	.size	clusterStart, 4
clusterStart:
	.long	-1
	.globl	clusterEnd
	.align 4
	.type	clusterEnd, @object
	.size	clusterEnd, 4
clusterEnd:
	.long	-1
	.globl	clusterHeight
	.bss
	.align 8
	.type	clusterHeight, @object
	.size	clusterHeight, 8
clusterHeight:
	.zero	8
	.globl	readCount
	.align 4
	.type	readCount, @object
	.size	readCount, 4
readCount:
	.zero	4
	.globl	tagCount
	.align 4
	.type	tagCount, @object
	.size	tagCount, 4
tagCount:
	.zero	4
	.globl	clusterCounter
	.align 4
	.type	clusterCounter, @object
	.size	clusterCounter, 4
clusterCounter:
	.zero	4
	.globl	minblockheight
	.data
	.align 4
	.type	minblockheight, @object
	.size	minblockheight, 4
minblockheight:
	.long	2
	.globl	sizescale
	.align 8
	.type	sizescale, @object
	.size	sizescale, 8
sizescale:
	.long	-1717986918
	.long	1070176665
	.globl	merge
	.bss
	.align 4
	.type	merge, @object
	.size	merge, 4
merge:
	.zero	4
	.globl	distance
	.data
	.align 4
	.type	distance, @object
	.size	distance, 4
distance:
	.long	30
	.globl	minClusterHeight
	.align 4
	.type	minClusterHeight, @object
	.size	minClusterHeight, 4
minClusterHeight:
	.long	10
	.globl	print
	.align 4
	.type	print, @object
	.size	print, 4
print:
	.long	1
	.globl	tagFilter
	.bss
	.align 8
	.type	tagFilter, @object
	.size	tagFilter, 8
tagFilter:
	.zero	8
	.globl	sep
	.section	.rodata
.LC1:
	.string	"\t"
	.section	.data.rel.local
	.align 8
	.type	sep, @object
	.size	sep, 8
sep:
	.quad	.LC1
	.globl	type
	.data
	.align 4
	.type	type, @object
	.size	type, 4
type:
	.long	1
	.section	.rodata
.LC2:
	.string	"-scale"
.LC3:
	.string	"-minBlockHeight"
.LC4:
	.string	"-merge"
.LC5:
	.string	"-distance"
.LC6:
	.string	"-minClusterHeight"
.LC7:
	.string	"-tagFilter"
.LC8:
	.string	"-print"
.LC9:
	.string	"-format"
.LC10:
	.string	"-h"
	.text
	.globl	main
	.type	main, @function
main:
.LFB6:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 32
	mov	DWORD PTR -20[rbp], edi
	mov	QWORD PTR -32[rbp], rsi
	mov	edi, 3
	call	malloc@PLT
	mov	QWORD PTR clusterChrom[rip], rax
	mov	rdx, QWORD PTR initChrom[rip]
	mov	rax, QWORD PTR clusterChrom[rip]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	edi, 3
	call	malloc@PLT
	mov	QWORD PTR clusterStrand[rip], rax
	mov	rdx, QWORD PTR initChrom[rip]
	mov	rax, QWORD PTR clusterChrom[rip]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	cmp	DWORD PTR -20[rbp], 1
	jne	.L2
	call	printUsage
	mov	edi, 0
	call	exit@PLT
.L2:
	mov	DWORD PTR -4[rbp], -1
	mov	DWORD PTR -8[rbp], 1
	jmp	.L3
.L13:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC2[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L4
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR sizescale[rip], rax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L4:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC3[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L5
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR minblockheight[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L5:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC4[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L6
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR merge[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L6:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L7
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR distance[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L7:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC6[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L8
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR minClusterHeight[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L8:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC7[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L9
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, eax
	movsd	QWORD PTR tagFilter[rip], xmm0
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L9:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC8[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L10
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR print[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L10:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC9[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L11
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	add	rax, 1
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR type[rip], eax
	mov	eax, DWORD PTR -8[rbp]
	add	eax, 1
	mov	DWORD PTR -4[rbp], eax
.L11:
	mov	eax, DWORD PTR -8[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC10[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L12
	call	printUsage
	mov	edi, 0
	call	exit@PLT
.L12:
	add	DWORD PTR -8[rbp], 1
.L3:
	mov	eax, DWORD PTR -8[rbp]
	cmp	eax, DWORD PTR -20[rbp]
	jl	.L13
	mov	eax, DWORD PTR -20[rbp]
	sub	eax, 1
	cmp	DWORD PTR -4[rbp], eax
	jne	.L14
	call	printUsage
	mov	edi, 0
	call	exit@PLT
.L14:
	mov	eax, DWORD PTR -20[rbp]
	cdqe
	sal	rax, 3
	lea	rdx, -8[rax]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	read_bed_file
	mov	eax, 0
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE6:
	.size	main, .-main
	.section	.rodata
.LC11:
	.string	"r"
.LC12:
	.string	"cannot open %s\n"
.LC13:
	.string	""
.LC15:
	.string	"wrong file format"
.LC16:
	.string	"|"
	.text
	.globl	read_bed_file
	.type	read_bed_file, @function
read_bed_file:
.LFB7:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 192
	mov	QWORD PTR -184[rbp], rdi
	mov	QWORD PTR -136[rbp], 0
	mov	DWORD PTR -168[rbp], -1
	mov	edi, 8
	call	malloc@PLT
	mov	QWORD PTR -128[rbp], rax
	mov	edi, 8
	call	malloc@PLT
	mov	QWORD PTR -120[rbp], rax
	mov	rdx, QWORD PTR initChrom[rip]
	mov	rax, QWORD PTR -128[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rdx, QWORD PTR initChrom[rip]
	mov	rax, QWORD PTR -120[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -184[rbp]
	lea	rsi, .LC11[rip]
	mov	rdi, rax
	call	fopen@PLT
	mov	QWORD PTR -16[rbp], rax
	cmp	QWORD PTR -16[rbp], 0
	jne	.L17
	mov	rax, QWORD PTR -184[rbp]
	mov	rsi, rax
	lea	rdi, .LC12[rip]
	mov	eax, 0
	call	printf@PLT
	jmp	.L18
.L17:
	mov	DWORD PTR -164[rbp], 0
	mov	DWORD PTR -160[rbp], 1
	lea	rax, .LC13[rip]
	mov	QWORD PTR -112[rbp], rax
	mov	rax, QWORD PTR -112[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -104[rbp], rax
	mov	rax, QWORD PTR -104[rbp]
	add	rax, 2
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -96[rbp], rax
	mov	rdx, QWORD PTR -112[rbp]
	mov	rax, QWORD PTR -96[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rdx, QWORD PTR -96[rbp]
	mov	rax, QWORD PTR -104[rbp]
	add	rdx, rax
	movzx	eax, BYTE PTR -169[rbp]
	mov	BYTE PTR [rdx], al
	mov	rax, QWORD PTR -104[rbp]
	lea	rdx, 1[rax]
	mov	rax, QWORD PTR -96[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
	jmp	.L19
.L57:
	cmp	BYTE PTR -169[rbp], 35
	jne	.L20
	cmp	DWORD PTR -160[rbp], 1
	jne	.L20
	mov	DWORD PTR -164[rbp], 1
.L20:
	cmp	BYTE PTR -169[rbp], 10
	jne	.L21
	cmp	DWORD PTR -164[rbp], 1
	je	.L21
	mov	QWORD PTR -64[rbp], 0
	movsd	xmm0, QWORD PTR .LC14[rip]
	movsd	QWORD PTR -48[rbp], xmm0
	mov	eax, DWORD PTR type[rip]
	cmp	eax, 1
	jne	.L22
	mov	rdx, QWORD PTR sep[rip]
	mov	rax, QWORD PTR -96[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strtok@PLT
	mov	QWORD PTR -40[rbp], rax
	mov	DWORD PTR -148[rbp], 0
	jmp	.L23
.L30:
	cmp	DWORD PTR -148[rbp], 0
	jne	.L24
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -88[rbp], rax
	mov	rdx, QWORD PTR -40[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L24:
	cmp	DWORD PTR -148[rbp], 1
	jne	.L25
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR -156[rbp], eax
.L25:
	cmp	DWORD PTR -148[rbp], 2
	jne	.L26
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR -152[rbp], eax
.L26:
	cmp	DWORD PTR -148[rbp], 3
	jne	.L27
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -80[rbp], rax
	mov	rdx, QWORD PTR -40[rbp]
	mov	rax, QWORD PTR -80[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L27:
	cmp	DWORD PTR -148[rbp], 4
	jne	.L28
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR -56[rbp], rax
.L28:
	cmp	DWORD PTR -148[rbp], 5
	jne	.L29
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -72[rbp], rax
	mov	rdx, QWORD PTR -40[rbp]
	mov	rax, QWORD PTR -72[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L29:
	add	DWORD PTR -148[rbp], 1
	mov	rax, QWORD PTR sep[rip]
	mov	rsi, rax
	mov	edi, 0
	call	strtok@PLT
	mov	QWORD PTR -40[rbp], rax
.L23:
	cmp	QWORD PTR -40[rbp], 0
	jne	.L30
	cmp	QWORD PTR -72[rbp], 0
	jne	.L31
	lea	rdi, .LC15[rip]
	call	puts@PLT
	call	printUsage
	mov	edi, 0
	call	exit@PLT
.L22:
	mov	eax, DWORD PTR type[rip]
	cmp	eax, 2
	jne	.L31
	mov	rdx, QWORD PTR sep[rip]
	mov	rax, QWORD PTR -96[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strtok@PLT
	mov	QWORD PTR -32[rbp], rax
	mov	DWORD PTR -144[rbp], 0
	jmp	.L32
.L39:
	cmp	DWORD PTR -144[rbp], 1
	jne	.L33
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -64[rbp], rax
	mov	rdx, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -64[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L33:
	cmp	DWORD PTR -144[rbp], 9
	jne	.L34
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -72[rbp], rax
	mov	rdx, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -72[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L34:
	cmp	DWORD PTR -144[rbp], 10
	jne	.L35
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR -156[rbp], eax
.L35:
	cmp	DWORD PTR -144[rbp], 11
	jne	.L36
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR -152[rbp], eax
.L36:
	cmp	DWORD PTR -144[rbp], 12
	jne	.L37
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -88[rbp], rax
	mov	rdx, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L37:
	cmp	DWORD PTR -144[rbp], 14
	jne	.L38
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR -48[rbp], rax
.L38:
	add	DWORD PTR -144[rbp], 1
	mov	rax, QWORD PTR sep[rip]
	mov	rsi, rax
	mov	edi, 0
	call	strtok@PLT
	mov	QWORD PTR -32[rbp], rax
.L32:
	cmp	QWORD PTR -32[rbp], 0
	jne	.L39
	mov	rax, QWORD PTR -64[rbp]
	lea	rsi, .LC16[rip]
	mov	rdi, rax
	call	strtok@PLT
	mov	QWORD PTR -24[rbp], rax
	mov	DWORD PTR -140[rbp], 0
	jmp	.L40
.L43:
	cmp	DWORD PTR -140[rbp], 0
	jne	.L41
	mov	rax, QWORD PTR -24[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -80[rbp], rax
	mov	rdx, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR -80[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L41:
	cmp	DWORD PTR -140[rbp], 1
	jne	.L42
	mov	rax, QWORD PTR -24[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR -56[rbp], rax
.L42:
	add	DWORD PTR -140[rbp], 1
	lea	rsi, .LC16[rip]
	mov	edi, 0
	call	strtok@PLT
	mov	QWORD PTR -24[rbp], rax
.L40:
	cmp	QWORD PTR -24[rbp], 0
	jne	.L43
	mov	rax, QWORD PTR -64[rbp]
	mov	rdi, rax
	call	free@PLT
	movsd	xmm0, QWORD PTR .LC14[rip]
	ucomisd	xmm0, QWORD PTR -56[rbp]
	jp	.L58
	movsd	xmm0, QWORD PTR .LC14[rip]
	comisd	xmm0, QWORD PTR -56[rbp]
	je	.L61
.L58:
	movsd	xmm0, QWORD PTR -56[rbp]
	divsd	xmm0, QWORD PTR -48[rbp]
	movsd	QWORD PTR -56[rbp], xmm0
	jmp	.L46
.L61:
	movsd	xmm0, QWORD PTR .LC17[rip]
	divsd	xmm0, QWORD PTR -48[rbp]
	movsd	QWORD PTR -56[rbp], xmm0
.L46:
	cmp	QWORD PTR -72[rbp], 0
	jne	.L31
	lea	rdi, .LC15[rip]
	call	puts@PLT
	call	printUsage
	mov	edi, 0
	call	exit@PLT
.L31:
	movsd	xmm1, QWORD PTR tagFilter[rip]
	movsd	xmm0, QWORD PTR -56[rbp]
	comisd	xmm0, xmm1
	jb	.L47
	mov	rdx, QWORD PTR -128[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L49
	mov	rdx, QWORD PTR -120[rbp]
	mov	rax, QWORD PTR -72[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L49
	mov	eax, DWORD PTR -156[rbp]
	sub	eax, DWORD PTR -168[rbp]
	mov	edx, eax
	mov	eax, DWORD PTR distance[rip]
	cmp	edx, eax
	jle	.L50
.L49:
	mov	eax, DWORD PTR minClusterHeight[rip]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR clusterHeight[rip]
	comisd	xmm0, xmm1
	jbe	.L51
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	assignReadsToBlocks
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	writeBlocks
.L51:
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	freeList
	mov	QWORD PTR -136[rbp], 0
	mov	eax, DWORD PTR -156[rbp]
	mov	DWORD PTR clusterStart[rip], eax
	mov	eax, DWORD PTR -152[rbp]
	mov	DWORD PTR clusterEnd[rip], eax
	movsd	xmm0, QWORD PTR -56[rbp]
	movsd	QWORD PTR clusterHeight[rip], xmm0
	mov	DWORD PTR tagCount[rip], 1
	jmp	.L53
.L50:
	mov	eax, DWORD PTR clusterStart[rip]
	cmp	DWORD PTR -156[rbp], eax
	jge	.L54
	mov	eax, DWORD PTR -156[rbp]
	mov	DWORD PTR clusterStart[rip], eax
.L54:
	mov	eax, DWORD PTR clusterEnd[rip]
	cmp	DWORD PTR -152[rbp], eax
	jle	.L55
	mov	eax, DWORD PTR -152[rbp]
	mov	DWORD PTR clusterEnd[rip], eax
.L55:
	movsd	xmm0, QWORD PTR clusterHeight[rip]
	addsd	xmm0, QWORD PTR -56[rbp]
	movsd	QWORD PTR clusterHeight[rip], xmm0
	mov	eax, DWORD PTR tagCount[rip]
	add	eax, 1
	mov	DWORD PTR tagCount[rip], eax
.L53:
	mov	QWORD PTR -8[rbp], 0
	mov	edi, 56
	call	malloc@PLT
	mov	QWORD PTR -8[rbp], rax
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	rdx, rax
	mov	rax, QWORD PTR -8[rbp]
	mov	QWORD PTR [rax], rdx
	mov	rax, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR [rax]
	mov	rdx, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -80[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	rdx, rax
	mov	rax, QWORD PTR -8[rbp]
	mov	QWORD PTR 32[rax], rdx
	mov	rax, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR 32[rax]
	mov	rdx, QWORD PTR -80[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -72[rbp]
	mov	rdi, rax
	call	strlen@PLT
	add	rax, 1
	mov	rdi, rax
	call	malloc@PLT
	mov	rdx, rax
	mov	rax, QWORD PTR -8[rbp]
	mov	QWORD PTR 40[rax], rdx
	mov	rax, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR 40[rax]
	mov	rdx, QWORD PTR -72[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -8[rbp]
	mov	edx, DWORD PTR -156[rbp]
	mov	DWORD PTR 8[rax], edx
	mov	rax, QWORD PTR -8[rbp]
	mov	edx, DWORD PTR -152[rbp]
	mov	DWORD PTR 12[rax], edx
	mov	rax, QWORD PTR -8[rbp]
	movsd	xmm0, QWORD PTR -56[rbp]
	movsd	QWORD PTR 24[rax], xmm0
	mov	rax, QWORD PTR -8[rbp]
	mov	DWORD PTR 16[rax], -1
	mov	rax, QWORD PTR -8[rbp]
	mov	rdx, QWORD PTR -136[rbp]
	mov	QWORD PTR 48[rax], rdx
	mov	rax, QWORD PTR -8[rbp]
	mov	QWORD PTR -136[rbp], rax
	mov	rax, QWORD PTR clusterChrom[rip]
	mov	esi, 8
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR clusterChrom[rip], rax
	mov	rax, QWORD PTR clusterChrom[rip]
	mov	rdx, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR clusterStrand[rip]
	mov	esi, 8
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR clusterStrand[rip], rax
	mov	rax, QWORD PTR clusterStrand[rip]
	mov	rdx, QWORD PTR -72[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -128[rbp]
	mov	esi, 8
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -128[rbp], rax
	mov	rdx, QWORD PTR -88[rbp]
	mov	rax, QWORD PTR -128[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	rax, QWORD PTR -120[rbp]
	mov	esi, 8
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -120[rbp], rax
	mov	rdx, QWORD PTR -72[rbp]
	mov	rax, QWORD PTR -120[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	mov	eax, DWORD PTR -152[rbp]
	mov	DWORD PTR -168[rbp], eax
.L47:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -72[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -80[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	DWORD PTR -160[rbp], 1
	mov	rax, QWORD PTR -96[rbp]
	mov	BYTE PTR [rax], 0
	mov	rax, QWORD PTR -96[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -104[rbp], rax
	jmp	.L19
.L21:
	cmp	BYTE PTR -169[rbp], 10
	jne	.L56
	cmp	DWORD PTR -164[rbp], 1
	jne	.L56
	mov	rax, QWORD PTR -112[rbp]
	mov	rdi, rax
	call	free@PLT
	lea	rax, .LC13[rip]
	mov	QWORD PTR -112[rbp], rax
	mov	DWORD PTR -164[rbp], 0
	mov	DWORD PTR -160[rbp], 1
	jmp	.L19
.L56:
	mov	rax, QWORD PTR -104[rbp]
	lea	rdx, 2[rax]
	mov	rax, QWORD PTR -96[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -96[rbp], rax
	mov	rdx, QWORD PTR -96[rbp]
	mov	rax, QWORD PTR -104[rbp]
	add	rdx, rax
	movzx	eax, BYTE PTR -169[rbp]
	mov	BYTE PTR [rdx], al
	mov	rax, QWORD PTR -104[rbp]
	lea	rdx, 1[rax]
	mov	rax, QWORD PTR -96[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
	mov	rax, QWORD PTR -96[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -104[rbp], rax
	mov	DWORD PTR -160[rbp], 0
.L19:
	mov	rax, QWORD PTR -16[rbp]
	mov	rdi, rax
	call	getc@PLT
	mov	BYTE PTR -169[rbp], al
	cmp	BYTE PTR -169[rbp], -1
	jne	.L57
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	assignReadsToBlocks
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	writeBlocks
	mov	rax, QWORD PTR -136[rbp]
	mov	rdi, rax
	call	freeList
	mov	rax, QWORD PTR -96[rbp]
	mov	rdi, rax
	call	free@PLT
.L18:
	mov	rax, QWORD PTR -128[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -120[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -16[rbp]
	mov	rdi, rax
	call	fclose@PLT
	nop
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE7:
	.size	read_bed_file, .-read_bed_file
	.section	.rodata
	.align 8
.LC18:
	.string	"# blockbuster result file generated %s# query file: %s\n# scale: %.1f, minblockheight: %i, mergeDistance: %i\n# block_number\tchromosome\tstart_of_block\tend_of_block\tstrand\treadIDs\n"
	.text
	.globl	writeHeader
	.type	writeHeader, @function
writeHeader:
.LFB8:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	r13
	push	r12
	push	rbx
	sub	rsp, 40
	.cfi_offset 13, -24
	.cfi_offset 12, -32
	.cfi_offset 3, -40
	mov	QWORD PTR -56[rbp], rdi
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -40[rbp], rax
	xor	eax, eax
	mov	edi, 0
	call	time@PLT
	mov	QWORD PTR -48[rbp], rax
	mov	r13d, DWORD PTR merge[rip]
	mov	r12d, DWORD PTR minblockheight[rip]
	mov	rbx, QWORD PTR sizescale[rip]
	lea	rax, -48[rbp]
	mov	rdi, rax
	call	ctime@PLT
	mov	rsi, rax
	mov	rax, QWORD PTR -56[rbp]
	mov	r8d, r13d
	mov	ecx, r12d
	movq	xmm0, rbx
	mov	rdx, rax
	lea	rdi, .LC18[rip]
	mov	eax, 1
	call	printf@PLT
	nop
	mov	rax, QWORD PTR -40[rbp]
	sub	rax, QWORD PTR fs:40
	je	.L63
	call	__stack_chk_fail@PLT
.L63:
	add	rsp, 40
	pop	rbx
	pop	r12
	pop	r13
	pop	rbp
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE8:
	.size	writeHeader, .-writeHeader
	.section	.rodata
	.align 8
.LC19:
	.string	"\nusage: blockbuster.x [OPTIONS] <file>"
	.align 8
.LC20:
	.string	"Detect blocks of overlapping reads using a gaussiandistribution approach\n"
.LC21:
	.string	"[OPTIONS]"
	.align 8
.LC22:
	.string	"-format <int>              file format of input file (default: 1)"
	.align 8
.LC23:
	.string	"                            (1) bed"
	.align 8
.LC24:
	.string	"                            (2) segemehl-output"
	.align 8
.LC25:
	.string	"-distance <int>            minimum distance between two clusters (default: 30)"
	.align 8
.LC26:
	.string	"-minClusterHeight <double> minimum height of a cluster (default: 10)"
	.align 8
.LC27:
	.string	"-minBlockHeight <double>   minimum height of a block (default: 2)"
	.align 8
.LC28:
	.string	"-scale <int>               scale stddev for a single read (default: 0.2)"
	.align 8
.LC29:
	.string	"-merge <int>               merge reads with almost similar means (default: 0)"
	.align 8
.LC30:
	.string	"-tagFilter <int>           skip tags with expression smaller than this value (default: 0)"
	.align 8
.LC31:
	.string	"-print <int>               print out: (1) blocks (2) reads (default: 1)\n"
.LC32:
	.string	"[COMPLAINT DEPARTMENT]"
	.align 8
.LC33:
	.string	"Please be nice when complaining to david@bioinf.uni-leipzig.de"
	.align 8
.LC34:
	.string	"or steve@bioinf.uni-leipzig.de\n"
	.text
	.globl	printUsage
	.type	printUsage, @function
printUsage:
.LFB9:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	lea	rdi, .LC19[rip]
	call	puts@PLT
	lea	rdi, .LC20[rip]
	call	puts@PLT
	lea	rdi, .LC21[rip]
	call	puts@PLT
	lea	rdi, .LC22[rip]
	call	puts@PLT
	lea	rdi, .LC23[rip]
	call	puts@PLT
	lea	rdi, .LC24[rip]
	call	puts@PLT
	lea	rdi, .LC25[rip]
	call	puts@PLT
	lea	rdi, .LC26[rip]
	call	puts@PLT
	lea	rdi, .LC27[rip]
	call	puts@PLT
	lea	rdi, .LC28[rip]
	call	puts@PLT
	lea	rdi, .LC29[rip]
	call	puts@PLT
	lea	rdi, .LC30[rip]
	call	puts@PLT
	lea	rdi, .LC31[rip]
	call	puts@PLT
	lea	rdi, .LC32[rip]
	call	puts@PLT
	lea	rdi, .LC33[rip]
	call	puts@PLT
	lea	rdi, .LC34[rip]
	call	puts@PLT
	nop
	pop	rbp
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE9:
	.size	printUsage, .-printUsage
	.globl	assignReadsToBlocks
	.type	assignReadsToBlocks, @function
assignReadsToBlocks:
.LFB10:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	rbx
	sub	rsp, 88
	.cfi_offset 3, -24
	mov	QWORD PTR -88[rbp], rdi
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -24[rbp], rax
	xor	eax, eax
	mov	rax, rsp
	mov	rbx, rax
	mov	DWORD PTR -56[rbp], 1
	mov	eax, DWORD PTR clusterEnd[rip]
	mov	edx, DWORD PTR clusterStart[rip]
	sub	eax, edx
	mov	DWORD PTR -52[rbp], eax
	mov	eax, DWORD PTR -52[rbp]
	movsx	rdx, eax
	sub	rdx, 1
	mov	QWORD PTR -40[rbp], rdx
	movsx	rdx, eax
	mov	r10, rdx
	mov	r11d, 0
	movsx	rdx, eax
	mov	r8, rdx
	mov	r9d, 0
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	eax, 16
	sub	rax, 1
	add	rax, rdx
	mov	esi, 16
	mov	edx, 0
	div	rsi
	imul	rax, rax, 16
	mov	rcx, rax
	and	rcx, -4096
	mov	rdx, rsp
	sub	rdx, rcx
.L66:
	cmp	rsp, rdx
	je	.L67
	sub	rsp, 4096
	or	QWORD PTR 4088[rsp], 0
	jmp	.L66
.L67:
	mov	rdx, rax
	and	edx, 4095
	sub	rsp, rdx
	mov	rdx, rax
	and	edx, 4095
	test	rdx, rdx
	je	.L68
	and	eax, 4095
	sub	rax, 8
	add	rax, rsp
	or	QWORD PTR [rax], 0
.L68:
	mov	rax, rsp
	add	rax, 7
	shr	rax, 3
	sal	rax, 3
	mov	QWORD PTR -32[rbp], rax
	mov	DWORD PTR -60[rbp], 1
	mov	DWORD PTR -64[rbp], 0
	jmp	.L69
.L73:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	getRest
	mov	DWORD PTR -60[rbp], eax
	mov	DWORD PTR -68[rbp], 0
	mov	DWORD PTR -68[rbp], 0
	jmp	.L70
.L71:
	mov	rax, QWORD PTR -32[rbp]
	mov	edx, DWORD PTR -68[rbp]
	movsx	rdx, edx
	pxor	xmm0, xmm0
	movsd	QWORD PTR [rax+rdx*8], xmm0
	add	DWORD PTR -68[rbp], 1
.L70:
	mov	eax, DWORD PTR -68[rbp]
	cmp	eax, DWORD PTR -52[rbp]
	jl	.L71
	mov	edx, DWORD PTR -52[rbp]
	mov	rcx, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rsi, rcx
	mov	rdi, rax
	call	writeSuperGaussian
	mov	edx, DWORD PTR -52[rbp]
	mov	rax, QWORD PTR -32[rbp]
	mov	esi, edx
	mov	rdi, rax
	call	getHighestPeak
	mov	DWORD PTR -48[rbp], eax
	mov	edx, DWORD PTR readCount[rip]
	mov	ecx, DWORD PTR -56[rbp]
	mov	esi, DWORD PTR -48[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	assignReads
	mov	DWORD PTR -44[rbp], eax
	cmp	DWORD PTR -44[rbp], 0
	je	.L72
	add	DWORD PTR -56[rbp], 1
.L72:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	getRest
	mov	DWORD PTR -64[rbp], eax
.L69:
	mov	eax, DWORD PTR -60[rbp]
	cmp	eax, DWORD PTR -64[rbp]
	jne	.L73
	mov	rsp, rbx
	nop
	mov	rax, QWORD PTR -24[rbp]
	sub	rax, QWORD PTR fs:40
	je	.L74
	call	__stack_chk_fail@PLT
.L74:
	mov	rbx, QWORD PTR -8[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE10:
	.size	assignReadsToBlocks, .-assignReadsToBlocks
	.globl	gaussian
	.type	gaussian, @function
gaussian:
.LFB11:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 48
	movsd	QWORD PTR -8[rbp], xmm0
	movsd	QWORD PTR -16[rbp], xmm1
	movsd	QWORD PTR -24[rbp], xmm2
	movsd	xmm0, QWORD PTR pi[rip]
	addsd	xmm0, xmm0
	movq	rax, xmm0
	movq	xmm0, rax
	call	sqrt@PLT
	movq	rax, xmm0
	movq	xmm1, rax
	mulsd	xmm1, QWORD PTR -24[rbp]
	movsd	xmm0, QWORD PTR .LC17[rip]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -32[rbp], xmm0
	movsd	xmm0, QWORD PTR -8[rbp]
	movapd	xmm5, xmm0
	subsd	xmm5, QWORD PTR -16[rbp]
	movq	rax, xmm5
	movsd	xmm0, QWORD PTR .LC36[rip]
	movapd	xmm1, xmm0
	movq	xmm0, rax
	call	pow@PLT
	movq	rax, xmm0
	movq	xmm0, QWORD PTR .LC37[rip]
	movq	xmm3, rax
	xorpd	xmm3, xmm0
	movsd	QWORD PTR -40[rbp], xmm3
	movsd	xmm0, QWORD PTR .LC36[rip]
	mov	rax, QWORD PTR -24[rbp]
	movapd	xmm1, xmm0
	movq	xmm0, rax
	call	pow@PLT
	addsd	xmm0, xmm0
	movsd	xmm3, QWORD PTR -40[rbp]
	divsd	xmm3, xmm0
	movq	rax, xmm3
	movq	xmm0, rax
	call	exp@PLT
	mulsd	xmm0, QWORD PTR -32[rbp]
	movq	rax, xmm0
	movq	xmm0, rax
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE11:
	.size	gaussian, .-gaussian
	.globl	getHighestPeak
	.type	getHighestPeak, @function
getHighestPeak:
.LFB12:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	mov	QWORD PTR -24[rbp], rdi
	mov	DWORD PTR -28[rbp], esi
	pxor	xmm0, xmm0
	movsd	QWORD PTR -8[rbp], xmm0
	mov	DWORD PTR -12[rbp], 0
	mov	DWORD PTR -16[rbp], 0
	jmp	.L78
.L81:
	mov	eax, DWORD PTR -16[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -24[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	comisd	xmm0, QWORD PTR -8[rbp]
	jbe	.L79
	mov	eax, DWORD PTR -16[rbp]
	mov	DWORD PTR -12[rbp], eax
	mov	eax, DWORD PTR -16[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -24[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	QWORD PTR -8[rbp], xmm0
.L79:
	add	DWORD PTR -16[rbp], 1
.L78:
	mov	eax, DWORD PTR -16[rbp]
	cmp	eax, DWORD PTR -28[rbp]
	jl	.L81
	mov	eax, DWORD PTR -12[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -24[rbp]
	add	rax, rdx
	pxor	xmm0, xmm0
	movsd	QWORD PTR [rax], xmm0
	mov	eax, DWORD PTR -12[rbp]
	pop	rbp
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE12:
	.size	getHighestPeak, .-getHighestPeak
	.globl	getRest
	.type	getRest, @function
getRest:
.LFB13:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	mov	QWORD PTR -24[rbp], rdi
	mov	DWORD PTR -4[rbp], 0
	jmp	.L85
.L87:
	mov	rax, QWORD PTR -24[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	eax, -1
	jne	.L86
	add	DWORD PTR -4[rbp], 1
.L86:
	mov	rax, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -24[rbp], rax
.L85:
	cmp	QWORD PTR -24[rbp], 0
	jne	.L87
	mov	eax, DWORD PTR -4[rbp]
	pop	rbp
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE13:
	.size	getRest, .-getRest
	.globl	writeSuperGaussian
	.type	writeSuperGaussian, @function
writeSuperGaussian:
.LFB14:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 80
	mov	QWORD PTR -56[rbp], rdi
	mov	QWORD PTR -64[rbp], rsi
	mov	DWORD PTR -68[rbp], edx
	jmp	.L90
.L98:
	mov	rax, QWORD PTR -56[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	eax, -1
	jne	.L91
	mov	rax, QWORD PTR -56[rbp]
	mov	edx, DWORD PTR 8[rax]
	mov	rax, QWORD PTR -56[rbp]
	mov	eax, DWORD PTR 12[rax]
	add	eax, edx
	mov	edx, eax
	shr	edx, 31
	add	eax, edx
	sar	eax
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, eax
	mov	eax, DWORD PTR clusterStart[rip]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	subsd	xmm0, xmm1
	movsd	QWORD PTR -32[rbp], xmm0
	mov	rax, QWORD PTR -56[rbp]
	mov	edx, DWORD PTR 12[rax]
	mov	rax, QWORD PTR -56[rbp]
	mov	ecx, DWORD PTR 8[rax]
	mov	eax, edx
	sub	eax, ecx
	cdq
	xor	eax, edx
	sub	eax, edx
	mov	edx, eax
	shr	edx, 31
	add	eax, edx
	sar	eax
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR sizescale[rip]
	mulsd	xmm0, xmm1
	movsd	QWORD PTR -24[rbp], xmm0
	mov	DWORD PTR -36[rbp], 0
	mov	DWORD PTR -36[rbp], 0
	jmp	.L92
.L97:
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, DWORD PTR -36[rbp]
	movsd	xmm1, QWORD PTR -32[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -16[rbp], xmm0
	mov	rax, QWORD PTR -56[rbp]
	movsd	xmm3, QWORD PTR 24[rax]
	movsd	QWORD PTR -80[rbp], xmm3
	movsd	xmm1, QWORD PTR -24[rbp]
	movsd	xmm0, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -16[rbp]
	movapd	xmm2, xmm1
	movapd	xmm1, xmm0
	movq	xmm0, rax
	call	gaussian
	mulsd	xmm0, QWORD PTR -80[rbp]
	movsd	QWORD PTR -8[rbp], xmm0
	cmp	DWORD PTR -36[rbp], 0
	jne	.L93
	movsd	xmm0, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm0
	cmp	DWORD PTR -68[rbp], eax
	jg	.L94
	movsd	xmm0, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm0
	test	eax, eax
	jle	.L95
.L94:
	movsd	xmm0, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm0
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	xmm1, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm1
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	addsd	xmm0, QWORD PTR -8[rbp]
	movsd	QWORD PTR [rax], xmm0
	jmp	.L95
.L93:
	movsd	xmm0, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm0
	cmp	DWORD PTR -68[rbp], eax
	jle	.L96
	movsd	xmm0, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm0
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	xmm1, QWORD PTR -16[rbp]
	cvttsd2si	eax, xmm1
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	addsd	xmm0, QWORD PTR -8[rbp]
	movsd	QWORD PTR [rax], xmm0
.L96:
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -36[rbp]
	movsd	xmm0, QWORD PTR -32[rbp]
	subsd	xmm0, xmm1
	cvttsd2si	eax, xmm0
	test	eax, eax
	jle	.L95
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -36[rbp]
	movsd	xmm0, QWORD PTR -32[rbp]
	subsd	xmm0, xmm1
	cvttsd2si	eax, xmm0
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	pxor	xmm2, xmm2
	cvtsi2sd	xmm2, DWORD PTR -36[rbp]
	movsd	xmm1, QWORD PTR -32[rbp]
	subsd	xmm1, xmm2
	cvttsd2si	eax, xmm1
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -64[rbp]
	add	rax, rdx
	addsd	xmm0, QWORD PTR -8[rbp]
	movsd	QWORD PTR [rax], xmm0
.L95:
	add	DWORD PTR -36[rbp], 1
.L92:
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -36[rbp]
	movsd	xmm0, QWORD PTR -24[rbp]
	addsd	xmm0, xmm0
	comisd	xmm0, xmm1
	jnb	.L97
.L91:
	mov	rax, QWORD PTR -56[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -56[rbp], rax
.L90:
	cmp	QWORD PTR -56[rbp], 0
	jne	.L98
	nop
	nop
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE14:
	.size	writeSuperGaussian, .-writeSuperGaussian
	.globl	assignReads
	.type	assignReads, @function
assignReads:
.LFB15:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 96
	mov	QWORD PTR -72[rbp], rdi
	mov	DWORD PTR -76[rbp], esi
	mov	DWORD PTR -80[rbp], edx
	mov	DWORD PTR -84[rbp], ecx
	mov	eax, DWORD PTR tagCount[rip]
	cdqe
	sal	rax, 3
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -40[rbp], rax
	mov	eax, DWORD PTR tagCount[rip]
	cdqe
	sal	rax, 3
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -32[rbp], rax
	mov	DWORD PTR -64[rbp], 0
	mov	DWORD PTR -60[rbp], 0
	jmp	.L100
.L101:
	mov	eax, DWORD PTR -60[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR .LC14[rip]
	movsd	QWORD PTR [rax], xmm0
	mov	eax, DWORD PTR -60[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR .LC14[rip]
	movsd	QWORD PTR [rax], xmm0
	add	DWORD PTR -60[rbp], 1
.L100:
	mov	eax, DWORD PTR tagCount[rip]
	cmp	DWORD PTR -60[rbp], eax
	jl	.L101
	mov	DWORD PTR -56[rbp], 0
	mov	DWORD PTR -52[rbp], -1
	jmp	.L102
.L111:
	mov	edx, DWORD PTR tagCount[rip]
	mov	rcx, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR -40[rbp]
	mov	rsi, rcx
	mov	rdi, rax
	call	stddev
	movq	rax, xmm0
	mov	QWORD PTR -24[rbp], rax
	mov	eax, DWORD PTR -56[rbp]
	mov	DWORD PTR -52[rbp], eax
	mov	rax, QWORD PTR -72[rbp]
	mov	QWORD PTR -48[rbp], rax
	jmp	.L103
.L110:
	mov	rax, QWORD PTR -48[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	eax, -1
	jne	.L104
	mov	rax, QWORD PTR -48[rbp]
	mov	edx, DWORD PTR 8[rax]
	mov	rax, QWORD PTR -48[rbp]
	mov	eax, DWORD PTR 12[rax]
	add	eax, edx
	mov	edx, eax
	shr	edx, 31
	add	eax, edx
	sar	eax
	mov	edx, eax
	mov	eax, DWORD PTR clusterStart[rip]
	sub	edx, eax
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, edx
	movsd	QWORD PTR -16[rbp], xmm0
	mov	rax, QWORD PTR -48[rbp]
	mov	edx, DWORD PTR 12[rax]
	mov	rax, QWORD PTR -48[rbp]
	mov	ecx, DWORD PTR 8[rax]
	mov	eax, edx
	sub	eax, ecx
	cdq
	xor	eax, edx
	sub	eax, edx
	mov	edx, eax
	shr	edx, 31
	add	eax, edx
	sar	eax
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR sizescale[rip]
	mulsd	xmm0, xmm1
	movsd	QWORD PTR -8[rbp], xmm0
	movsd	xmm0, QWORD PTR -16[rbp]
	subsd	xmm0, QWORD PTR -8[rbp]
	movapd	xmm1, xmm0
	subsd	xmm1, QWORD PTR -24[rbp]
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, DWORD PTR -76[rbp]
	comisd	xmm0, xmm1
	jb	.L105
	movsd	xmm0, QWORD PTR -16[rbp]
	addsd	xmm0, QWORD PTR -8[rbp]
	addsd	xmm0, QWORD PTR -24[rbp]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -76[rbp]
	comisd	xmm0, xmm1
	jnb	.L107
.L105:
	mov	edx, DWORD PTR merge[rip]
	mov	eax, DWORD PTR -76[rbp]
	sub	eax, edx
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR -16[rbp]
	comisd	xmm0, xmm1
	jb	.L104
	mov	edx, DWORD PTR merge[rip]
	mov	eax, DWORD PTR -76[rbp]
	add	eax, edx
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, eax
	comisd	xmm0, QWORD PTR -16[rbp]
	jb	.L104
.L107:
	mov	eax, DWORD PTR -64[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR -16[rbp]
	movsd	QWORD PTR [rax], xmm0
	mov	eax, DWORD PTR -64[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -32[rbp]
	add	rdx, rax
	mov	rax, QWORD PTR -48[rbp]
	movsd	xmm0, QWORD PTR 24[rax]
	movsd	QWORD PTR [rdx], xmm0
	add	DWORD PTR -64[rbp], 1
	mov	rax, QWORD PTR -48[rbp]
	mov	edx, DWORD PTR -84[rbp]
	mov	DWORD PTR 16[rax], edx
	add	DWORD PTR -56[rbp], 1
.L104:
	mov	rax, QWORD PTR -48[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -48[rbp], rax
.L103:
	cmp	QWORD PTR -48[rbp], 0
	jne	.L110
.L102:
	mov	eax, DWORD PTR -52[rbp]
	cmp	eax, DWORD PTR -56[rbp]
	jne	.L111
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -32[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	eax, DWORD PTR -56[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE15:
	.size	assignReads, .-assignReads
	.globl	stddev
	.type	stddev, @function
stddev:
.LFB16:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 64
	mov	QWORD PTR -40[rbp], rdi
	mov	QWORD PTR -48[rbp], rsi
	mov	DWORD PTR -52[rbp], edx
	pxor	xmm0, xmm0
	movsd	QWORD PTR -16[rbp], xmm0
	mov	DWORD PTR -32[rbp], 0
	mov	DWORD PTR -28[rbp], 0
	jmp	.L116
.L121:
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	xmm1, QWORD PTR .LC14[rip]
	ucomisd	xmm0, xmm1
	jp	.L130
	movsd	xmm1, QWORD PTR .LC14[rip]
	comisd	xmm0, xmm1
	je	.L117
.L130:
	mov	DWORD PTR -24[rbp], 0
	jmp	.L119
.L120:
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	xmm1, QWORD PTR -16[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -16[rbp], xmm0
	add	DWORD PTR -32[rbp], 1
	add	DWORD PTR -24[rbp], 1
.L119:
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -24[rbp]
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -48[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	comisd	xmm0, xmm1
	ja	.L120
.L117:
	add	DWORD PTR -28[rbp], 1
.L116:
	mov	eax, DWORD PTR -28[rbp]
	cmp	eax, DWORD PTR -52[rbp]
	jl	.L121
	cmp	DWORD PTR -32[rbp], 0
	jne	.L122
	mov	rax, QWORD PTR .LC35[rip]
	jmp	.L123
.L122:
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -32[rbp]
	movsd	xmm0, QWORD PTR -16[rbp]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -8[rbp], xmm0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -16[rbp], xmm0
	mov	DWORD PTR -28[rbp], 0
	jmp	.L124
.L129:
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	xmm1, QWORD PTR .LC14[rip]
	ucomisd	xmm0, xmm1
	jp	.L131
	movsd	xmm1, QWORD PTR .LC14[rip]
	comisd	xmm0, xmm1
	je	.L125
.L131:
	mov	DWORD PTR -20[rbp], 0
	jmp	.L127
.L128:
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	subsd	xmm0, QWORD PTR -8[rbp]
	movq	rax, xmm0
	movsd	xmm0, QWORD PTR .LC36[rip]
	movapd	xmm1, xmm0
	movq	xmm0, rax
	call	pow@PLT
	movsd	xmm1, QWORD PTR -16[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -16[rbp], xmm0
	add	DWORD PTR -20[rbp], 1
.L127:
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -20[rbp]
	mov	eax, DWORD PTR -28[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -48[rbp]
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	comisd	xmm0, xmm1
	ja	.L128
.L125:
	add	DWORD PTR -28[rbp], 1
.L124:
	mov	eax, DWORD PTR -28[rbp]
	cmp	eax, DWORD PTR -52[rbp]
	jl	.L129
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, DWORD PTR -32[rbp]
	movsd	xmm0, QWORD PTR -16[rbp]
	divsd	xmm0, xmm1
	movq	rax, xmm0
	movq	xmm0, rax
	call	sqrt@PLT
	movq	rax, xmm0
.L123:
	movq	xmm0, rax
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE16:
	.size	stddev, .-stddev
	.section	.rodata
	.align 8
.LC38:
	.string	">cluster_%i\t%s\t%i\t%i\t%s\t%.2f\t%i\t%i\n"
.LC39:
	.string	"\t%i\t%s\t%i\t%i\t%s\t%.2f\t%i\n"
.LC40:
	.string	"\t%s\t%d\t%d\t%s\t%lf\t%s\t%i\n"
	.text
	.globl	writeBlocks
	.type	writeBlocks, @function
writeBlocks:
.LFB17:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	add	rsp, -128
	mov	QWORD PTR -120[rbp], rdi
	mov	DWORD PTR -112[rbp], 0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -72[rbp], xmm0
	mov	DWORD PTR -108[rbp], 0
	mov	DWORD PTR -104[rbp], 0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -64[rbp], xmm0
	mov	DWORD PTR -100[rbp], 0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -56[rbp], xmm0
	mov	DWORD PTR -96[rbp], 1
	jmp	.L133
.L138:
	add	DWORD PTR -112[rbp], 1
	mov	DWORD PTR -96[rbp], 0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -72[rbp], xmm0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -64[rbp], xmm0
	mov	DWORD PTR -104[rbp], 0
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -48[rbp], rax
	jmp	.L134
.L136:
	mov	rax, QWORD PTR -48[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -112[rbp], eax
	jne	.L135
	add	DWORD PTR -96[rbp], 1
	mov	rax, QWORD PTR -48[rbp]
	movsd	xmm0, QWORD PTR 24[rax]
	movsd	xmm1, QWORD PTR -72[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -72[rbp], xmm0
	mov	rax, QWORD PTR -48[rbp]
	movsd	xmm0, QWORD PTR 24[rax]
	movsd	xmm1, QWORD PTR -64[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -64[rbp], xmm0
	add	DWORD PTR -104[rbp], 1
.L135:
	mov	rax, QWORD PTR -48[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -48[rbp], rax
.L134:
	cmp	QWORD PTR -48[rbp], 0
	jne	.L136
	mov	eax, DWORD PTR minblockheight[rip]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR -72[rbp]
	comisd	xmm0, xmm1
	jnb	.L159
	jmp	.L133
.L159:
	cmp	DWORD PTR -96[rbp], 0
	jle	.L133
	add	DWORD PTR -108[rbp], 1
	movsd	xmm0, QWORD PTR -56[rbp]
	addsd	xmm0, QWORD PTR -64[rbp]
	movsd	QWORD PTR -56[rbp], xmm0
	mov	eax, DWORD PTR -104[rbp]
	add	DWORD PTR -100[rbp], eax
.L133:
	cmp	DWORD PTR -96[rbp], 0
	jg	.L138
	cmp	DWORD PTR -108[rbp], 0
	jle	.L162
	mov	eax, DWORD PTR clusterCounter[rip]
	add	eax, 1
	mov	DWORD PTR clusterCounter[rip], eax
	mov	r9, QWORD PTR clusterStrand[rip]
	mov	r8d, DWORD PTR clusterEnd[rip]
	mov	ecx, DWORD PTR clusterStart[rip]
	mov	rdx, QWORD PTR clusterChrom[rip]
	mov	eax, DWORD PTR clusterCounter[rip]
	mov	rsi, QWORD PTR -56[rbp]
	mov	edi, DWORD PTR -108[rbp]
	push	rdi
	mov	edi, DWORD PTR -100[rbp]
	push	rdi
	movq	xmm0, rsi
	mov	esi, eax
	lea	rdi, .LC38[rip]
	mov	eax, 1
	call	printf@PLT
	add	rsp, 16
	mov	eax, DWORD PTR print[rip]
	cmp	eax, 1
	jne	.L140
	mov	DWORD PTR -112[rbp], 0
	mov	DWORD PTR -96[rbp], 1
	mov	DWORD PTR -92[rbp], 0
	jmp	.L141
.L149:
	add	DWORD PTR -112[rbp], 1
	mov	DWORD PTR -96[rbp], 0
	pxor	xmm0, xmm0
	movsd	QWORD PTR -40[rbp], xmm0
	mov	DWORD PTR -88[rbp], 0
	mov	DWORD PTR -84[rbp], -1
	mov	DWORD PTR -80[rbp], -1
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -32[rbp], rax
	jmp	.L142
.L147:
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -112[rbp], eax
	jne	.L143
	cmp	DWORD PTR -84[rbp], -1
	jne	.L144
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 8[rax]
	mov	DWORD PTR -84[rbp], eax
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 12[rax]
	mov	DWORD PTR -80[rbp], eax
.L144:
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 8[rax]
	cmp	DWORD PTR -84[rbp], eax
	jle	.L145
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 8[rax]
	mov	DWORD PTR -84[rbp], eax
.L145:
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 12[rax]
	cmp	DWORD PTR -80[rbp], eax
	jge	.L146
	mov	rax, QWORD PTR -32[rbp]
	mov	eax, DWORD PTR 12[rax]
	mov	DWORD PTR -80[rbp], eax
.L146:
	mov	rax, QWORD PTR -32[rbp]
	movsd	xmm0, QWORD PTR 24[rax]
	movsd	xmm1, QWORD PTR -40[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -40[rbp], xmm0
	add	DWORD PTR -88[rbp], 1
	add	DWORD PTR -96[rbp], 1
.L143:
	mov	rax, QWORD PTR -32[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -32[rbp], rax
.L142:
	cmp	QWORD PTR -32[rbp], 0
	jne	.L147
	mov	eax, DWORD PTR minblockheight[rip]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR -40[rbp]
	comisd	xmm0, xmm1
	jnb	.L160
	jmp	.L141
.L160:
	cmp	DWORD PTR -96[rbp], 0
	jle	.L141
	add	DWORD PTR -92[rbp], 1
	mov	r9, QWORD PTR clusterStrand[rip]
	mov	rdx, QWORD PTR clusterChrom[rip]
	mov	rsi, QWORD PTR -40[rbp]
	mov	r8d, DWORD PTR -80[rbp]
	mov	ecx, DWORD PTR -84[rbp]
	mov	eax, DWORD PTR -92[rbp]
	sub	rsp, 8
	mov	edi, DWORD PTR -88[rbp]
	push	rdi
	movq	xmm0, rsi
	mov	esi, eax
	lea	rdi, .LC39[rip]
	mov	eax, 1
	call	printf@PLT
	add	rsp, 16
.L141:
	cmp	DWORD PTR -96[rbp], 0
	jg	.L149
.L140:
	mov	eax, DWORD PTR print[rip]
	cmp	eax, 2
	jne	.L162
	mov	DWORD PTR -112[rbp], 0
	mov	DWORD PTR -96[rbp], 1
	mov	DWORD PTR -76[rbp], 0
	jmp	.L150
.L158:
	pxor	xmm0, xmm0
	movsd	QWORD PTR -24[rbp], xmm0
	add	DWORD PTR -112[rbp], 1
	mov	DWORD PTR -96[rbp], 0
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -16[rbp], rax
	jmp	.L151
.L153:
	mov	rax, QWORD PTR -16[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -112[rbp], eax
	jne	.L152
	mov	rax, QWORD PTR -16[rbp]
	movsd	xmm0, QWORD PTR 24[rax]
	movsd	xmm1, QWORD PTR -24[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -24[rbp], xmm0
	add	DWORD PTR -96[rbp], 1
.L152:
	mov	rax, QWORD PTR -16[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -16[rbp], rax
.L151:
	cmp	QWORD PTR -16[rbp], 0
	jne	.L153
	mov	eax, DWORD PTR minblockheight[rip]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	movsd	xmm0, QWORD PTR -24[rbp]
	comisd	xmm0, xmm1
	jnb	.L161
	jmp	.L150
.L161:
	cmp	DWORD PTR -96[rbp], 0
	jle	.L150
	add	DWORD PTR -76[rbp], 1
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -8[rbp], rax
	jmp	.L155
.L157:
	mov	rax, QWORD PTR -8[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -112[rbp], eax
	jne	.L156
	mov	rax, QWORD PTR -8[rbp]
	mov	r9, QWORD PTR 40[rax]
	mov	rax, QWORD PTR -8[rbp]
	mov	rsi, QWORD PTR 24[rax]
	mov	rax, QWORD PTR -8[rbp]
	mov	r8, QWORD PTR 32[rax]
	mov	rax, QWORD PTR -8[rbp]
	mov	ecx, DWORD PTR 12[rax]
	mov	rax, QWORD PTR -8[rbp]
	mov	edx, DWORD PTR 8[rax]
	mov	rax, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR [rax]
	sub	rsp, 8
	mov	edi, DWORD PTR -76[rbp]
	push	rdi
	movq	xmm0, rsi
	mov	rsi, rax
	lea	rdi, .LC40[rip]
	mov	eax, 1
	call	printf@PLT
	add	rsp, 16
.L156:
	mov	rax, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -8[rbp], rax
.L155:
	cmp	QWORD PTR -8[rbp], 0
	jne	.L157
.L150:
	cmp	DWORD PTR -96[rbp], 0
	jg	.L158
.L162:
	nop
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE17:
	.size	writeBlocks, .-writeBlocks
	.globl	freeList
	.type	freeList, @function
freeList:
.LFB18:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 32
	mov	QWORD PTR -24[rbp], rdi
	jmp	.L164
.L165:
	mov	rax, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR 48[rax]
	mov	QWORD PTR -8[rbp], rax
	mov	rax, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR 32[rax]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -24[rbp]
	mov	rax, QWORD PTR 40[rax]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -24[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -8[rbp]
	mov	QWORD PTR -24[rbp], rax
.L164:
	cmp	QWORD PTR -24[rbp], 0
	jne	.L165
	nop
	nop
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE18:
	.size	freeList, .-freeList
	.section	.rodata
	.align 8
.LC14:
	.long	0
	.long	-1074790400
	.align 8
.LC17:
	.long	0
	.long	1072693248
	.align 8
.LC35:
	.long	0
	.long	0
	.align 8
.LC36:
	.long	0
	.long	1073741824
	.align 16
.LC37:
	.long	0
	.long	-2147483648
	.long	0
	.long	0
	.ident	"GCC: (Ubuntu 10.5.0-1ubuntu1~20.04) 10.5.0"
	.section	.note.GNU-stack,"",@progbits
	.section	.note.gnu.property,"a"
	.align 8
	.long	 1f - 0f
	.long	 4f - 1f
	.long	 5
0:
	.string	 "GNU"
1:
	.align 8
	.long	 0xc0000002
	.long	 3f - 2f
2:
	.long	 0x3
3:
	.align 8
4:

	.arch armv5t
	.eabi_attribute 20, 1
	.eabi_attribute 21, 1
	.eabi_attribute 23, 3
	.eabi_attribute 24, 1
	.eabi_attribute 25, 1
	.eabi_attribute 26, 2
	.eabi_attribute 30, 6
	.eabi_attribute 34, 0
	.eabi_attribute 18, 4
	.file	"191907.c"
	.text
	.global	pi
	.data
	.align	3
	.type	pi, %object
	.size	pi, 8
pi:
	.word	1405670641
	.word	1074340347
	.global	initChrom
	.section	.rodata
	.align	2
.LC0:
	.ascii	"x\000"
	.data
	.align	2
	.type	initChrom, %object
	.size	initChrom, 4
initChrom:
	.word	.LC0
	.comm	clusterChrom,4,4
	.comm	clusterStrand,4,4
	.global	clusterStart
	.align	2
	.type	clusterStart, %object
	.size	clusterStart, 4
clusterStart:
	.word	-1
	.global	clusterEnd
	.align	2
	.type	clusterEnd, %object
	.size	clusterEnd, 4
clusterEnd:
	.word	-1
	.global	clusterHeight
	.bss
	.align	3
	.type	clusterHeight, %object
	.size	clusterHeight, 8
clusterHeight:
	.space	8
	.global	readCount
	.align	2
	.type	readCount, %object
	.size	readCount, 4
readCount:
	.space	4
	.global	tagCount
	.align	2
	.type	tagCount, %object
	.size	tagCount, 4
tagCount:
	.space	4
	.global	clusterCounter
	.align	2
	.type	clusterCounter, %object
	.size	clusterCounter, 4
clusterCounter:
	.space	4
	.global	minblockheight
	.data
	.align	2
	.type	minblockheight, %object
	.size	minblockheight, 4
minblockheight:
	.word	2
	.global	sizescale
	.align	3
	.type	sizescale, %object
	.size	sizescale, 8
sizescale:
	.word	2576980378
	.word	1070176665
	.global	merge
	.bss
	.align	2
	.type	merge, %object
	.size	merge, 4
merge:
	.space	4
	.global	distance
	.data
	.align	2
	.type	distance, %object
	.size	distance, 4
distance:
	.word	30
	.global	minClusterHeight
	.align	2
	.type	minClusterHeight, %object
	.size	minClusterHeight, 4
minClusterHeight:
	.word	10
	.global	print
	.align	2
	.type	print, %object
	.size	print, 4
print:
	.word	1
	.global	tagFilter
	.bss
	.align	3
	.type	tagFilter, %object
	.size	tagFilter, 8
tagFilter:
	.space	8
	.global	sep
	.section	.rodata
	.align	2
.LC1:
	.ascii	"\011\000"
	.data
	.align	2
	.type	sep, %object
	.size	sep, 4
sep:
	.word	.LC1
	.global	type
	.align	2
	.type	type, %object
	.size	type, 4
type:
	.word	1
	.section	.rodata
	.align	2
.LC2:
	.ascii	"-scale\000"
	.align	2
.LC3:
	.ascii	"-minBlockHeight\000"
	.align	2
.LC4:
	.ascii	"-merge\000"
	.align	2
.LC5:
	.ascii	"-distance\000"
	.align	2
.LC6:
	.ascii	"-minClusterHeight\000"
	.align	2
.LC7:
	.ascii	"-tagFilter\000"
	.global	__aeabi_i2d
	.align	2
.LC8:
	.ascii	"-print\000"
	.align	2
.LC9:
	.ascii	"-format\000"
	.align	2
.LC10:
	.ascii	"-h\000"
	.text
	.align	2
	.global	main
	.syntax unified
	.arm
	.fpu softvfp
	.type	main, %function
main:
	@ args = 0, pretend = 0, frame = 16
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #16
	str	r0, [fp, #-16]
	str	r1, [fp, #-20]
	mov	r0, #3
	bl	malloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, .L16
	str	r2, [r3]
	ldr	r3, .L16
	ldr	r3, [r3]
	ldr	r2, .L16+4
	ldr	r2, [r2]
	mov	r1, r2
	mov	r0, r3
	bl	strcpy
	mov	r0, #3
	bl	malloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, .L16+8
	str	r2, [r3]
	ldr	r3, .L16
	ldr	r3, [r3]
	ldr	r2, .L16+4
	ldr	r2, [r2]
	mov	r1, r2
	mov	r0, r3
	bl	strcpy
	ldr	r3, [fp, #-16]
	cmp	r3, #1
	bne	.L2
	bl	printUsage
	mov	r0, #0
	bl	exit
.L2:
	mvn	r3, #0
	str	r3, [fp, #-8]
	mov	r3, #1
	str	r3, [fp, #-12]
	b	.L3
.L13:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+12
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L4
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L16+16
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L4:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+20
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L5
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+24
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L5:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+28
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L6
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+32
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L6:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+36
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L7
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+40
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L7:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+44
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L8
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+48
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L8:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+52
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L9
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L16+56
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L9:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+60
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L10
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+64
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L10:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+68
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L11
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	ldr	r2, .L16+72
	str	r3, [r2]
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L11:
	ldr	r3, [fp, #-12]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L16+76
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L12
	bl	printUsage
	mov	r0, #0
	bl	exit
.L12:
	ldr	r3, [fp, #-12]
	add	r3, r3, #1
	str	r3, [fp, #-12]
.L3:
	ldr	r2, [fp, #-12]
	ldr	r3, [fp, #-16]
	cmp	r2, r3
	blt	.L13
	ldr	r3, [fp, #-16]
	sub	r3, r3, #1
	ldr	r2, [fp, #-8]
	cmp	r2, r3
	bne	.L14
	bl	printUsage
	mov	r0, #0
	bl	exit
.L14:
	ldr	r3, [fp, #-16]
	sub	r3, r3, #-1073741823
	lsl	r3, r3, #2
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	read_bed_file
	mov	r3, #0
	mov	r0, r3
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
.L17:
	.align	2
.L16:
	.word	clusterChrom
	.word	initChrom
	.word	clusterStrand
	.word	.LC2
	.word	sizescale
	.word	.LC3
	.word	minblockheight
	.word	.LC4
	.word	merge
	.word	.LC5
	.word	distance
	.word	.LC6
	.word	minClusterHeight
	.word	.LC7
	.word	tagFilter
	.word	.LC8
	.word	print
	.word	.LC9
	.word	type
	.word	.LC10
	.size	main, .-main
	.section	.rodata
	.align	2
.LC11:
	.ascii	"r\000"
	.align	2
.LC12:
	.ascii	"cannot open %s\012\000"
	.align	2
.LC13:
	.ascii	"\000"
	.align	2
.LC14:
	.ascii	"wrong file format\000"
	.align	2
.LC15:
	.ascii	"|\000"
	.global	__aeabi_dcmpeq
	.global	__aeabi_ddiv
	.global	__aeabi_dcmpge
	.global	__aeabi_dcmplt
	.global	__aeabi_dadd
	.text
	.align	2
	.global	read_bed_file
	.syntax unified
	.arm
	.fpu softvfp
	.type	read_bed_file, %function
read_bed_file:
	@ args = 0, pretend = 0, frame = 120
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #120
	str	r0, [fp, #-120]
	mov	r3, #0
	str	r3, [fp, #-112]
	mvn	r3, #0
	str	r3, [fp, #-108]
	mov	r0, #4
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-104]
	mov	r0, #4
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-100]
	ldr	r3, .L66
	ldr	r3, [r3]
	mov	r1, r3
	ldr	r0, [fp, #-104]
	bl	strcpy
	ldr	r3, .L66
	ldr	r3, [r3]
	mov	r1, r3
	ldr	r0, [fp, #-100]
	bl	strcpy
	ldr	r1, .L66+4
	ldr	r0, [fp, #-120]
	bl	fopen
	str	r0, [fp, #-28]
	ldr	r3, [fp, #-28]
	cmp	r3, #0
	bne	.L19
	ldr	r1, [fp, #-120]
	ldr	r0, .L66+8
	bl	printf
	b	.L63
.L19:
	mov	r3, #0
	str	r3, [fp, #-96]
	mov	r3, #1
	str	r3, [fp, #-92]
	ldr	r3, .L66+12
	str	r3, [fp, #-88]
	ldr	r0, [fp, #-88]
	bl	strlen
	str	r0, [fp, #-84]
	ldr	r3, [fp, #-84]
	add	r3, r3, #2
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-80]
	ldr	r1, [fp, #-88]
	ldr	r0, [fp, #-80]
	bl	strcpy
	ldr	r2, [fp, #-80]
	ldr	r3, [fp, #-84]
	add	r3, r2, r3
	ldrb	r2, [fp, #-113]
	strb	r2, [r3]
	ldr	r3, [fp, #-84]
	add	r3, r3, #1
	ldr	r2, [fp, #-80]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	b	.L21
.L65:
	ldr	r3, [fp, #-92]
	cmp	r3, #1
	bne	.L22
	mov	r3, #1
	str	r3, [fp, #-96]
.L22:
	ldrb	r3, [fp, #-113]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L23
	ldr	r3, [fp, #-96]
	cmp	r3, #1
	beq	.L23
	mov	r3, #0
	str	r3, [fp, #-64]
	mov	r2, #0
	ldr	r3, .L66+16
	str	r2, [fp, #-12]
	str	r3, [fp, #-8]
	ldr	r3, .L66+20
	ldr	r3, [r3]
	cmp	r3, #1
	bne	.L24
	ldr	r3, .L66+24
	ldr	r3, [r3]
	mov	r1, r3
	ldr	r0, [fp, #-80]
	bl	strtok
	str	r0, [fp, #-52]
	mov	r3, #0
	str	r3, [fp, #-48]
	b	.L25
.L32:
	ldr	r3, [fp, #-48]
	cmp	r3, #0
	bne	.L26
	ldr	r0, [fp, #-52]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-76]
	ldr	r1, [fp, #-52]
	ldr	r0, [fp, #-76]
	bl	strcpy
.L26:
	ldr	r3, [fp, #-48]
	cmp	r3, #1
	bne	.L27
	ldr	r0, [fp, #-52]
	bl	atoi
	str	r0, [fp, #-60]
.L27:
	ldr	r3, [fp, #-48]
	cmp	r3, #2
	bne	.L28
	ldr	r0, [fp, #-52]
	bl	atoi
	str	r0, [fp, #-56]
.L28:
	ldr	r3, [fp, #-48]
	cmp	r3, #3
	bne	.L29
	ldr	r0, [fp, #-52]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-72]
	ldr	r1, [fp, #-52]
	ldr	r0, [fp, #-72]
	bl	strcpy
.L29:
	ldr	r3, [fp, #-48]
	cmp	r3, #4
	bne	.L30
	ldr	r0, [fp, #-52]
	bl	atof
	str	r0, [fp, #-20]
	str	r1, [fp, #-16]
.L30:
	ldr	r3, [fp, #-48]
	cmp	r3, #5
	bne	.L31
	ldr	r0, [fp, #-52]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-68]
	ldr	r1, [fp, #-52]
	ldr	r0, [fp, #-68]
	bl	strcpy
.L31:
	ldr	r3, [fp, #-48]
	add	r3, r3, #1
	str	r3, [fp, #-48]
	ldr	r3, .L66+24
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #0
	bl	strtok
	str	r0, [fp, #-52]
.L25:
	ldr	r3, [fp, #-52]
	cmp	r3, #0
	bne	.L32
	ldr	r3, [fp, #-68]
	cmp	r3, #0
	bne	.L33
	ldr	r0, .L66+28
	bl	puts
	bl	printUsage
	mov	r0, #0
	bl	exit
.L24:
	ldr	r3, .L66+20
	ldr	r3, [r3]
	cmp	r3, #2
	bne	.L33
	ldr	r3, .L66+24
	ldr	r3, [r3]
	mov	r1, r3
	ldr	r0, [fp, #-80]
	bl	strtok
	str	r0, [fp, #-44]
	mov	r3, #0
	str	r3, [fp, #-40]
	b	.L34
.L41:
	ldr	r3, [fp, #-40]
	cmp	r3, #1
	bne	.L35
	ldr	r0, [fp, #-44]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-64]
	ldr	r1, [fp, #-44]
	ldr	r0, [fp, #-64]
	bl	strcpy
.L35:
	ldr	r3, [fp, #-40]
	cmp	r3, #9
	bne	.L36
	ldr	r0, [fp, #-44]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-68]
	ldr	r1, [fp, #-44]
	ldr	r0, [fp, #-68]
	bl	strcpy
.L36:
	ldr	r3, [fp, #-40]
	cmp	r3, #10
	bne	.L37
	ldr	r0, [fp, #-44]
	bl	atoi
	str	r0, [fp, #-60]
.L37:
	ldr	r3, [fp, #-40]
	cmp	r3, #11
	bne	.L38
	ldr	r0, [fp, #-44]
	bl	atoi
	str	r0, [fp, #-56]
.L38:
	ldr	r3, [fp, #-40]
	cmp	r3, #12
	bne	.L39
	ldr	r0, [fp, #-44]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-76]
	ldr	r1, [fp, #-44]
	ldr	r0, [fp, #-76]
	bl	strcpy
.L39:
	ldr	r3, [fp, #-40]
	cmp	r3, #14
	bne	.L40
	ldr	r0, [fp, #-44]
	bl	atof
	str	r0, [fp, #-12]
	str	r1, [fp, #-8]
.L40:
	ldr	r3, [fp, #-40]
	add	r3, r3, #1
	str	r3, [fp, #-40]
	ldr	r3, .L66+24
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #0
	bl	strtok
	str	r0, [fp, #-44]
.L34:
	ldr	r3, [fp, #-44]
	cmp	r3, #0
	bne	.L41
	ldr	r1, .L66+32
	ldr	r0, [fp, #-64]
	bl	strtok
	str	r0, [fp, #-36]
	mov	r3, #0
	str	r3, [fp, #-32]
	b	.L42
.L45:
	ldr	r3, [fp, #-32]
	cmp	r3, #0
	bne	.L43
	ldr	r0, [fp, #-36]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-72]
	ldr	r1, [fp, #-36]
	ldr	r0, [fp, #-72]
	bl	strcpy
.L43:
	ldr	r3, [fp, #-32]
	cmp	r3, #1
	bne	.L44
	ldr	r0, [fp, #-36]
	bl	atof
	str	r0, [fp, #-20]
	str	r1, [fp, #-16]
.L44:
	ldr	r3, [fp, #-32]
	add	r3, r3, #1
	str	r3, [fp, #-32]
	ldr	r1, .L66+32
	mov	r0, #0
	bl	strtok
	str	r0, [fp, #-36]
.L42:
	ldr	r3, [fp, #-36]
	cmp	r3, #0
	bne	.L45
	ldr	r0, [fp, #-64]
	bl	free
	mov	r2, #0
	ldr	r3, .L66+16
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	bne	.L64
	sub	r3, fp, #12
	ldmia	r3, {r2-r3}
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	b	.L48
.L64:
	sub	r3, fp, #12
	ldmia	r3, {r2-r3}
	mov	r0, #0
	ldr	r1, .L66+36
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
.L48:
	ldr	r3, [fp, #-68]
	cmp	r3, #0
	bne	.L33
	ldr	r0, .L66+28
	bl	puts
	bl	printUsage
	mov	r0, #0
	bl	exit
.L33:
	ldr	r3, .L66+40
	ldmia	r3, {r2-r3}
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	beq	.L49
	ldr	r1, [fp, #-104]
	ldr	r0, [fp, #-76]
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L51
	ldr	r1, [fp, #-100]
	ldr	r0, [fp, #-68]
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L51
	ldr	r2, [fp, #-60]
	ldr	r3, [fp, #-108]
	sub	r2, r2, r3
	ldr	r3, .L66+44
	ldr	r3, [r3]
	cmp	r2, r3
	ble	.L52
.L51:
	ldr	r3, .L66+48
	ldr	r3, [r3]
	mov	r0, r3
	bl	__aeabi_i2d
	ldr	r3, .L66+52
	ldmia	r3, {r2-r3}
	bl	__aeabi_dcmplt
	mov	r3, r0
	cmp	r3, #0
	beq	.L53
	ldr	r0, [fp, #-112]
	bl	assignReadsToBlocks
	ldr	r0, [fp, #-112]
	bl	writeBlocks
.L53:
	ldr	r0, [fp, #-112]
	bl	freeList
	mov	r3, #0
	str	r3, [fp, #-112]
	ldr	r2, .L66+56
	ldr	r3, [fp, #-60]
	str	r3, [r2]
	ldr	r2, .L66+60
	ldr	r3, [fp, #-56]
	str	r3, [r2]
	ldr	r1, .L66+52
	sub	r3, fp, #20
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	ldr	r3, .L66+64
	mov	r2, #1
	str	r2, [r3]
	b	.L55
.L52:
	ldr	r3, .L66+56
	ldr	r3, [r3]
	ldr	r2, [fp, #-60]
	cmp	r2, r3
	bge	.L56
	ldr	r2, .L66+56
	ldr	r3, [fp, #-60]
	str	r3, [r2]
.L56:
	ldr	r3, .L66+60
	ldr	r3, [r3]
	ldr	r2, [fp, #-56]
	cmp	r2, r3
	ble	.L57
	ldr	r2, .L66+60
	ldr	r3, [fp, #-56]
	str	r3, [r2]
.L57:
	ldr	r3, .L66+52
	ldmia	r3, {r0-r1}
	sub	r3, fp, #20
	ldmia	r3, {r2-r3}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L66+52
	stm	r1, {r2-r3}
	ldr	r3, .L66+64
	ldr	r3, [r3]
	add	r3, r3, #1
	ldr	r2, .L66+64
	str	r3, [r2]
.L55:
	mov	r3, #0
	str	r3, [fp, #-24]
	mov	r0, #40
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-24]
	ldr	r0, [fp, #-76]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, [fp, #-24]
	str	r2, [r3]
	ldr	r3, [fp, #-24]
	ldr	r3, [r3]
	ldr	r1, [fp, #-76]
	mov	r0, r3
	bl	strcpy
	ldr	r0, [fp, #-72]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, [fp, #-24]
	str	r2, [r3, #24]
	ldr	r3, [fp, #-24]
	ldr	r3, [r3, #24]
	ldr	r1, [fp, #-72]
	mov	r0, r3
	bl	strcpy
	ldr	r0, [fp, #-68]
	bl	strlen
	mov	r3, r0
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, [fp, #-24]
	str	r2, [r3, #28]
	ldr	r3, [fp, #-24]
	ldr	r3, [r3, #28]
	ldr	r1, [fp, #-68]
	mov	r0, r3
	bl	strcpy
	ldr	r3, [fp, #-24]
	ldr	r2, [fp, #-60]
	str	r2, [r3, #4]
	ldr	r3, [fp, #-24]
	ldr	r2, [fp, #-56]
	str	r2, [r3, #8]
	ldr	r1, [fp, #-24]
	sub	r3, fp, #20
	ldmia	r3, {r2-r3}
	str	r2, [r1, #16]
	str	r3, [r1, #20]
	ldr	r3, [fp, #-24]
	mvn	r2, #0
	str	r2, [r3, #12]
	ldr	r3, [fp, #-24]
	ldr	r2, [fp, #-112]
	str	r2, [r3, #32]
	ldr	r3, [fp, #-24]
	str	r3, [fp, #-112]
	ldr	r3, .L66+68
	ldr	r3, [r3]
	mov	r1, #4
	mov	r0, r3
	bl	realloc
	mov	r3, r0
	ldr	r2, .L66+68
	str	r3, [r2]
	ldr	r3, .L66+68
	ldr	r3, [r3]
	ldr	r1, [fp, #-76]
	mov	r0, r3
	bl	strcpy
	ldr	r3, .L66+72
	ldr	r3, [r3]
	mov	r1, #4
	mov	r0, r3
	bl	realloc
	mov	r3, r0
	ldr	r2, .L66+72
	str	r3, [r2]
	ldr	r3, .L66+72
	ldr	r3, [r3]
	ldr	r1, [fp, #-68]
	mov	r0, r3
	bl	strcpy
	mov	r1, #4
	ldr	r0, [fp, #-104]
	bl	realloc
	str	r0, [fp, #-104]
	ldr	r1, [fp, #-76]
	ldr	r0, [fp, #-104]
	bl	strcpy
	mov	r1, #4
	ldr	r0, [fp, #-100]
	bl	realloc
	str	r0, [fp, #-100]
	ldr	r1, [fp, #-68]
	ldr	r0, [fp, #-100]
	bl	strcpy
	ldr	r3, [fp, #-56]
	str	r3, [fp, #-108]
.L49:
	ldr	r0, [fp, #-76]
	bl	free
	ldr	r0, [fp, #-68]
	bl	free
	ldr	r0, [fp, #-72]
	bl	free
	mov	r3, #1
	str	r3, [fp, #-92]
	ldr	r3, [fp, #-80]
	mov	r2, #0
	strb	r2, [r3]
	ldr	r0, [fp, #-80]
	bl	strlen
	str	r0, [fp, #-84]
	b	.L21
.L23:
	ldrb	r3, [fp, #-113]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L58
	ldr	r3, [fp, #-96]
	cmp	r3, #1
	bne	.L58
	ldr	r0, [fp, #-88]
	bl	free
	ldr	r3, .L66+12
	str	r3, [fp, #-88]
	mov	r3, #0
	str	r3, [fp, #-96]
	mov	r3, #1
	str	r3, [fp, #-92]
	b	.L21
.L58:
	ldr	r3, [fp, #-84]
	add	r3, r3, #2
	mov	r1, r3
	ldr	r0, [fp, #-80]
	bl	realloc
	str	r0, [fp, #-80]
	ldr	r2, [fp, #-80]
	ldr	r3, [fp, #-84]
	add	r3, r2, r3
	ldrb	r2, [fp, #-113]
	strb	r2, [r3]
	ldr	r3, [fp, #-84]
	add	r3, r3, #1
	ldr	r2, [fp, #-80]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	ldr	r0, [fp, #-80]
	bl	strlen
	str	r0, [fp, #-84]
	mov	r3, #0
	str	r3, [fp, #-92]
.L21:
	ldr	r0, [fp, #-28]
	bl	getc
	mov	r3, r0
	strb	r3, [fp, #-113]
	ldrb	r3, [fp, #-113]	@ zero_extendqisi2
	cmp	r3, #35
	bne	.L22
	b	.L65
.L63:
	ldr	r0, [fp, #-104]
	bl	free
	ldr	r0, [fp, #-100]
	bl	free
	ldr	r0, [fp, #-28]
	bl	fclose
	nop
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
.L67:
	.align	2
.L66:
	.word	initChrom
	.word	.LC11
	.word	.LC12
	.word	.LC13
	.word	-1074790400
	.word	type
	.word	sep
	.word	.LC14
	.word	.LC15
	.word	1072693248
	.word	tagFilter
	.word	distance
	.word	minClusterHeight
	.word	clusterHeight
	.word	clusterStart
	.word	clusterEnd
	.word	tagCount
	.word	clusterChrom
	.word	clusterStrand
	.size	read_bed_file, .-read_bed_file
	.section	.rodata
	.align	2
.LC16:
	.ascii	"# blockbuster result file generated %s# query file:"
	.ascii	" %s\012# scale: %.1f, minblockheight: %i, mergeDist"
	.ascii	"ance: %i\012# block_number\011chromosome\011start_o"
	.ascii	"f_block\011end_of_block\011strand\011readIDs\012\000"
	.align	2
.LC17:
	.word	__stack_chk_guard
	.text
	.align	2
	.global	writeHeader
	.syntax unified
	.arm
	.fpu softvfp
	.type	writeHeader, %function
writeHeader:
	@ args = 0, pretend = 0, frame = 16
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #32
	str	r0, [fp, #-16]
	ldr	r3, .L70
	ldr	r3, [r3]
	str	r3, [fp, #-8]
	mov	r3,#0
	mov	r0, #0
	bl	time
	mov	r3, r0
	str	r3, [fp, #-12]
	sub	r3, fp, #12
	mov	r0, r3
	bl	ctime
	mov	ip, r0
	ldr	r3, .L70+4
	ldmia	r3, {r2-r3}
	ldr	r1, .L70+8
	ldr	r1, [r1]
	ldr	r0, .L70+12
	ldr	r0, [r0]
	str	r0, [sp, #12]
	str	r1, [sp, #8]
	stm	sp, {r2-r3}
	ldr	r2, [fp, #-16]
	mov	r1, ip
	ldr	r0, .L70+16
	bl	printf
	nop
	ldr	r3, .L70
	ldr	r2, [r3]
	ldr	r3, [fp, #-8]
	eors	r2, r3, r2
	mov	r3, #0
	beq	.L69
	bl	__stack_chk_fail
.L69:
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
.L71:
	.align	2
.L70:
	.word	.LC17
	.word	sizescale
	.word	minblockheight
	.word	merge
	.word	.LC16
	.size	writeHeader, .-writeHeader
	.section	.rodata
	.align	2
.LC18:
	.ascii	"\012usage: blockbuster.x [OPTIONS] <file>\000"
	.align	2
.LC19:
	.ascii	"Detect blocks of overlapping reads using a gaussian"
	.ascii	"distribution approach\012\000"
	.align	2
.LC20:
	.ascii	"[OPTIONS]\000"
	.align	2
.LC21:
	.ascii	"-format <int>              file format of input fil"
	.ascii	"e (default: 1)\000"
	.align	2
.LC22:
	.ascii	"                            (1) bed\000"
	.align	2
.LC23:
	.ascii	"                            (2) segemehl-output\000"
	.align	2
.LC24:
	.ascii	"-distance <int>            minimum distance between"
	.ascii	" two clusters (default: 30)\000"
	.align	2
.LC25:
	.ascii	"-minClusterHeight <double> minimum height of a clus"
	.ascii	"ter (default: 10)\000"
	.align	2
.LC26:
	.ascii	"-minBlockHeight <double>   minimum height of a bloc"
	.ascii	"k (default: 2)\000"
	.align	2
.LC27:
	.ascii	"-scale <int>               scale stddev for a singl"
	.ascii	"e read (default: 0.2)\000"
	.align	2
.LC28:
	.ascii	"-merge <int>               merge reads with almost "
	.ascii	"similar means (default: 0)\000"
	.align	2
.LC29:
	.ascii	"-tagFilter <int>           skip tags with expressio"
	.ascii	"n smaller than this value (default: 0)\000"
	.align	2
.LC30:
	.ascii	"-print <int>               print out: (1) blocks (2"
	.ascii	") reads (default: 1)\012\000"
	.align	2
.LC31:
	.ascii	"[COMPLAINT DEPARTMENT]\000"
	.align	2
.LC32:
	.ascii	"Please be nice when complaining to david@bioinf.uni"
	.ascii	"-leipzig.de\000"
	.align	2
.LC33:
	.ascii	"or steve@bioinf.uni-leipzig.de\012\000"
	.text
	.align	2
	.global	printUsage
	.syntax unified
	.arm
	.fpu softvfp
	.type	printUsage, %function
printUsage:
	@ args = 0, pretend = 0, frame = 0
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	ldr	r0, .L73
	bl	puts
	ldr	r0, .L73+4
	bl	puts
	ldr	r0, .L73+8
	bl	puts
	ldr	r0, .L73+12
	bl	puts
	ldr	r0, .L73+16
	bl	puts
	ldr	r0, .L73+20
	bl	puts
	ldr	r0, .L73+24
	bl	puts
	ldr	r0, .L73+28
	bl	puts
	ldr	r0, .L73+32
	bl	puts
	ldr	r0, .L73+36
	bl	puts
	ldr	r0, .L73+40
	bl	puts
	ldr	r0, .L73+44
	bl	puts
	ldr	r0, .L73+48
	bl	puts
	ldr	r0, .L73+52
	bl	puts
	ldr	r0, .L73+56
	bl	puts
	ldr	r0, .L73+60
	bl	puts
	nop
	pop	{fp, pc}
.L74:
	.align	2
.L73:
	.word	.LC18
	.word	.LC19
	.word	.LC20
	.word	.LC21
	.word	.LC22
	.word	.LC23
	.word	.LC24
	.word	.LC25
	.word	.LC26
	.word	.LC27
	.word	.LC28
	.word	.LC29
	.word	.LC30
	.word	.LC31
	.word	.LC32
	.word	.LC33
	.size	printUsage, .-printUsage
	.section	.rodata
	.align	2
.LC34:
	.word	__stack_chk_guard
	.text
	.align	2
	.global	assignReadsToBlocks
	.syntax unified
	.arm
	.fpu softvfp
	.type	assignReadsToBlocks, %function
assignReadsToBlocks:
	@ args = 0, pretend = 0, frame = 48
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, fp, lr}
	add	fp, sp, #8
	sub	sp, sp, #52
	str	r0, [fp, #-56]
	ldr	r3, .L82
	ldr	r3, [r3]
	str	r3, [fp, #-16]
	mov	r3,#0
	mov	r3, sp
	mov	r4, r3
	mov	r3, #1
	str	r3, [fp, #-40]
	ldr	r3, .L82+4
	ldr	r2, [r3]
	ldr	r3, .L82+8
	ldr	r3, [r3]
	sub	r3, r2, r3
	str	r3, [fp, #-36]
	ldr	ip, [fp, #-36]
	sub	r3, ip, #1
	str	r3, [fp, #-32]
	mov	r3, ip
	mov	r0, r3
	mov	r1, #0
	mov	r2, #0
	mov	r3, #0
	lsl	r3, r1, #6
	orr	r3, r3, r0, lsr #26
	lsl	r2, r0, #6
	mov	r3, ip
	mov	r0, r3
	mov	r1, #0
	mov	r2, #0
	mov	r3, #0
	lsl	r3, r1, #6
	orr	r3, r3, r0, lsr #26
	lsl	r2, r0, #6
	mov	r3, ip
	lsl	r3, r3, #3
	add	r3, r3, #7
	lsr	r3, r3, #3
	lsl	r3, r3, #3
	sub	sp, sp, r3
	mov	r3, sp
	add	r3, r3, #7
	lsr	r3, r3, #3
	lsl	r3, r3, #3
	str	r3, [fp, #-28]
	mov	r3, #1
	str	r3, [fp, #-44]
	mov	r3, #0
	str	r3, [fp, #-48]
	b	.L76
.L80:
	ldr	r0, [fp, #-56]
	bl	getRest
	str	r0, [fp, #-44]
	mov	r3, #0
	str	r3, [fp, #-52]
	mov	r3, #0
	str	r3, [fp, #-52]
	b	.L77
.L78:
	ldr	r2, [fp, #-28]
	ldr	r3, [fp, #-52]
	lsl	r3, r3, #3
	add	r1, r2, r3
	mov	r2, #0
	mov	r3, #0
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-52]
	add	r3, r3, #1
	str	r3, [fp, #-52]
.L77:
	ldr	r2, [fp, #-52]
	ldr	r3, [fp, #-36]
	cmp	r2, r3
	blt	.L78
	ldr	r2, [fp, #-36]
	ldr	r1, [fp, #-28]
	ldr	r0, [fp, #-56]
	bl	writeSuperGaussian
	ldr	r1, [fp, #-36]
	ldr	r0, [fp, #-28]
	bl	getHighestPeak
	str	r0, [fp, #-24]
	ldr	r3, .L82+12
	ldr	r2, [r3]
	ldr	r3, [fp, #-40]
	ldr	r1, [fp, #-24]
	ldr	r0, [fp, #-56]
	bl	assignReads
	str	r0, [fp, #-20]
	ldr	r3, [fp, #-20]
	cmp	r3, #0
	beq	.L79
	ldr	r3, [fp, #-40]
	add	r3, r3, #1
	str	r3, [fp, #-40]
.L79:
	ldr	r0, [fp, #-56]
	bl	getRest
	str	r0, [fp, #-48]
.L76:
	ldr	r2, [fp, #-44]
	ldr	r3, [fp, #-48]
	cmp	r2, r3
	bne	.L80
	mov	sp, r4
	nop
	ldr	r3, .L82
	ldr	r2, [r3]
	ldr	r3, [fp, #-16]
	eors	r2, r3, r2
	mov	r3, #0
	beq	.L81
	bl	__stack_chk_fail
.L81:
	sub	sp, fp, #8
	@ sp needed
	pop	{r4, fp, pc}
.L83:
	.align	2
.L82:
	.word	.LC34
	.word	clusterEnd
	.word	clusterStart
	.word	readCount
	.size	assignReadsToBlocks, .-assignReadsToBlocks
	.global	__aeabi_dmul
	.global	__aeabi_dsub
	.align	2
	.global	gaussian
	.syntax unified
	.arm
	.fpu softvfp
	.type	gaussian, %function
gaussian:
	@ args = 8, pretend = 0, frame = 16
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, r6, r7, fp, lr}
	add	fp, sp, #20
	sub	sp, sp, #16
	str	r0, [fp, #-28]
	str	r1, [fp, #-24]
	str	r2, [fp, #-36]
	str	r3, [fp, #-32]
	ldr	r3, .L86
	ldmia	r3, {r0-r1}
	mov	r2, r0
	mov	r3, r1
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	sqrt
	ldmib	fp, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r0, #0
	ldr	r1, .L86+4
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	mov	r6, r2
	mov	r7, r3
	sub	r3, fp, #36
	ldmia	r3, {r2-r3}
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	mov	r2, #0
	mov	r3, #1073741824
	bl	pow
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	eor	r5, r3, #-2147483648
	mov	r2, #0
	mov	r3, #1073741824
	ldmib	fp, {r0-r1}
	bl	pow
	mov	r2, r0
	mov	r3, r1
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	exp
	mov	r2, r0
	mov	r3, r1
	mov	r0, r6
	mov	r1, r7
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	sub	sp, fp, #20
	@ sp needed
	pop	{r4, r5, r6, r7, fp, pc}
.L87:
	.align	2
.L86:
	.word	pi
	.word	1072693248
	.size	gaussian, .-gaussian
	.align	2
	.global	getHighestPeak
	.syntax unified
	.arm
	.fpu softvfp
	.type	getHighestPeak, %function
getHighestPeak:
	@ args = 0, pretend = 0, frame = 24
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #24
	str	r0, [fp, #-24]
	str	r1, [fp, #-28]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-12]
	str	r3, [fp, #-8]
	mov	r3, #0
	str	r3, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-20]
	b	.L89
.L92:
	ldr	r3, [fp, #-20]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-24]
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	sub	r1, fp, #12
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmplt
	mov	r3, r0
	cmp	r3, #0
	beq	.L90
	ldr	r3, [fp, #-20]
	str	r3, [fp, #-16]
	ldr	r3, [fp, #-20]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-24]
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	str	r2, [fp, #-12]
	str	r3, [fp, #-8]
.L90:
	ldr	r3, [fp, #-20]
	add	r3, r3, #1
	str	r3, [fp, #-20]
.L89:
	ldr	r2, [fp, #-20]
	ldr	r3, [fp, #-28]
	cmp	r2, r3
	blt	.L92
	ldr	r3, [fp, #-16]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-24]
	add	r1, r2, r3
	mov	r2, #0
	mov	r3, #0
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-16]
	mov	r0, r3
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
	.size	getHighestPeak, .-getHighestPeak
	.align	2
	.global	getRest
	.syntax unified
	.arm
	.fpu softvfp
	.type	getRest, %function
getRest:
	@ args = 0, pretend = 0, frame = 16
	@ frame_needed = 1, uses_anonymous_args = 0
	@ link register save eliminated.
	str	fp, [sp, #-4]!
	add	fp, sp, #0
	sub	sp, sp, #20
	str	r0, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-8]
	b	.L96
.L98:
	ldr	r3, [fp, #-16]
	ldr	r3, [r3, #12]
	cmn	r3, #1
	bne	.L97
	ldr	r3, [fp, #-8]
	add	r3, r3, #1
	str	r3, [fp, #-8]
.L97:
	ldr	r3, [fp, #-16]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-16]
.L96:
	ldr	r3, [fp, #-16]
	cmp	r3, #0
	bne	.L98
	ldr	r3, [fp, #-8]
	mov	r0, r3
	add	sp, fp, #0
	@ sp needed
	ldr	fp, [sp], #4
	bx	lr
	.size	getRest, .-getRest
	.global	__aeabi_d2iz
	.global	__aeabi_dcmple
	.align	2
	.global	writeSuperGaussian
	.syntax unified
	.arm
	.fpu softvfp
	.type	writeSuperGaussian, %function
writeSuperGaussian:
	@ args = 0, pretend = 0, frame = 56
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, r6, fp, lr}
	add	fp, sp, #16
	sub	sp, sp, #68
	str	r0, [fp, #-64]
	str	r1, [fp, #-68]
	str	r2, [fp, #-72]
	b	.L101
.L109:
	ldr	r3, [fp, #-64]
	ldr	r3, [r3, #12]
	cmn	r3, #1
	bne	.L102
	ldr	r3, [fp, #-64]
	ldr	r2, [r3, #4]
	ldr	r3, [fp, #-64]
	ldr	r3, [r3, #8]
	add	r3, r2, r3
	lsr	r2, r3, #31
	add	r3, r2, r3
	asr	r3, r3, #1
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r4, r0
	mov	r5, r1
	ldr	r3, .L110
	ldr	r3, [r3]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	ldr	r3, [fp, #-64]
	ldr	r2, [r3, #8]
	ldr	r3, [fp, #-64]
	ldr	r3, [r3, #4]
	sub	r3, r2, r3
	cmp	r3, #0
	rsblt	r3, r3, #0
	lsr	r2, r3, #31
	add	r3, r2, r3
	asr	r3, r3, #1
	mov	r0, r3
	bl	__aeabi_i2d
	ldr	r3, .L110+4
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-44]
	str	r3, [fp, #-40]
	mov	r3, #0
	str	r3, [fp, #-56]
	mov	r3, #0
	str	r3, [fp, #-56]
	b	.L103
.L108:
	ldr	r0, [fp, #-56]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-36]
	str	r3, [fp, #-32]
	ldr	r3, [fp, #-64]
	add	r5, r3, #16
	ldmia	r5, {r4-r5}
	sub	r3, fp, #44
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	sub	r3, fp, #52
	ldmia	r3, {r2-r3}
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	gaussian
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-28]
	str	r3, [fp, #-24]
	ldr	r3, [fp, #-56]
	cmp	r3, #0
	bne	.L104
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r2, r0
	ldr	r3, [fp, #-72]
	cmp	r3, r2
	bgt	.L105
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r3, r0
	cmp	r3, #0
	ble	.L106
.L105:
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r3, r2, r3
	ldmia	r3, {r4-r5}
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r6, r2, r3
	sub	r3, fp, #28
	ldmia	r3, {r2-r3}
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	stm	r6, {r2-r3}
	b	.L106
.L104:
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r2, r0
	ldr	r3, [fp, #-72]
	cmp	r3, r2
	ble	.L107
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r3, r2, r3
	ldmia	r3, {r4-r5}
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r6, r2, r3
	sub	r3, fp, #28
	ldmia	r3, {r2-r3}
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	stm	r6, {r2-r3}
.L107:
	ldr	r0, [fp, #-56]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	__aeabi_d2iz
	mov	r3, r0
	cmp	r3, #0
	ble	.L106
	ldr	r0, [fp, #-56]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r3, r2, r3
	ldmia	r3, {r4-r5}
	ldr	r0, [fp, #-56]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	__aeabi_d2iz
	mov	r3, r0
	lsl	r3, r3, #3
	ldr	r2, [fp, #-68]
	add	r6, r2, r3
	sub	r3, fp, #28
	ldmia	r3, {r2-r3}
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	stm	r6, {r2-r3}
.L106:
	ldr	r3, [fp, #-56]
	add	r3, r3, #1
	str	r3, [fp, #-56]
.L103:
	ldr	r0, [fp, #-56]
	bl	__aeabi_i2d
	mov	r4, r0
	mov	r5, r1
	sub	r1, fp, #44
	ldmia	r1, {r0-r1}
	mov	r2, r0
	mov	r3, r1
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dcmple
	mov	r3, r0
	cmp	r3, #0
	bne	.L108
.L102:
	ldr	r3, [fp, #-64]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-64]
.L101:
	ldr	r3, [fp, #-64]
	cmp	r3, #0
	bne	.L109
	nop
	nop
	sub	sp, fp, #16
	@ sp needed
	pop	{r4, r5, r6, fp, pc}
.L111:
	.align	2
.L110:
	.word	clusterStart
	.word	sizescale
	.size	writeSuperGaussian, .-writeSuperGaussian
	.align	2
	.global	assignReads
	.syntax unified
	.arm
	.fpu softvfp
	.type	assignReads, %function
assignReads:
	@ args = 0, pretend = 0, frame = 72
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, fp, lr}
	add	fp, sp, #12
	sub	sp, sp, #72
	str	r0, [fp, #-72]
	str	r1, [fp, #-76]
	str	r2, [fp, #-80]
	str	r3, [fp, #-84]
	ldr	r3, .L128
	ldr	r3, [r3]
	lsl	r3, r3, #3
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-44]
	ldr	r3, .L128
	ldr	r3, [r3]
	lsl	r3, r3, #3
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-40]
	mov	r3, #0
	str	r3, [fp, #-64]
	mov	r3, #0
	str	r3, [fp, #-60]
	b	.L113
.L114:
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-44]
	add	r1, r2, r3
	mov	r2, #0
	ldr	r3, .L128+4
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r1, r2, r3
	mov	r2, #0
	ldr	r3, .L128+4
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-60]
	add	r3, r3, #1
	str	r3, [fp, #-60]
.L113:
	ldr	r3, .L128
	ldr	r3, [r3]
	ldr	r2, [fp, #-60]
	cmp	r2, r3
	blt	.L114
	mov	r3, #0
	str	r3, [fp, #-56]
	mvn	r3, #0
	str	r3, [fp, #-52]
	b	.L115
.L124:
	ldr	r3, .L128
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, [fp, #-40]
	ldr	r0, [fp, #-44]
	bl	stddev
	str	r0, [fp, #-36]
	str	r1, [fp, #-32]
	ldr	r3, [fp, #-56]
	str	r3, [fp, #-52]
	ldr	r3, [fp, #-72]
	str	r3, [fp, #-48]
	b	.L116
.L123:
	ldr	r3, [fp, #-48]
	ldr	r3, [r3, #12]
	cmn	r3, #1
	bne	.L117
	ldr	r3, [fp, #-48]
	ldr	r2, [r3, #4]
	ldr	r3, [fp, #-48]
	ldr	r3, [r3, #8]
	add	r3, r2, r3
	lsr	r2, r3, #31
	add	r3, r2, r3
	asr	r3, r3, #1
	mov	r2, r3
	ldr	r3, .L128+8
	ldr	r3, [r3]
	sub	r3, r2, r3
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-28]
	str	r3, [fp, #-24]
	ldr	r3, [fp, #-48]
	ldr	r2, [r3, #8]
	ldr	r3, [fp, #-48]
	ldr	r3, [r3, #4]
	sub	r3, r2, r3
	cmp	r3, #0
	rsblt	r3, r3, #0
	lsr	r2, r3, #31
	add	r3, r2, r3
	asr	r3, r3, #1
	mov	r0, r3
	bl	__aeabi_i2d
	ldr	r3, .L128+12
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	sub	r3, fp, #20
	ldmia	r3, {r2-r3}
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	sub	r3, fp, #36
	ldmia	r3, {r2-r3}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	mov	r5, r3
	ldr	r0, [fp, #-76]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dcmple
	mov	r3, r0
	cmp	r3, #0
	beq	.L118
	sub	r3, fp, #20
	ldmia	r3, {r2-r3}
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	sub	r3, fp, #36
	ldmia	r3, {r2-r3}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	mov	r5, r3
	ldr	r0, [fp, #-76]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	bne	.L120
.L118:
	ldr	r3, .L128+16
	ldr	r3, [r3]
	ldr	r2, [fp, #-76]
	sub	r3, r2, r3
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	beq	.L117
	ldr	r3, .L128+16
	ldr	r2, [r3]
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmple
	mov	r3, r0
	cmp	r3, #0
	beq	.L117
.L120:
	ldr	r3, [fp, #-64]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-44]
	add	r1, r2, r3
	sub	r3, fp, #28
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-64]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r1, r2, r3
	ldr	r3, [fp, #-48]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-64]
	add	r3, r3, #1
	str	r3, [fp, #-64]
	ldr	r3, [fp, #-48]
	ldr	r2, [fp, #-84]
	str	r2, [r3, #12]
	ldr	r3, [fp, #-56]
	add	r3, r3, #1
	str	r3, [fp, #-56]
.L117:
	ldr	r3, [fp, #-48]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-48]
.L116:
	ldr	r3, [fp, #-48]
	cmp	r3, #0
	bne	.L123
.L115:
	ldr	r2, [fp, #-52]
	ldr	r3, [fp, #-56]
	cmp	r2, r3
	bne	.L124
	ldr	r0, [fp, #-44]
	bl	free
	ldr	r0, [fp, #-40]
	bl	free
	ldr	r3, [fp, #-56]
	mov	r0, r3
	sub	sp, fp, #12
	@ sp needed
	pop	{r4, r5, fp, pc}
.L129:
	.align	2
.L128:
	.word	tagCount
	.word	-1074790400
	.word	clusterStart
	.word	sizescale
	.word	merge
	.size	assignReads, .-assignReads
	.align	2
	.global	stddev
	.syntax unified
	.arm
	.fpu softvfp
	.type	stddev, %function
stddev:
	@ args = 0, pretend = 0, frame = 48
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #48
	str	r0, [fp, #-40]
	str	r1, [fp, #-44]
	str	r2, [fp, #-48]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-36]
	mov	r3, #0
	str	r3, [fp, #-32]
	b	.L131
.L136:
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	mov	r2, #0
	ldr	r3, .L147
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	bne	.L132
	mov	r3, #0
	str	r3, [fp, #-28]
	b	.L134
.L135:
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	ldr	r3, [fp, #-36]
	add	r3, r3, #1
	str	r3, [fp, #-36]
	ldr	r3, [fp, #-28]
	add	r3, r3, #1
	str	r3, [fp, #-28]
.L134:
	ldr	r0, [fp, #-28]
	bl	__aeabi_i2d
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-44]
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	bl	__aeabi_dcmplt
	mov	r3, r0
	cmp	r3, #0
	bne	.L135
.L132:
	ldr	r3, [fp, #-32]
	add	r3, r3, #1
	str	r3, [fp, #-32]
.L131:
	ldr	r2, [fp, #-32]
	ldr	r3, [fp, #-48]
	cmp	r2, r3
	blt	.L136
	ldr	r3, [fp, #-36]
	cmp	r3, #0
	bne	.L137
	mov	r2, #0
	mov	r3, #0
	b	.L138
.L137:
	ldr	r0, [fp, #-36]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-12]
	str	r3, [fp, #-8]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-32]
	b	.L139
.L144:
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	mov	r2, #0
	ldr	r3, .L147
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	bne	.L140
	mov	r3, #0
	str	r3, [fp, #-24]
	b	.L142
.L143:
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-40]
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	sub	r3, fp, #12
	ldmia	r3, {r2-r3}
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	mov	r2, #0
	mov	r3, #1073741824
	bl	pow
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	ldr	r3, [fp, #-24]
	add	r3, r3, #1
	str	r3, [fp, #-24]
.L142:
	ldr	r0, [fp, #-24]
	bl	__aeabi_i2d
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #3
	ldr	r2, [fp, #-44]
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	bl	__aeabi_dcmplt
	mov	r3, r0
	cmp	r3, #0
	bne	.L143
.L140:
	ldr	r3, [fp, #-32]
	add	r3, r3, #1
	str	r3, [fp, #-32]
.L139:
	ldr	r2, [fp, #-32]
	ldr	r3, [fp, #-48]
	cmp	r2, r3
	blt	.L144
	ldr	r0, [fp, #-36]
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	bl	sqrt
	mov	r2, r0
	mov	r3, r1
.L138:
	mov	r0, r2
	mov	r1, r3
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
.L148:
	.align	2
.L147:
	.word	-1074790400
	.size	stddev, .-stddev
	.section	.rodata
	.align	2
.LC35:
	.ascii	">cluster_%i\011%s\011%i\011%i\011%s\011%.2f\011%i\011"
	.ascii	"%i\012\000"
	.align	2
.LC36:
	.ascii	"\011%i\011%s\011%i\011%i\011%s\011%.2f\011%i\012\000"
	.align	2
.LC37:
	.ascii	"\011%s\011%d\011%d\011%s\011%lf\011%s\011%i\012\000"
	.text
	.align	2
	.global	writeBlocks
	.syntax unified
	.arm
	.fpu softvfp
	.type	writeBlocks, %function
writeBlocks:
	@ args = 0, pretend = 0, frame = 104
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, fp, lr}
	add	fp, sp, #12
	sub	sp, sp, #128
	str	r0, [fp, #-112]
	mov	r3, #0
	str	r3, [fp, #-108]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	mov	r3, #0
	str	r3, [fp, #-104]
	mov	r3, #0
	str	r3, [fp, #-100]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-44]
	str	r3, [fp, #-40]
	mov	r3, #0
	str	r3, [fp, #-96]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-36]
	str	r3, [fp, #-32]
	mov	r3, #1
	str	r3, [fp, #-92]
	b	.L150
.L155:
	ldr	r3, [fp, #-108]
	add	r3, r3, #1
	str	r3, [fp, #-108]
	mov	r3, #0
	str	r3, [fp, #-92]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-44]
	str	r3, [fp, #-40]
	mov	r3, #0
	str	r3, [fp, #-100]
	ldr	r3, [fp, #-112]
	str	r3, [fp, #-88]
	b	.L151
.L153:
	ldr	r3, [fp, #-88]
	ldr	r3, [r3, #12]
	ldr	r2, [fp, #-108]
	cmp	r2, r3
	bne	.L152
	ldr	r3, [fp, #-92]
	add	r3, r3, #1
	str	r3, [fp, #-92]
	ldr	r3, [fp, #-88]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	ldr	r3, [fp, #-88]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	sub	r1, fp, #44
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-44]
	str	r3, [fp, #-40]
	ldr	r3, [fp, #-100]
	add	r3, r3, #1
	str	r3, [fp, #-100]
.L152:
	ldr	r3, [fp, #-88]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-88]
.L151:
	ldr	r3, [fp, #-88]
	cmp	r3, #0
	bne	.L153
	ldr	r3, .L180
	ldr	r3, [r3]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	bne	.L176
	b	.L150
.L176:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	ble	.L150
	ldr	r3, [fp, #-104]
	add	r3, r3, #1
	str	r3, [fp, #-104]
	sub	r3, fp, #44
	ldmia	r3, {r2-r3}
	sub	r1, fp, #36
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-36]
	str	r3, [fp, #-32]
	ldr	r2, [fp, #-96]
	ldr	r3, [fp, #-100]
	add	r3, r2, r3
	str	r3, [fp, #-96]
.L150:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bgt	.L155
	ldr	r3, [fp, #-104]
	cmp	r3, #0
	ble	.L179
	ldr	r3, .L180+4
	ldr	r3, [r3]
	add	r3, r3, #1
	ldr	r2, .L180+4
	str	r3, [r2]
	ldr	r3, .L180+4
	ldr	ip, [r3]
	ldr	r3, .L180+8
	ldr	lr, [r3]
	ldr	r3, .L180+12
	ldr	r4, [r3]
	ldr	r3, .L180+16
	ldr	r1, [r3]
	ldr	r3, .L180+20
	ldr	r0, [r3]
	ldr	r3, [fp, #-104]
	str	r3, [sp, #20]
	ldr	r3, [fp, #-96]
	str	r3, [sp, #16]
	sub	r3, fp, #36
	ldmia	r3, {r2-r3}
	str	r2, [sp, #8]
	str	r3, [sp, #12]
	str	r0, [sp, #4]
	str	r1, [sp]
	mov	r3, r4
	mov	r2, lr
	mov	r1, ip
	ldr	r0, .L180+24
	bl	printf
	ldr	r3, .L180+28
	ldr	r3, [r3]
	cmp	r3, #1
	bne	.L157
	mov	r3, #0
	str	r3, [fp, #-108]
	mov	r3, #1
	str	r3, [fp, #-92]
	mov	r3, #0
	str	r3, [fp, #-84]
	b	.L158
.L166:
	ldr	r3, [fp, #-108]
	add	r3, r3, #1
	str	r3, [fp, #-108]
	mov	r3, #0
	str	r3, [fp, #-92]
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-28]
	str	r3, [fp, #-24]
	mov	r3, #0
	str	r3, [fp, #-80]
	mvn	r3, #0
	str	r3, [fp, #-76]
	mvn	r3, #0
	str	r3, [fp, #-72]
	ldr	r3, [fp, #-112]
	str	r3, [fp, #-68]
	b	.L159
.L164:
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #12]
	ldr	r2, [fp, #-108]
	cmp	r2, r3
	bne	.L160
	ldr	r3, [fp, #-76]
	cmn	r3, #1
	bne	.L161
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #4]
	str	r3, [fp, #-76]
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #8]
	str	r3, [fp, #-72]
.L161:
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #4]
	ldr	r2, [fp, #-76]
	cmp	r2, r3
	ble	.L162
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #4]
	str	r3, [fp, #-76]
.L162:
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #8]
	ldr	r2, [fp, #-72]
	cmp	r2, r3
	bge	.L163
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #8]
	str	r3, [fp, #-72]
.L163:
	ldr	r3, [fp, #-68]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-28]
	str	r3, [fp, #-24]
	ldr	r3, [fp, #-80]
	add	r3, r3, #1
	str	r3, [fp, #-80]
	ldr	r3, [fp, #-92]
	add	r3, r3, #1
	str	r3, [fp, #-92]
.L160:
	ldr	r3, [fp, #-68]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-68]
.L159:
	ldr	r3, [fp, #-68]
	cmp	r3, #0
	bne	.L164
	ldr	r3, .L180
	ldr	r3, [r3]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #28
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	bne	.L177
	b	.L158
.L177:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	ble	.L158
	ldr	r3, [fp, #-84]
	add	r3, r3, #1
	str	r3, [fp, #-84]
	ldr	r3, .L180+8
	ldr	r0, [r3]
	ldr	r3, .L180+20
	ldr	r1, [r3]
	ldr	r3, [fp, #-80]
	str	r3, [sp, #16]
	sub	r3, fp, #28
	ldmia	r3, {r2-r3}
	str	r2, [sp, #8]
	str	r3, [sp, #12]
	str	r1, [sp, #4]
	ldr	r3, [fp, #-72]
	str	r3, [sp]
	ldr	r3, [fp, #-76]
	mov	r2, r0
	ldr	r1, [fp, #-84]
	ldr	r0, .L180+32
	bl	printf
.L158:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bgt	.L166
.L157:
	ldr	r3, .L180+28
	ldr	r3, [r3]
	cmp	r3, #2
	bne	.L179
	mov	r3, #0
	str	r3, [fp, #-108]
	mov	r3, #1
	str	r3, [fp, #-92]
	mov	r3, #0
	str	r3, [fp, #-64]
	b	.L167
.L175:
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	ldr	r3, [fp, #-108]
	add	r3, r3, #1
	str	r3, [fp, #-108]
	mov	r3, #0
	str	r3, [fp, #-92]
	ldr	r3, [fp, #-112]
	str	r3, [fp, #-60]
	b	.L168
.L170:
	ldr	r3, [fp, #-60]
	ldr	r3, [r3, #12]
	ldr	r2, [fp, #-108]
	cmp	r2, r3
	bne	.L169
	ldr	r3, [fp, #-60]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-20]
	str	r3, [fp, #-16]
	ldr	r3, [fp, #-92]
	add	r3, r3, #1
	str	r3, [fp, #-92]
.L169:
	ldr	r3, [fp, #-60]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-60]
.L168:
	ldr	r3, [fp, #-60]
	cmp	r3, #0
	bne	.L170
	ldr	r3, .L180
	ldr	r3, [r3]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #20
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpge
	mov	r3, r0
	cmp	r3, #0
	bne	.L178
	b	.L167
.L178:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	ble	.L167
	ldr	r3, [fp, #-64]
	add	r3, r3, #1
	str	r3, [fp, #-64]
	ldr	r3, [fp, #-112]
	str	r3, [fp, #-56]
	b	.L172
.L174:
	ldr	r3, [fp, #-56]
	ldr	r3, [r3, #12]
	ldr	r2, [fp, #-108]
	cmp	r2, r3
	bne	.L173
	ldr	r3, [fp, #-56]
	ldr	lr, [r3]
	ldr	r3, [fp, #-56]
	ldr	r4, [r3, #4]
	ldr	r3, [fp, #-56]
	ldr	r5, [r3, #8]
	ldr	r3, [fp, #-56]
	ldr	r1, [r3, #24]
	ldr	r3, [fp, #-56]
	add	r3, r3, #16
	ldmia	r3, {r2-r3}
	ldr	r0, [fp, #-56]
	ldr	r0, [r0, #28]
	ldr	ip, [fp, #-64]
	str	ip, [sp, #20]
	str	r0, [sp, #16]
	str	r2, [sp, #8]
	str	r3, [sp, #12]
	str	r1, [sp]
	mov	r3, r5
	mov	r2, r4
	mov	r1, lr
	ldr	r0, .L180+36
	bl	printf
.L173:
	ldr	r3, [fp, #-56]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-56]
.L172:
	ldr	r3, [fp, #-56]
	cmp	r3, #0
	bne	.L174
.L167:
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bgt	.L175
.L179:
	nop
	sub	sp, fp, #12
	@ sp needed
	pop	{r4, r5, fp, pc}
.L181:
	.align	2
.L180:
	.word	minblockheight
	.word	clusterCounter
	.word	clusterChrom
	.word	clusterStart
	.word	clusterEnd
	.word	clusterStrand
	.word	.LC35
	.word	print
	.word	.LC36
	.word	.LC37
	.size	writeBlocks, .-writeBlocks
	.align	2
	.global	freeList
	.syntax unified
	.arm
	.fpu softvfp
	.type	freeList, %function
freeList:
	@ args = 0, pretend = 0, frame = 16
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #16
	str	r0, [fp, #-16]
	b	.L183
.L184:
	ldr	r3, [fp, #-16]
	ldr	r3, [r3, #32]
	str	r3, [fp, #-8]
	ldr	r3, [fp, #-16]
	ldr	r3, [r3, #24]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-16]
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-16]
	ldr	r3, [r3, #28]
	mov	r0, r3
	bl	free
	ldr	r0, [fp, #-16]
	bl	free
	ldr	r3, [fp, #-8]
	str	r3, [fp, #-16]
.L183:
	ldr	r3, [fp, #-16]
	cmp	r3, #0
	bne	.L184
	nop
	nop
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
	.size	freeList, .-freeList
	.ident	"GCC: (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0"
	.section	.note.GNU-stack,"",%progbits
