	.file	"594020.c"
	.intel_syntax noprefix
	.text
	.local	options
	.comm	options,40,32
	.data
	.type	nucleotide, @object
	.size	nucleotide, 5
nucleotide:
	.ascii	"ACGTN"
	.align 32
	.type	bg, @object
	.size	bg, 40
bg:
	.long	0
	.long	1072693248
	.long	0
	.long	1072693248
	.long	0
	.long	1072693248
	.long	0
	.long	1072693248
	.long	0
	.long	1070596096
	.globl	fasta_in
	.bss
	.align 8
	.type	fasta_in, @object
	.size	fasta_in, 8
fasta_in:
	.zero	8
	.globl	seqCnt
	.align 4
	.type	seqCnt, @object
	.size	seqCnt, 4
seqCnt:
	.zero	4
	.globl	lpm
	.align 8
	.type	lpm, @object
	.size	lpm, 8
lpm:
	.zero	8
	.globl	pwm
	.align 8
	.type	pwm, @object
	.size	pwm, 8
pwm:
	.zero	8
	.globl	matLen
	.data
	.align 4
	.type	matLen, @object
	.size	matLen, 4
matLen:
	.long	10
	.globl	pseudo_weight
	.bss
	.align 8
	.type	pseudo_weight, @object
	.size	pseudo_weight, 8
pseudo_weight:
	.zero	8
	.section	.rodata
.LC0:
	.string	"r"
	.align 8
.LC1:
	.string	"Could not open file %s: %s(%d)\n"
.LC2:
	.string	"Processing file %s\n"
.LC3:
	.string	"process_sga: malloc"
.LC4:
	.string	"process_file: realloc"
	.align 8
.LC5:
	.string	"Matrix value is too large \"%s\" \n"
	.align 8
.LC6:
	.string	"Matrix value for colum 1 (row %d) is missing, please check the matrix format (it should be LPM)\n"
	.align 8
.LC7:
	.string	"Matrix value for colum 2 (row %d) is missing, please check the matrix format (it should be LPM)\n"
	.align 8
.LC8:
	.string	"Matrix value for colum 3 (row %d) is missing, please check the matrix format (it should be LPM)\n"
	.align 8
.LC9:
	.string	"Matrix value for colum 4 (row %d) is missing, please check the matrix format (it should be LPM)\n"
.LC10:
	.string	"Out of memory\n"
	.align 8
.LC11:
	.string	"Matrix value for colum 1 (row %d) is missing, please check the matrix format (it should be Integer)\n"
	.align 8
.LC12:
	.string	"Matrix value for colum 2 (row %d) is missing, please check the matrix format (it should be Integer)\n"
	.align 8
.LC13:
	.string	"Matrix value for colum 3 (row %d) is missing, please check the matrix format (it should be Integer)\n"
	.align 8
.LC14:
	.string	"Matrix value for colum 4 (row %d) is missing, please check the matrix format (it should be Integer)\n"
	.text
	.type	read_profile, @function
read_profile:
.LFB6:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	rbx
	sub	rsp, 152
	.cfi_offset 3, -24
	mov	QWORD PTR -152[rbp], rdi
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -24[rbp], rax
	xor	eax, eax
	mov	rax, QWORD PTR -152[rbp]
	lea	rsi, .LC0[rip]
	mov	rdi, rax
	call	fopen@PLT
	mov	QWORD PTR -80[rbp], rax
	mov	DWORD PTR -140[rbp], 0
	mov	QWORD PTR -104[rbp], 1024
	mov	eax, DWORD PTR matLen[rip]
	mov	DWORD PTR -136[rbp], eax
	mov	QWORD PTR -64[rbp], 0
	mov	QWORD PTR -56[rbp], 0
	mov	QWORD PTR -48[rbp], 0
	mov	QWORD PTR -40[rbp], 0
	cmp	QWORD PTR -80[rbp], 0
	jne	.L2
	call	__errno_location@PLT
	mov	ebx, DWORD PTR [rax]
	call	__errno_location@PLT
	mov	eax, DWORD PTR [rax]
	mov	edi, eax
	call	strerror@PLT
	mov	rcx, rax
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -152[rbp]
	mov	r8d, ebx
	lea	rsi, .LC1[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L2:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L4
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -152[rbp]
	lea	rsi, .LC2[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
.L4:
	mov	rax, QWORD PTR -104[rbp]
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -120[rbp], rax
	cmp	QWORD PTR -120[rbp], 0
	jne	.L5
	lea	rdi, .LC3[rip]
	call	perror@PLT
	mov	eax, -1
	jmp	.L84
.L5:
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L46
	jmp	.L7
.L44:
	mov	rax, QWORD PTR -120[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -96[rbp], rax
	jmp	.L8
.L11:
	sal	QWORD PTR -104[rbp]
	mov	rdx, QWORD PTR -104[rbp]
	mov	rax, QWORD PTR -120[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -120[rbp], rax
	cmp	QWORD PTR -120[rbp], 0
	jne	.L9
	lea	rdi, .LC4[rip]
	call	perror@PLT
	mov	edi, 1
	call	exit@PLT
.L9:
	mov	rax, QWORD PTR -104[rbp]
	mov	edx, eax
	mov	rax, QWORD PTR -96[rbp]
	mov	ecx, eax
	mov	eax, edx
	sub	eax, ecx
	mov	esi, eax
	mov	rdx, QWORD PTR -120[rbp]
	mov	rax, QWORD PTR -96[rbp]
	lea	rcx, [rdx+rax]
	mov	rax, QWORD PTR -80[rbp]
	mov	rdx, rax
	mov	rdi, rcx
	call	fgets@PLT
	mov	QWORD PTR -72[rbp], rax
	mov	rax, QWORD PTR -120[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -96[rbp], rax
.L8:
	mov	rax, QWORD PTR -96[rbp]
	add	rax, 1
	cmp	QWORD PTR -104[rbp], rax
	jne	.L10
	mov	rax, QWORD PTR -96[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 10
	jne	.L11
.L10:
	mov	rax, QWORD PTR -96[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 10
	jne	.L12
	mov	rax, QWORD PTR -96[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
.L12:
	mov	rax, QWORD PTR -96[rbp]
	lea	rdx, -2[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 13
	jne	.L13
	mov	rax, QWORD PTR -96[rbp]
	lea	rdx, -2[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
.L13:
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -112[rbp], rax
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 35
	je	.L7
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 62
	jne	.L16
	jmp	.L7
.L17:
	add	QWORD PTR -112[rbp], 1
.L16:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L17
	mov	DWORD PTR -132[rbp], 0
	jmp	.L18
.L20:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L19
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L19:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L18:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L20
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L20
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 46
	je	.L20
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 101
	je	.L20
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L21
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC6[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L21:
	mov	rax, QWORD PTR lpm[rip]
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 3
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR [rbx], rax
	jmp	.L22
.L23:
	add	QWORD PTR -112[rbp], 1
.L22:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L23
	mov	DWORD PTR -132[rbp], 0
	jmp	.L24
.L26:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L25
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L25:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L24:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L26
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L26
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 46
	je	.L26
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 101
	je	.L26
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L27
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC7[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L27:
	mov	rax, QWORD PTR lpm[rip]
	add	rax, 8
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 3
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR [rbx], rax
	jmp	.L28
.L29:
	add	QWORD PTR -112[rbp], 1
.L28:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L29
	mov	DWORD PTR -132[rbp], 0
	jmp	.L30
.L32:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L31
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L31:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L30:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L32
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L32
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 46
	je	.L32
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 101
	je	.L32
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L33
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC8[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L33:
	mov	rax, QWORD PTR lpm[rip]
	add	rax, 16
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 3
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR [rbx], rax
	jmp	.L34
.L35:
	add	QWORD PTR -112[rbp], 1
.L34:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L35
	mov	DWORD PTR -132[rbp], 0
	jmp	.L36
.L38:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L37
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L37:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L36:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L38
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L38
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 46
	je	.L38
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 101
	je	.L38
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L39
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC9[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L39:
	mov	rax, QWORD PTR lpm[rip]
	add	rax, 24
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 3
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR [rbx], rax
	mov	eax, DWORD PTR -136[rbp]
	sub	eax, 1
	cmp	DWORD PTR -140[rbp], eax
	jne	.L40
	mov	DWORD PTR -128[rbp], 0
	jmp	.L41
.L43:
	mov	eax, DWORD PTR -136[rbp]
	add	eax, eax
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rcx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -128[rbp]
	cdqe
	sal	rax, 3
	add	rax, rcx
	mov	rax, QWORD PTR [rax]
	mov	rsi, QWORD PTR lpm[rip]
	mov	ecx, DWORD PTR -128[rbp]
	movsx	rcx, ecx
	sal	rcx, 3
	lea	rbx, [rsi+rcx]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR [rbx], rax
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -128[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	test	rax, rax
	jne	.L42
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 14
	mov	esi, 1
	lea	rdi, .LC10[rip]
	call	fwrite@PLT
	mov	eax, 1
	jmp	.L84
.L42:
	add	DWORD PTR -128[rbp], 1
.L41:
	cmp	DWORD PTR -128[rbp], 4
	jle	.L43
	sal	DWORD PTR -136[rbp]
.L40:
	add	DWORD PTR -140[rbp], 1
.L7:
	mov	rax, QWORD PTR -104[rbp]
	mov	ecx, eax
	mov	rdx, QWORD PTR -80[rbp]
	mov	rax, QWORD PTR -120[rbp]
	mov	esi, ecx
	mov	rdi, rax
	call	fgets@PLT
	mov	QWORD PTR -72[rbp], rax
	cmp	QWORD PTR -72[rbp], 0
	jne	.L44
	jmp	.L45
.L83:
	mov	rax, QWORD PTR -120[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -88[rbp], rax
	jmp	.L47
.L50:
	sal	QWORD PTR -104[rbp]
	mov	rdx, QWORD PTR -104[rbp]
	mov	rax, QWORD PTR -120[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -120[rbp], rax
	cmp	QWORD PTR -120[rbp], 0
	jne	.L48
	lea	rdi, .LC4[rip]
	call	perror@PLT
	mov	edi, 1
	call	exit@PLT
.L48:
	mov	rax, QWORD PTR -104[rbp]
	mov	edx, eax
	mov	rax, QWORD PTR -88[rbp]
	mov	ecx, eax
	mov	eax, edx
	sub	eax, ecx
	mov	esi, eax
	mov	rdx, QWORD PTR -120[rbp]
	mov	rax, QWORD PTR -88[rbp]
	lea	rcx, [rdx+rax]
	mov	rax, QWORD PTR -80[rbp]
	mov	rdx, rax
	mov	rdi, rcx
	call	fgets@PLT
	mov	QWORD PTR -72[rbp], rax
	mov	rax, QWORD PTR -120[rbp]
	mov	rdi, rax
	call	strlen@PLT
	mov	QWORD PTR -88[rbp], rax
.L47:
	mov	rax, QWORD PTR -88[rbp]
	add	rax, 1
	cmp	QWORD PTR -104[rbp], rax
	jne	.L49
	mov	rax, QWORD PTR -88[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 10
	jne	.L50
.L49:
	mov	rax, QWORD PTR -88[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 10
	jne	.L51
	mov	rax, QWORD PTR -88[rbp]
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
.L51:
	mov	rax, QWORD PTR -88[rbp]
	lea	rdx, -2[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	movzx	eax, BYTE PTR [rax]
	cmp	al, 13
	jne	.L52
	mov	rax, QWORD PTR -88[rbp]
	lea	rdx, -2[rax]
	mov	rax, QWORD PTR -120[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
.L52:
	mov	rax, QWORD PTR -120[rbp]
	mov	QWORD PTR -112[rbp], rax
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 35
	je	.L46
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 62
	jne	.L55
	jmp	.L46
.L56:
	add	QWORD PTR -112[rbp], 1
.L55:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L56
	mov	DWORD PTR -132[rbp], 0
	jmp	.L57
.L59:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L58
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L58:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L57:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L59
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L59
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L60
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC11[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L60:
	mov	rax, QWORD PTR pwm[rip]
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 2
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR [rbx], eax
	jmp	.L61
.L62:
	add	QWORD PTR -112[rbp], 1
.L61:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L62
	mov	DWORD PTR -132[rbp], 0
	jmp	.L63
.L65:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L64
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L64:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L63:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L65
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L65
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L66
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC12[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L66:
	mov	rax, QWORD PTR pwm[rip]
	add	rax, 8
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 2
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR [rbx], eax
	jmp	.L67
.L68:
	add	QWORD PTR -112[rbp], 1
.L67:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L68
	mov	DWORD PTR -132[rbp], 0
	jmp	.L69
.L71:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L70
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L70:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L69:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L71
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L71
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L72
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC13[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L72:
	mov	rax, QWORD PTR pwm[rip]
	add	rax, 16
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 2
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR [rbx], eax
	jmp	.L73
.L74:
	add	QWORD PTR -112[rbp], 1
.L73:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	jne	.L74
	mov	DWORD PTR -132[rbp], 0
	jmp	.L75
.L77:
	cmp	DWORD PTR -132[rbp], 31
	jle	.L76
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -112[rbp]
	lea	rsi, .LC5[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L76:
	mov	rax, QWORD PTR -112[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -112[rbp], rdx
	mov	edx, DWORD PTR -132[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -132[rbp], ecx
	movzx	ecx, BYTE PTR [rax]
	movsx	rax, edx
	mov	BYTE PTR -64[rbp+rax], cl
.L75:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 2048
	test	eax, eax
	jne	.L77
	mov	rax, QWORD PTR -112[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	al, 45
	je	.L77
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	mov	BYTE PTR -64[rbp+rax], 0
	lea	rax, -64[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L78
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -140[rbp]
	lea	rsi, .LC14[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L84
.L78:
	mov	rax, QWORD PTR pwm[rip]
	add	rax, 24
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 2
	lea	rbx, [rdx+rax]
	lea	rax, -64[rbp]
	mov	rdi, rax
	call	atoi@PLT
	mov	DWORD PTR [rbx], eax
	mov	eax, DWORD PTR -136[rbp]
	sub	eax, 1
	cmp	DWORD PTR -140[rbp], eax
	jne	.L79
	mov	DWORD PTR -124[rbp], 0
	jmp	.L80
.L82:
	mov	eax, DWORD PTR -136[rbp]
	add	eax, eax
	cdqe
	lea	rdx, 0[0+rax*4]
	mov	rcx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -124[rbp]
	cdqe
	sal	rax, 3
	add	rax, rcx
	mov	rax, QWORD PTR [rax]
	mov	rsi, QWORD PTR pwm[rip]
	mov	ecx, DWORD PTR -124[rbp]
	movsx	rcx, ecx
	sal	rcx, 3
	lea	rbx, [rsi+rcx]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR [rbx], rax
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -124[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	test	rax, rax
	jne	.L81
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 14
	mov	esi, 1
	lea	rdi, .LC10[rip]
	call	fwrite@PLT
	mov	eax, 1
	jmp	.L84
.L81:
	add	DWORD PTR -124[rbp], 1
.L80:
	cmp	DWORD PTR -124[rbp], 4
	jle	.L82
	sal	DWORD PTR -136[rbp]
.L79:
	add	DWORD PTR -140[rbp], 1
.L46:
	mov	rax, QWORD PTR -104[rbp]
	mov	ecx, eax
	mov	rdx, QWORD PTR -80[rbp]
	mov	rax, QWORD PTR -120[rbp]
	mov	esi, ecx
	mov	rdi, rax
	call	fgets@PLT
	mov	QWORD PTR -72[rbp], rax
	cmp	QWORD PTR -72[rbp], 0
	jne	.L83
.L45:
	mov	rax, QWORD PTR -80[rbp]
	mov	rdi, rax
	call	fclose@PLT
	mov	eax, DWORD PTR -140[rbp]
.L84:
	mov	rbx, QWORD PTR -24[rbp]
	sub	rbx, QWORD PTR fs:40
	je	.L85
	call	__stack_chk_fail@PLT
.L85:
	mov	rbx, QWORD PTR -8[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE6:
	.size	read_profile, .-read_profile
	.section	.rodata
.LC15:
	.string	">SEQ:  "
.LC16:
	.string	"%d"
	.align 8
.LC17:
	.string	"nucl_cnt[%d] = %d ; seq LEN = %d\n"
	.align 8
.LC20:
	.string	"Background nucleotide frequencies: "
.LC21:
	.string	"bg[%i] = %f "
.LC22:
	.string	"\n\n"
.LC25:
	.string	",%d"
.LC26:
	.string	"%s\t%e\t%d\t%s\t%c\n"
.LC27:
	.string	"%g\t%d\t%s\t%c\n"
.LC28:
	.string	"%s\t%g\t%d\t%s\t%c\n"
.LC29:
	.string	"%s\t%e\n"
.LC30:
	.string	"%g\n"
.LC31:
	.string	"%s\t%g\n"
	.text
	.type	process_seq_lpm, @function
process_seq_lpm:
.LFB7:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 432
	mov	QWORD PTR -424[rbp], rdi
	mov	QWORD PTR -432[rbp], rsi
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -8[rbp], rax
	xor	eax, eax
	mov	DWORD PTR -320[rbp], 0
	mov	DWORD PTR -316[rbp], 0
	mov	DWORD PTR -312[rbp], 0
	mov	DWORD PTR -308[rbp], 0
	mov	DWORD PTR -304[rbp], 0
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L87
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 7
	mov	esi, 1
	lea	rdi, .LC15[rip]
	call	fwrite@PLT
	mov	DWORD PTR -400[rbp], 0
	jmp	.L88
.L89:
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	edx, DWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC16[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	DWORD PTR -400[rbp], 1
.L88:
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -400[rbp], eax
	jl	.L89
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
.L87:
	mov	eax, DWORD PTR options[rip+20]
	test	eax, eax
	je	.L90
	mov	DWORD PTR -400[rbp], 0
	jmp	.L91
.L92:
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	movsx	rdx, eax
	mov	edx, DWORD PTR -320[rbp+rdx*4]
	add	edx, 1
	cdqe
	mov	DWORD PTR -320[rbp+rax*4], edx
	add	DWORD PTR -400[rbp], 1
.L91:
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -400[rbp], eax
	jl	.L92
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	je	.L93
	mov	DWORD PTR -400[rbp], 0
	jmp	.L94
.L96:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L95
	mov	rax, QWORD PTR -424[rbp]
	mov	esi, DWORD PTR 16[rax]
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	mov	ecx, DWORD PTR -320[rbp+rax*4]
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -400[rbp]
	mov	r8d, esi
	lea	rsi, .LC17[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
.L95:
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	mov	eax, DWORD PTR -320[rbp+rax*4]
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, eax
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	divsd	xmm0, xmm1
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	QWORD PTR [rdx+rax], xmm0
	add	DWORD PTR -400[rbp], 1
.L94:
	cmp	DWORD PTR -400[rbp], 3
	jle	.L96
	jmp	.L97
.L93:
	mov	edx, DWORD PTR -320[rbp]
	mov	eax, DWORD PTR -308[rbp]
	add	eax, edx
	mov	edx, eax
	shr	edx, 31
	add	eax, edx
	sar	eax
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	mov	eax, DWORD PTR -304[rbp]
	pxor	xmm0, xmm0
	cvtsi2sd	xmm0, eax
	movsd	xmm2, QWORD PTR .LC18[rip]
	divsd	xmm0, xmm2
	addsd	xmm0, xmm1
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	pxor	xmm1, xmm1
	cvtsi2sd	xmm1, eax
	divsd	xmm0, xmm1
	movsd	QWORD PTR -328[rbp], xmm0
	movsd	xmm0, QWORD PTR -328[rbp]
	movsd	QWORD PTR bg[rip], xmm0
	movsd	xmm0, QWORD PTR .LC19[rip]
	subsd	xmm0, QWORD PTR -328[rbp]
	movsd	QWORD PTR bg[rip+8], xmm0
	movsd	xmm0, QWORD PTR .LC19[rip]
	subsd	xmm0, QWORD PTR -328[rbp]
	movsd	QWORD PTR bg[rip+16], xmm0
	movsd	xmm0, QWORD PTR -328[rbp]
	movsd	QWORD PTR bg[rip+24], xmm0
.L97:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L90
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 35
	mov	esi, 1
	lea	rdi, .LC20[rip]
	call	fwrite@PLT
	mov	DWORD PTR -400[rbp], 0
	jmp	.L98
.L99:
	mov	eax, DWORD PTR -400[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	mov	rcx, QWORD PTR [rdx+rax]
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -400[rbp]
	movq	xmm0, rcx
	lea	rsi, .LC21[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	add	DWORD PTR -400[rbp], 1
.L98:
	cmp	DWORD PTR -400[rbp], 4
	jle	.L99
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 2
	mov	esi, 1
	lea	rdi, .LC22[rip]
	call	fwrite@PLT
.L90:
	mov	eax, DWORD PTR options[rip+32]
	test	eax, eax
	je	.L100
	pxor	xmm0, xmm0
	movsd	QWORD PTR -384[rbp], xmm0
	mov	QWORD PTR -272[rbp], 48
	mov	QWORD PTR -264[rbp], 0
	mov	QWORD PTR -256[rbp], 0
	mov	QWORD PTR -248[rbp], 0
	mov	QWORD PTR -240[rbp], 0
	mov	QWORD PTR -232[rbp], 0
	mov	QWORD PTR -224[rbp], 0
	mov	QWORD PTR -216[rbp], 0
	mov	QWORD PTR -208[rbp], 0
	mov	QWORD PTR -200[rbp], 0
	mov	QWORD PTR -192[rbp], 0
	mov	QWORD PTR -184[rbp], 0
	mov	QWORD PTR -176[rbp], 0
	mov	QWORD PTR -168[rbp], 0
	mov	QWORD PTR -160[rbp], 0
	mov	QWORD PTR -152[rbp], 0
	mov	QWORD PTR -144[rbp], 0
	mov	QWORD PTR -136[rbp], 0
	mov	QWORD PTR -128[rbp], 0
	mov	QWORD PTR -120[rbp], 0
	mov	QWORD PTR -112[rbp], 0
	mov	QWORD PTR -104[rbp], 0
	mov	QWORD PTR -96[rbp], 0
	mov	QWORD PTR -88[rbp], 0
	mov	QWORD PTR -80[rbp], 0
	mov	QWORD PTR -72[rbp], 0
	mov	QWORD PTR -64[rbp], 0
	mov	QWORD PTR -56[rbp], 0
	mov	QWORD PTR -48[rbp], 0
	mov	QWORD PTR -40[rbp], 0
	mov	QWORD PTR -32[rbp], 0
	mov	QWORD PTR -24[rbp], 0
	mov	BYTE PTR -401[rbp], 43
	mov	DWORD PTR -400[rbp], 0
	jmp	.L101
.L121:
	movsd	xmm0, QWORD PTR .LC24[rip]
	movsd	QWORD PTR -376[rbp], xmm0
	movsd	xmm0, QWORD PTR .LC24[rip]
	movsd	QWORD PTR -368[rbp], xmm0
	mov	DWORD PTR -396[rbp], 0
	jmp	.L102
.L106:
	mov	rdx, QWORD PTR lpm[rip]
	mov	rax, QWORD PTR -424[rbp]
	mov	rcx, QWORD PTR 8[rax]
	mov	esi, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, esi
	cdqe
	sal	rax, 2
	add	rax, rcx
	mov	eax, DWORD PTR [rax]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -396[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	mulsd	xmm0, QWORD PTR -376[rbp]
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	xmm1, QWORD PTR [rdx+rax]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -376[rbp], xmm0
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	jne	.L103
	mov	DWORD PTR -392[rbp], 0
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	cmp	eax, 4
	jne	.L104
	mov	DWORD PTR -392[rbp], 4
	jmp	.L105
.L104:
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	edx, DWORD PTR [rax]
	mov	eax, 3
	sub	eax, edx
	mov	DWORD PTR -392[rbp], eax
.L105:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -392[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR matLen[rip]
	sub	eax, DWORD PTR -396[rbp]
	cdqe
	sal	rax, 3
	sub	rax, 8
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	mulsd	xmm0, QWORD PTR -368[rbp]
	mov	eax, DWORD PTR -392[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	xmm1, QWORD PTR [rdx+rax]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -368[rbp], xmm0
.L103:
	add	DWORD PTR -396[rbp], 1
.L102:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -396[rbp], eax
	jl	.L106
	pxor	xmm0, xmm0
	movsd	QWORD PTR -360[rbp], xmm0
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	je	.L107
	movsd	xmm0, QWORD PTR -376[rbp]
	movsd	QWORD PTR -360[rbp], xmm0
	jmp	.L108
.L107:
	movsd	xmm0, QWORD PTR -376[rbp]
	comisd	xmm0, QWORD PTR -368[rbp]
	jbe	.L144
	movsd	xmm0, QWORD PTR -376[rbp]
	jmp	.L111
.L144:
	movsd	xmm0, QWORD PTR -368[rbp]
.L111:
	movsd	QWORD PTR -360[rbp], xmm0
.L108:
	movsd	xmm0, QWORD PTR -360[rbp]
	comisd	xmm0, QWORD PTR -384[rbp]
	jbe	.L145
	movsd	xmm0, QWORD PTR -360[rbp]
	movsd	QWORD PTR -384[rbp], xmm0
	mov	edx, DWORD PTR -400[rbp]
	lea	rax, -272[rbp]
	lea	rsi, .LC16[rip]
	mov	rdi, rax
	mov	eax, 0
	call	sprintf@PLT
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	jne	.L114
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -376[rbp]
	jp	.L115
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -376[rbp]
	jne	.L115
	mov	BYTE PTR -401[rbp], 43
	jmp	.L114
.L115:
	mov	BYTE PTR -401[rbp], 45
	mov	edx, DWORD PTR matLen[rip]
	mov	eax, DWORD PTR -400[rbp]
	add	edx, eax
	lea	rax, -272[rbp]
	lea	rsi, .LC16[rip]
	mov	rdi, rax
	mov	eax, 0
	call	sprintf@PLT
	jmp	.L114
.L145:
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -384[rbp]
	jp	.L114
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -384[rbp]
	jne	.L114
	pxor	xmm0, xmm0
	ucomisd	xmm0, QWORD PTR -360[rbp]
	jp	.L142
	pxor	xmm0, xmm0
	comisd	xmm0, QWORD PTR -360[rbp]
	je	.L114
.L142:
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -376[rbp]
	jp	.L119
	movsd	xmm0, QWORD PTR -360[rbp]
	ucomisd	xmm0, QWORD PTR -376[rbp]
	jne	.L119
	mov	edx, DWORD PTR -400[rbp]
	lea	rax, -288[rbp]
	lea	rsi, .LC25[rip]
	mov	rdi, rax
	mov	eax, 0
	call	sprintf@PLT
	lea	rdx, -288[rbp]
	lea	rax, -272[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcat@PLT
	jmp	.L114
.L119:
	mov	edx, DWORD PTR matLen[rip]
	mov	eax, DWORD PTR -400[rbp]
	add	edx, eax
	lea	rax, -288[rbp]
	lea	rsi, .LC25[rip]
	mov	rdi, rax
	mov	eax, 0
	call	sprintf@PLT
	lea	rdx, -288[rbp]
	lea	rax, -272[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcat@PLT
.L114:
	add	DWORD PTR -400[rbp], 1
.L101:
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	mov	edx, DWORD PTR matLen[rip]
	sub	eax, edx
	cmp	DWORD PTR -400[rbp], eax
	jle	.L121
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L122
	movsx	r8d, BYTE PTR -401[rbp]
	mov	rax, QWORD PTR -424[rbp]
	mov	ecx, DWORD PTR 16[rax]
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rdi, -272[rbp]
	mov	rsi, QWORD PTR -384[rbp]
	mov	r9d, r8d
	mov	r8, rdi
	movq	xmm0, rsi
	lea	rsi, .LC26[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
.L122:
	mov	eax, DWORD PTR options[rip+28]
	test	eax, eax
	je	.L123
	movsx	edi, BYTE PTR -401[rbp]
	mov	rax, QWORD PTR -424[rbp]
	mov	edx, DWORD PTR 16[rax]
	lea	rcx, -272[rbp]
	mov	rsi, QWORD PTR -384[rbp]
	mov	rax, QWORD PTR -432[rbp]
	mov	r8d, edi
	movq	xmm0, rsi
	lea	rsi, .LC27[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	jmp	.L146
.L123:
	movsx	r8d, BYTE PTR -401[rbp]
	mov	rax, QWORD PTR -424[rbp]
	mov	ecx, DWORD PTR 16[rax]
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR [rax]
	lea	rdi, -272[rbp]
	mov	rsi, QWORD PTR -384[rbp]
	mov	rax, QWORD PTR -432[rbp]
	mov	r9d, r8d
	mov	r8, rdi
	movq	xmm0, rsi
	lea	rsi, .LC28[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	jmp	.L146
.L100:
	pxor	xmm0, xmm0
	movsd	QWORD PTR -352[rbp], xmm0
	mov	DWORD PTR -400[rbp], 0
	jmp	.L126
.L134:
	movsd	xmm0, QWORD PTR .LC24[rip]
	movsd	QWORD PTR -344[rbp], xmm0
	movsd	xmm0, QWORD PTR .LC24[rip]
	movsd	QWORD PTR -336[rbp], xmm0
	mov	DWORD PTR -396[rbp], 0
	jmp	.L127
.L131:
	mov	rdx, QWORD PTR lpm[rip]
	mov	rax, QWORD PTR -424[rbp]
	mov	rcx, QWORD PTR 8[rax]
	mov	esi, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, esi
	cdqe
	sal	rax, 2
	add	rax, rcx
	mov	eax, DWORD PTR [rax]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -396[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	mulsd	xmm0, QWORD PTR -344[rbp]
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	xmm1, QWORD PTR [rdx+rax]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -344[rbp], xmm0
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	jne	.L128
	mov	DWORD PTR -388[rbp], 0
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	cmp	eax, 4
	jne	.L129
	mov	DWORD PTR -388[rbp], 4
	jmp	.L130
.L129:
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -400[rbp]
	mov	eax, DWORD PTR -396[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	edx, DWORD PTR [rax]
	mov	eax, 3
	sub	eax, edx
	mov	DWORD PTR -388[rbp], eax
.L130:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -388[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR matLen[rip]
	sub	eax, DWORD PTR -396[rbp]
	cdqe
	sal	rax, 3
	sub	rax, 8
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	mulsd	xmm0, QWORD PTR -336[rbp]
	mov	eax, DWORD PTR -388[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	xmm1, QWORD PTR [rdx+rax]
	divsd	xmm0, xmm1
	movsd	QWORD PTR -336[rbp], xmm0
.L128:
	add	DWORD PTR -396[rbp], 1
.L127:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -396[rbp], eax
	jl	.L131
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	je	.L132
	movsd	xmm0, QWORD PTR -352[rbp]
	addsd	xmm0, QWORD PTR -344[rbp]
	movsd	QWORD PTR -352[rbp], xmm0
	jmp	.L133
.L132:
	movsd	xmm0, QWORD PTR -352[rbp]
	addsd	xmm0, QWORD PTR -344[rbp]
	movsd	xmm1, QWORD PTR -336[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -352[rbp], xmm0
.L133:
	add	DWORD PTR -400[rbp], 1
.L126:
	mov	rax, QWORD PTR -424[rbp]
	mov	eax, DWORD PTR 16[rax]
	mov	edx, DWORD PTR matLen[rip]
	sub	eax, edx
	cmp	DWORD PTR -400[rbp], eax
	jle	.L134
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L135
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, QWORD PTR -352[rbp]
	movq	xmm0, rcx
	lea	rsi, .LC29[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
.L135:
	mov	eax, DWORD PTR options[rip+28]
	test	eax, eax
	je	.L136
	mov	rdx, QWORD PTR -352[rbp]
	mov	rax, QWORD PTR -432[rbp]
	movq	xmm0, rdx
	lea	rsi, .LC30[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	jmp	.L146
.L136:
	mov	rax, QWORD PTR -424[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rcx, QWORD PTR -352[rbp]
	mov	rax, QWORD PTR -432[rbp]
	movq	xmm0, rcx
	lea	rsi, .LC31[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
.L146:
	nop
	mov	rax, QWORD PTR -8[rbp]
	sub	rax, QWORD PTR fs:40
	je	.L137
	call	__stack_chk_fail@PLT
.L137:
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE7:
	.size	process_seq_lpm, .-process_seq_lpm
	.section	.rodata
.LC32:
	.string	"> "
.LC33:
	.string	"NOTAG"
.LC34:
	.string	"%d\t%d\t%s\t%d\t%c\n"
.LC35:
	.string	"%s\t%d\t%d\t%s\t%d\t%c\n"
	.text
	.type	process_seq_pwm, @function
process_seq_pwm:
.LFB8:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	sub	rsp, 96
	mov	QWORD PTR -88[rbp], rdi
	mov	QWORD PTR -96[rbp], rsi
	mov	QWORD PTR -24[rbp], 0
	mov	QWORD PTR -16[rbp], 0
	mov	QWORD PTR -8[rbp], 0
	mov	DWORD PTR -64[rbp], 0
	mov	DWORD PTR -60[rbp], 0
	mov	DWORD PTR -56[rbp], -2147483648
	mov	DWORD PTR -52[rbp], 0
	mov	DWORD PTR -48[rbp], 0
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L148
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 2
	mov	esi, 1
	lea	rdi, .LC32[rip]
	call	fwrite@PLT
	mov	DWORD PTR -72[rbp], 0
	jmp	.L149
.L150:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	eax, DWORD PTR -72[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	edx, DWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC16[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	DWORD PTR -72[rbp], 1
.L149:
	mov	rax, QWORD PTR -88[rbp]
	mov	eax, DWORD PTR 16[rax]
	cmp	DWORD PTR -72[rbp], eax
	jl	.L150
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
.L148:
	mov	rax, QWORD PTR -88[rbp]
	mov	edx, DWORD PTR 16[rax]
	mov	eax, DWORD PTR matLen[rip]
	cmp	edx, eax
	jge	.L151
	mov	eax, DWORD PTR options[rip+28]
	test	eax, eax
	je	.L152
	mov	rax, QWORD PTR -96[rbp]
	sub	rsp, 8
	push	48
	mov	r9d, -2147483648
	lea	r8, .LC33[rip]
	mov	ecx, 0
	mov	edx, 0
	lea	rsi, .LC34[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	rsp, 16
	jmp	.L147
.L152:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -96[rbp]
	push	48
	push	-2147483648
	lea	r9, .LC33[rip]
	mov	r8d, 0
	mov	ecx, 0
	lea	rsi, .LC35[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	rsp, 16
	jmp	.L147
.L151:
	mov	eax, DWORD PTR matLen[rip]
	add	eax, 1
	cdqe
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -24[rbp], rax
	mov	eax, DWORD PTR matLen[rip]
	add	eax, 1
	cdqe
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -16[rbp], rax
	mov	eax, DWORD PTR matLen[rip]
	add	eax, 1
	cdqe
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -8[rbp], rax
	mov	DWORD PTR -44[rbp], 0
	mov	DWORD PTR -72[rbp], 0
	jmp	.L155
.L165:
	mov	DWORD PTR -64[rbp], 0
	mov	DWORD PTR -60[rbp], 0
	mov	DWORD PTR -68[rbp], 0
	jmp	.L156
.L160:
	mov	rdx, QWORD PTR pwm[rip]
	mov	rax, QWORD PTR -88[rbp]
	mov	rcx, QWORD PTR 8[rax]
	mov	esi, DWORD PTR -72[rbp]
	mov	eax, DWORD PTR -68[rbp]
	add	eax, esi
	cdqe
	sal	rax, 2
	add	rax, rcx
	mov	eax, DWORD PTR [rax]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -68[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	add	DWORD PTR -64[rbp], eax
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -72[rbp]
	mov	eax, DWORD PTR -68[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	mov	edx, DWORD PTR -68[rbp]
	movsx	rcx, edx
	mov	rdx, QWORD PTR -16[rbp]
	add	rdx, rcx
	cdqe
	lea	rcx, nucleotide[rip]
	movzx	eax, BYTE PTR [rax+rcx]
	mov	BYTE PTR [rdx], al
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	jne	.L157
	mov	DWORD PTR -44[rbp], 0
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -72[rbp]
	mov	eax, DWORD PTR -68[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	cmp	eax, 4
	jne	.L158
	mov	DWORD PTR -44[rbp], 4
	jmp	.L159
.L158:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR 8[rax]
	mov	ecx, DWORD PTR -72[rbp]
	mov	eax, DWORD PTR -68[rbp]
	add	eax, ecx
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	edx, DWORD PTR [rax]
	mov	eax, 3
	sub	eax, edx
	mov	DWORD PTR -44[rbp], eax
.L159:
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -44[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR matLen[rip]
	sub	eax, DWORD PTR -68[rbp]
	cdqe
	sal	rax, 2
	sub	rax, 4
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	add	DWORD PTR -60[rbp], eax
	mov	eax, DWORD PTR matLen[rip]
	sub	eax, DWORD PTR -68[rbp]
	cdqe
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -8[rbp]
	add	rdx, rax
	mov	eax, DWORD PTR -44[rbp]
	cdqe
	lea	rcx, nucleotide[rip]
	movzx	eax, BYTE PTR [rax+rcx]
	mov	BYTE PTR [rdx], al
.L157:
	add	DWORD PTR -68[rbp], 1
.L156:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -68[rbp], eax
	jl	.L160
	mov	eax, DWORD PTR -68[rbp]
	movsx	rdx, eax
	mov	rax, QWORD PTR -16[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
	mov	eax, DWORD PTR -68[rbp]
	movsx	rdx, eax
	mov	rax, QWORD PTR -8[rbp]
	add	rax, rdx
	mov	BYTE PTR [rax], 0
	mov	DWORD PTR -40[rbp], 0
	mov	DWORD PTR -36[rbp], 0
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	je	.L161
	mov	eax, DWORD PTR -64[rbp]
	mov	DWORD PTR -40[rbp], eax
	jmp	.L162
.L161:
	mov	eax, DWORD PTR -64[rbp]
	sub	eax, DWORD PTR -60[rbp]
	mov	DWORD PTR -28[rbp], eax
	mov	eax, DWORD PTR -28[rbp]
	shr	eax, 31
	mov	DWORD PTR -36[rbp], eax
	mov	eax, DWORD PTR -36[rbp]
	imul	eax, DWORD PTR -28[rbp]
	mov	edx, eax
	mov	eax, DWORD PTR -64[rbp]
	sub	eax, edx
	mov	DWORD PTR -40[rbp], eax
.L162:
	mov	eax, DWORD PTR -40[rbp]
	cmp	eax, DWORD PTR -56[rbp]
	jle	.L163
	mov	eax, DWORD PTR -40[rbp]
	mov	DWORD PTR -56[rbp], eax
	mov	eax, DWORD PTR -72[rbp]
	mov	DWORD PTR -52[rbp], eax
	mov	eax, DWORD PTR -36[rbp]
	mov	DWORD PTR -48[rbp], eax
	cmp	DWORD PTR -36[rbp], 0
	je	.L164
	mov	rdx, QWORD PTR -8[rbp]
	mov	rax, QWORD PTR -24[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
	jmp	.L163
.L164:
	mov	rdx, QWORD PTR -16[rbp]
	mov	rax, QWORD PTR -24[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strcpy@PLT
.L163:
	add	DWORD PTR -72[rbp], 1
.L155:
	mov	rax, QWORD PTR -88[rbp]
	mov	eax, DWORD PTR 16[rax]
	mov	edx, DWORD PTR matLen[rip]
	sub	eax, edx
	cmp	DWORD PTR -72[rbp], eax
	jle	.L165
	cmp	DWORD PTR -48[rbp], 0
	je	.L166
	mov	BYTE PTR -73[rbp], 45
	jmp	.L167
.L166:
	mov	BYTE PTR -73[rbp], 43
.L167:
	mov	edx, DWORD PTR matLen[rip]
	mov	eax, DWORD PTR -52[rbp]
	add	eax, edx
	mov	DWORD PTR -32[rbp], eax
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L168
	movsx	esi, BYTE PTR -73[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	mov	r8, QWORD PTR -24[rbp]
	mov	edi, DWORD PTR -32[rbp]
	mov	ecx, DWORD PTR -52[rbp]
	push	rsi
	mov	esi, DWORD PTR -56[rbp]
	push	rsi
	mov	r9, r8
	mov	r8d, edi
	lea	rsi, .LC35[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	rsp, 16
.L168:
	mov	eax, DWORD PTR options[rip+28]
	test	eax, eax
	je	.L169
	movsx	esi, BYTE PTR -73[rbp]
	mov	r8d, DWORD PTR -56[rbp]
	mov	rdi, QWORD PTR -24[rbp]
	mov	ecx, DWORD PTR -32[rbp]
	mov	edx, DWORD PTR -52[rbp]
	mov	rax, QWORD PTR -96[rbp]
	sub	rsp, 8
	push	rsi
	mov	r9d, r8d
	mov	r8, rdi
	lea	rsi, .LC34[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	rsp, 16
	jmp	.L170
.L169:
	movsx	esi, BYTE PTR -73[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	r8, QWORD PTR -24[rbp]
	mov	edi, DWORD PTR -32[rbp]
	mov	ecx, DWORD PTR -52[rbp]
	mov	rax, QWORD PTR -96[rbp]
	push	rsi
	mov	esi, DWORD PTR -56[rbp]
	push	rsi
	mov	r9, r8
	mov	r8d, edi
	lea	rsi, .LC35[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	rsp, 16
.L170:
	mov	rax, QWORD PTR -24[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -16[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -8[rbp]
	mov	rdi, rax
	call	free@PLT
.L147:
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE8:
	.size	process_seq_pwm, .-process_seq_pwm
	.section	.rodata
	.align 8
.LC36:
	.string	"Could not find a sequence in file %s\n"
	.align 8
.LC37:
	.string	"Fasta Header too long \"%s\" in file %s\n"
	.text
	.type	process_file, @function
process_file:
.LFB9:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	rbx
	sub	rsp, 3208
	.cfi_offset 3, -24
	mov	QWORD PTR -3192[rbp], rdi
	mov	QWORD PTR -3200[rbp], rsi
	mov	QWORD PTR -3208[rbp], rdx
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -24[rbp], rax
	xor	eax, eax
	cmp	QWORD PTR -3192[rbp], 0
	jne	.L172
	mov	rax, QWORD PTR -3200[rbp]
	lea	rsi, .LC0[rip]
	mov	rdi, rax
	call	fopen@PLT
	mov	QWORD PTR -3144[rbp], rax
	cmp	QWORD PTR -3144[rbp], 0
	jne	.L173
	call	__errno_location@PLT
	mov	ebx, DWORD PTR [rax]
	call	__errno_location@PLT
	mov	eax, DWORD PTR [rax]
	mov	edi, eax
	call	strerror@PLT
	mov	rcx, rax
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -3200[rbp]
	mov	r8d, ebx
	lea	rsi, .LC1[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, -1
	jmp	.L204
.L173:
	mov	rax, QWORD PTR -3144[rbp]
	mov	QWORD PTR -3192[rbp], rax
.L172:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L206
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -3200[rbp]
	lea	rsi, .LC2[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
.L206:
	nop
.L177:
	mov	rdx, QWORD PTR -3192[rbp]
	lea	rax, -3104[rbp]
	mov	esi, 3072
	mov	rdi, rax
	call	fgets@PLT
	mov	QWORD PTR -3160[rbp], rax
	cmp	QWORD PTR -3160[rbp], 0
	je	.L176
	movzx	eax, BYTE PTR -3104[rbp]
	cmp	al, 62
	jne	.L177
.L176:
	cmp	QWORD PTR -3160[rbp], 0
	je	.L178
	movzx	eax, BYTE PTR -3104[rbp]
	cmp	al, 62
	je	.L179
.L178:
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -3200[rbp]
	lea	rsi, .LC36[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR stdin[rip]
	cmp	QWORD PTR -3192[rbp], rax
	je	.L180
	mov	rax, QWORD PTR -3192[rbp]
	mov	rdi, rax
	call	fclose@PLT
.L180:
	mov	eax, -1
	jmp	.L204
.L179:
	mov	edi, 132
	call	malloc@PLT
	mov	QWORD PTR -3136[rbp], rax
	mov	edi, 12288
	call	malloc@PLT
	mov	QWORD PTR -3128[rbp], rax
	mov	DWORD PTR -3172[rbp], 3072
	jmp	.L181
.L202:
	lea	rax, -3104[rbp]
	mov	QWORD PTR -3152[rbp], rax
	add	QWORD PTR -3152[rbp], 1
	mov	DWORD PTR -3168[rbp], 0
	jmp	.L182
.L185:
	cmp	DWORD PTR -3168[rbp], 131
	jle	.L183
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, QWORD PTR -3200[rbp]
	mov	rdx, QWORD PTR -3160[rbp]
	lea	rsi, .LC37[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR -3192[rbp]
	mov	rdi, rax
	call	fclose@PLT
	mov	eax, -1
	jmp	.L204
.L183:
	mov	rax, QWORD PTR -3152[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -3152[rbp], rdx
	mov	rsi, QWORD PTR -3136[rbp]
	mov	edx, DWORD PTR -3168[rbp]
	lea	ecx, 1[rdx]
	mov	DWORD PTR -3168[rbp], ecx
	movsx	rdx, edx
	add	rdx, rsi
	movzx	eax, BYTE PTR [rax]
	mov	BYTE PTR [rdx], al
.L182:
	mov	rax, QWORD PTR -3152[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	je	.L184
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR -3152[rbp]
	movzx	eax, BYTE PTR [rax]
	movsx	rax, al
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 8192
	test	eax, eax
	je	.L185
.L184:
	cmp	DWORD PTR -3168[rbp], 131
	jg	.L186
	mov	rdx, QWORD PTR -3136[rbp]
	mov	eax, DWORD PTR -3168[rbp]
	cdqe
	add	rax, rdx
	mov	BYTE PTR [rax], 0
.L186:
	mov	DWORD PTR -3120[rbp], 0
	jmp	.L187
.L200:
	lea	rax, -3104[rbp]
	mov	QWORD PTR -3152[rbp], rax
	jmp	.L188
.L198:
	call	__ctype_b_loc@PLT
	mov	rdx, QWORD PTR [rax]
	movsx	rax, BYTE PTR -3173[rbp]
	add	rax, rax
	add	rax, rdx
	movzx	eax, WORD PTR [rax]
	movzx	eax, ax
	and	eax, 1024
	test	eax, eax
	je	.L188
	movsx	eax, BYTE PTR -3173[rbp]
	mov	edi, eax
	call	toupper@PLT
	mov	BYTE PTR -3173[rbp], al
	movsx	eax, BYTE PTR -3173[rbp]
	sub	eax, 65
	cmp	eax, 19
	ja	.L189
	mov	eax, eax
	lea	rdx, 0[0+rax*4]
	lea	rax, .L191[rip]
	mov	eax, DWORD PTR [rdx+rax]
	cdqe
	lea	rdx, .L191[rip]
	add	rax, rdx
	notrack jmp	rax
	.section	.rodata
	.align 4
	.align 4
.L191:
	.long	.L195-.L191
	.long	.L189-.L191
	.long	.L194-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L193-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L192-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L189-.L191
	.long	.L190-.L191
	.text
.L195:
	mov	DWORD PTR -3164[rbp], 0
	jmp	.L196
.L194:
	mov	DWORD PTR -3164[rbp], 1
	jmp	.L196
.L193:
	mov	DWORD PTR -3164[rbp], 2
	jmp	.L196
.L190:
	mov	DWORD PTR -3164[rbp], 3
	jmp	.L196
.L192:
	mov	DWORD PTR -3164[rbp], 4
	jmp	.L196
.L189:
	mov	DWORD PTR -3164[rbp], 4
.L196:
	mov	eax, DWORD PTR -3120[rbp]
	cmp	DWORD PTR -3172[rbp], eax
	jg	.L197
	add	DWORD PTR -3172[rbp], 3072
	mov	eax, DWORD PTR -3172[rbp]
	cdqe
	lea	rdx, 0[0+rax*4]
	mov	rax, QWORD PTR -3128[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	realloc@PLT
	mov	QWORD PTR -3128[rbp], rax
.L197:
	mov	rcx, QWORD PTR -3128[rbp]
	mov	eax, DWORD PTR -3120[rbp]
	lea	edx, 1[rax]
	mov	DWORD PTR -3120[rbp], edx
	cdqe
	sal	rax, 2
	lea	rdx, [rcx+rax]
	mov	eax, DWORD PTR -3164[rbp]
	mov	DWORD PTR [rdx], eax
.L188:
	mov	rax, QWORD PTR -3152[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -3152[rbp], rdx
	movzx	eax, BYTE PTR [rax]
	mov	BYTE PTR -3173[rbp], al
	cmp	BYTE PTR -3173[rbp], 0
	jne	.L198
.L187:
	mov	rdx, QWORD PTR -3192[rbp]
	lea	rax, -3104[rbp]
	mov	esi, 3072
	mov	rdi, rax
	call	fgets@PLT
	mov	QWORD PTR -3160[rbp], rax
	cmp	QWORD PTR -3160[rbp], 0
	je	.L199
	movzx	eax, BYTE PTR -3104[rbp]
	cmp	al, 62
	jne	.L200
.L199:
	mov	eax, DWORD PTR -3120[rbp]
	test	eax, eax
	je	.L181
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L201
	mov	rdx, QWORD PTR -3208[rbp]
	lea	rax, -3136[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	process_seq_lpm
	jmp	.L181
.L201:
	mov	rdx, QWORD PTR -3208[rbp]
	lea	rax, -3136[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	process_seq_pwm
.L181:
	cmp	QWORD PTR -3160[rbp], 0
	jne	.L202
	mov	rax, QWORD PTR -3136[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR -3128[rbp]
	mov	rdi, rax
	call	free@PLT
	mov	rax, QWORD PTR stdin[rip]
	cmp	QWORD PTR -3192[rbp], rax
	je	.L203
	mov	rax, QWORD PTR -3192[rbp]
	mov	rdi, rax
	call	fclose@PLT
.L203:
	mov	eax, 0
.L204:
	mov	rbx, QWORD PTR -24[rbp]
	sub	rbx, QWORD PTR fs:40
	je	.L205
	call	__stack_chk_fail@PLT
.L205:
	mov	rbx, QWORD PTR -8[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE9:
	.size	process_file, .-process_file
	.section	.rodata
.LC38:
	.string	"the_stack_data/594020.c"
.LC39:
	.string	"idx < count"
.LC40:
	.string	"idx == count - 1"
	.text
	.globl	str_split
	.type	str_split, @function
str_split:
.LFB10:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	rbx
	sub	rsp, 88
	.cfi_offset 3, -24
	mov	QWORD PTR -88[rbp], rdi
	mov	eax, esi
	mov	BYTE PTR -92[rbp], al
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -24[rbp], rax
	xor	eax, eax
	mov	QWORD PTR -40[rbp], 0
	mov	QWORD PTR -80[rbp], 0
	mov	rax, QWORD PTR -88[rbp]
	mov	QWORD PTR -72[rbp], rax
	mov	QWORD PTR -64[rbp], 0
	movzx	eax, BYTE PTR -92[rbp]
	mov	BYTE PTR -26[rbp], al
	mov	BYTE PTR -25[rbp], 0
	jmp	.L208
.L210:
	mov	rax, QWORD PTR -72[rbp]
	movzx	eax, BYTE PTR [rax]
	cmp	BYTE PTR -92[rbp], al
	jne	.L209
	add	QWORD PTR -80[rbp], 1
	mov	rax, QWORD PTR -72[rbp]
	mov	QWORD PTR -64[rbp], rax
.L209:
	add	QWORD PTR -72[rbp], 1
.L208:
	mov	rax, QWORD PTR -72[rbp]
	movzx	eax, BYTE PTR [rax]
	test	al, al
	jne	.L210
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	strlen@PLT
	lea	rdx, -1[rax]
	mov	rax, QWORD PTR -88[rbp]
	add	rax, rdx
	cmp	QWORD PTR -64[rbp], rax
	setb	al
	movzx	eax, al
	add	QWORD PTR -80[rbp], rax
	add	QWORD PTR -80[rbp], 1
	mov	rax, QWORD PTR -80[rbp]
	sal	rax, 3
	mov	rdi, rax
	call	malloc@PLT
	mov	QWORD PTR -40[rbp], rax
	cmp	QWORD PTR -40[rbp], 0
	je	.L211
	mov	QWORD PTR -56[rbp], 0
	lea	rdx, -26[rbp]
	mov	rax, QWORD PTR -88[rbp]
	mov	rsi, rdx
	mov	rdi, rax
	call	strtok@PLT
	mov	QWORD PTR -48[rbp], rax
	jmp	.L212
.L214:
	mov	rax, QWORD PTR -56[rbp]
	cmp	rax, QWORD PTR -80[rbp]
	jb	.L213
	lea	rcx, __PRETTY_FUNCTION__.1[rip]
	mov	edx, 705
	lea	rsi, .LC38[rip]
	lea	rdi, .LC39[rip]
	call	__assert_fail@PLT
.L213:
	mov	rax, QWORD PTR -56[rbp]
	lea	rdx, 1[rax]
	mov	QWORD PTR -56[rbp], rdx
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	lea	rbx, [rdx+rax]
	mov	rax, QWORD PTR -48[rbp]
	mov	rdi, rax
	call	strdup@PLT
	mov	QWORD PTR [rbx], rax
	lea	rax, -26[rbp]
	mov	rsi, rax
	mov	edi, 0
	call	strtok@PLT
	mov	QWORD PTR -48[rbp], rax
.L212:
	cmp	QWORD PTR -48[rbp], 0
	jne	.L214
	mov	rax, QWORD PTR -80[rbp]
	sub	rax, 1
	cmp	QWORD PTR -56[rbp], rax
	je	.L215
	lea	rcx, __PRETTY_FUNCTION__.1[rip]
	mov	edx, 709
	lea	rsi, .LC38[rip]
	lea	rdi, .LC40[rip]
	call	__assert_fail@PLT
.L215:
	mov	rax, QWORD PTR -56[rbp]
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	mov	QWORD PTR [rax], 0
.L211:
	mov	rax, QWORD PTR -40[rbp]
	mov	rcx, QWORD PTR -24[rbp]
	sub	rcx, QWORD PTR fs:40
	je	.L217
	call	__stack_chk_fail@PLT
.L217:
	mov	rbx, QWORD PTR -8[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE10:
	.size	str_split, .-str_split
	.section	.rodata
.LC42:
	.string	"bdhfm:p:uqrw:"
	.align 8
.LC43:
	.string	"?? getopt returned character code 0%o ??\n"
	.align 8
.LC44:
	.ascii	"Usage: %s [options] -m <matrix_file> [<] <fasta_file>\n   wh"
	.ascii	"ere options are:\n     -b[--best]             Compute best s"
	.ascii	"ingle match scores\n     -d[--debug]            Produce debu"
	.ascii	"gging output\n     -h[--help]             Show this stuff\n "
	.ascii	"    -f[--forward]          Scan sequences in forward directi"
	.ascii	"on [def=bidirectional]\n     -u[--unorm]            Normaliz"
	.ascii	"e pwm scores by a uniform background base composition (Defau"
	.ascii	"lt=0.25)\n     -p[--prob] <bg freq>   Normalize pwm scores b"
	.ascii	"y library-dependent nucleotide frequencies <bg freq>: 0.29,0"
	.ascii	".21,0.21,0.29\n                            Note that nucleot"
	.ascii	"ide frequencies (<bg freq>) MUST BE comma-separated\n     -q"
	.ascii	"[--seqnorm]          Normalize pwm scores by sequence-based "
	.ascii	"nucleotide composition\n     -r[--nohdr]            Output r"
	.ascii	"aw scores (with no FASTA header)\n     --lpm                "
	.ascii	"  Input matrix is a letter probability matrix (LPM) [Default"
	.ascii	"]\n     --pwm                  Input matrix is a position we"
	.ascii	"ight matrix (PWM)\n     -w[--pweight]          Set a pseudo-"
	.ascii	"weight to re-normalize the frequencies of the letter-probabi"
	.ascii	"lity matrix (LPM)\n                            Recommended v"
	.ascii	"alue is 0.0001 [Default=0.0]\n\n   Score a set of nucleotide"
	.ascii	" sequences in FASTA format (<fasta_file>), based on matches "
	.ascii	"to a sequence motif\n   represented by an INTEGER position w"
	.ascii	"eight matrix [--pwm] or a base probability matrix ["
	.string	"--lpm] (<matrix_file>).\n   Note that the background normalization options (-u, -p, -q) are only valid for base probability matrices.\n   For integer PWMs, only the best single match scores are reported, along with the position, strand, and sequence match.\n\n"
	.align 8
.LC45:
	.string	"Could not allocate matrix array: %s(%d)\n"
.LC46:
	.string	"Number of TOKENS: %d\n"
	.align 8
.LC47:
	.string	"Please, specify correct library-dependent nucleotide frequencies <bg freq>: they MUST BE comma-separated!\n"
.LC48:
	.string	"-"
.LC49:
	.string	"Unable to open '%s': %s(%d)\n"
.LC50:
	.string	"Fasta File : %s\n"
.LC51:
	.string	"Sequence File from STDIN\n"
.LC52:
	.string	"Motif length: %d\n"
.LC53:
	.string	"Weight Matrix: \n\n"
.LC54:
	.string	"%c "
.LC55:
	.string	" %f "
.LC56:
	.string	"]\n"
.LC57:
	.string	" %d "
	.align 8
.LC58:
	.string	"Weight Matrix: vertical representation (columns represent the four nucleotides ACGT)\n\n"
	.align 8
.LC59:
	.string	"Background nucleotide frequencies:[%s]\n"
.LC60:
	.string	"bg[%i] = %.2f "
	.align 8
.LC61:
	.string	"Sequence-based nucleotide composition\n"
	.align 8
.LC62:
	.string	"Compute best match scores instead of sum of probabilities\n"
	.align 8
.LC63:
	.string	"Scanning sequences in forward direction only\n"
	.text
	.globl	main
	.type	main, @function
main:
.LFB11:
	.cfi_startproc
	endbr64
	push	rbp
	.cfi_def_cfa_offset 16
	.cfi_offset 6, -16
	mov	rbp, rsp
	.cfi_def_cfa_register 6
	push	rbx
	sub	rsp, 152
	.cfi_offset 3, -24
	mov	DWORD PTR -148[rbp], edi
	mov	QWORD PTR -160[rbp], rsi
	mov	rax, QWORD PTR fs:40
	mov	QWORD PTR -24[rbp], rax
	xor	eax, eax
	mov	QWORD PTR -88[rbp], 0
	mov	QWORD PTR -80[rbp], 0
	mov	DWORD PTR -136[rbp], 0
	movsd	xmm0, QWORD PTR .LC41[rip]
	movsd	QWORD PTR -48[rbp], xmm0
	mov	DWORD PTR options[rip+16], 1
	mov	DWORD PTR options[rip+12], 0
	mov	DWORD PTR -140[rbp], 0
.L236:
	lea	rdx, -140[rbp]
	mov	rsi, QWORD PTR -160[rbp]
	mov	eax, DWORD PTR -148[rbp]
	mov	r8, rdx
	lea	rcx, long_options.0[rip]
	lea	rdx, .LC42[rip]
	mov	edi, eax
	call	getopt_long@PLT
	mov	DWORD PTR -96[rbp], eax
	cmp	DWORD PTR -96[rbp], -1
	je	.L314
	cmp	DWORD PTR -96[rbp], 0
	je	.L221
	cmp	DWORD PTR -96[rbp], 0
	js	.L222
	cmp	DWORD PTR -96[rbp], 119
	jg	.L222
	cmp	DWORD PTR -96[rbp], 63
	jl	.L222
	mov	eax, DWORD PTR -96[rbp]
	sub	eax, 63
	cmp	eax, 56
	ja	.L222
	mov	eax, eax
	lea	rdx, 0[0+rax*4]
	lea	rax, .L224[rip]
	mov	eax, DWORD PTR [rdx+rax]
	cdqe
	lea	rdx, .L224[rip]
	add	rax, rdx
	notrack jmp	rax
	.section	.rodata
	.align 4
	.align 4
.L224:
	.long	.L315-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L233-.L224
	.long	.L222-.L224
	.long	.L232-.L224
	.long	.L222-.L224
	.long	.L231-.L224
	.long	.L222-.L224
	.long	.L230-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L229-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L228-.L224
	.long	.L227-.L224
	.long	.L226-.L224
	.long	.L222-.L224
	.long	.L222-.L224
	.long	.L225-.L224
	.long	.L222-.L224
	.long	.L223-.L224
	.text
.L233:
	mov	DWORD PTR options[rip+32], 1
	jmp	.L235
.L232:
	mov	DWORD PTR options[rip+4], 1
	jmp	.L235
.L230:
	mov	DWORD PTR options[rip], 1
	jmp	.L235
.L231:
	mov	DWORD PTR options[rip+36], 1
	jmp	.L235
.L229:
	mov	rax, QWORD PTR optarg[rip]
	mov	QWORD PTR -88[rbp], rax
	jmp	.L235
.L228:
	mov	rax, QWORD PTR optarg[rip]
	mov	QWORD PTR -80[rbp], rax
	mov	DWORD PTR options[rip+24], 1
	jmp	.L235
.L227:
	mov	DWORD PTR options[rip+20], 1
	jmp	.L235
.L225:
	mov	DWORD PTR options[rip+8], 1
	jmp	.L235
.L226:
	mov	DWORD PTR options[rip+28], 1
	jmp	.L235
.L223:
	mov	rax, QWORD PTR optarg[rip]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	QWORD PTR pseudo_weight[rip], rax
	jmp	.L235
.L221:
	mov	eax, DWORD PTR -140[rbp]
	cdqe
	sal	rax, 5
	mov	rdx, rax
	lea	rax, long_options.0[rip+16]
	mov	rax, QWORD PTR [rdx+rax]
	test	rax, rax
	jmp	.L315
.L222:
	mov	eax, DWORD PTR -96[rbp]
	mov	esi, eax
	lea	rdi, .LC43[rip]
	mov	eax, 0
	call	printf@PLT
	jmp	.L236
.L315:
	nop
.L235:
	jmp	.L236
.L314:
	nop
	mov	eax, DWORD PTR optind[rip]
	cmp	DWORD PTR -148[rbp], eax
	jl	.L237
	cmp	QWORD PTR -88[rbp], 0
	jne	.L238
.L237:
	mov	rax, QWORD PTR -160[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC44[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, 1
	jmp	.L310
.L238:
	mov	eax, DWORD PTR options[rip+12]
	test	eax, eax
	je	.L240
	mov	DWORD PTR options[rip+16], 0
.L240:
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L241
	mov	esi, 8
	mov	edi, 5
	call	calloc@PLT
	mov	QWORD PTR lpm[rip], rax
	mov	rax, QWORD PTR lpm[rip]
	test	rax, rax
	jne	.L242
	call	__errno_location@PLT
	mov	ebx, DWORD PTR [rax]
	call	__errno_location@PLT
	mov	eax, DWORD PTR [rax]
	mov	edi, eax
	call	strerror@PLT
	mov	rdx, rax
	mov	rax, QWORD PTR stderr[rip]
	mov	ecx, ebx
	lea	rsi, .LC45[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, 1
	jmp	.L310
.L242:
	mov	DWORD PTR -136[rbp], 0
	jmp	.L243
.L245:
	mov	eax, DWORD PTR matLen[rip]
	cdqe
	mov	rcx, QWORD PTR lpm[rip]
	mov	edx, DWORD PTR -136[rbp]
	movsx	rdx, edx
	sal	rdx, 3
	lea	rbx, [rcx+rdx]
	mov	esi, 8
	mov	rdi, rax
	call	calloc@PLT
	mov	QWORD PTR [rbx], rax
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	test	rax, rax
	jne	.L244
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 14
	mov	esi, 1
	lea	rdi, .LC10[rip]
	call	fwrite@PLT
	mov	eax, 1
	jmp	.L310
.L244:
	add	DWORD PTR -136[rbp], 1
.L243:
	cmp	DWORD PTR -136[rbp], 4
	jle	.L245
	jmp	.L246
.L241:
	mov	DWORD PTR options[rip+20], 0
	mov	DWORD PTR options[rip+8], 0
	mov	DWORD PTR options[rip+24], 0
	mov	esi, 8
	mov	edi, 5
	call	calloc@PLT
	mov	QWORD PTR pwm[rip], rax
	mov	rax, QWORD PTR pwm[rip]
	test	rax, rax
	jne	.L247
	call	__errno_location@PLT
	mov	ebx, DWORD PTR [rax]
	call	__errno_location@PLT
	mov	eax, DWORD PTR [rax]
	mov	edi, eax
	call	strerror@PLT
	mov	rdx, rax
	mov	rax, QWORD PTR stderr[rip]
	mov	ecx, ebx
	lea	rsi, .LC45[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	eax, 1
	jmp	.L310
.L247:
	mov	DWORD PTR -136[rbp], 0
	jmp	.L248
.L250:
	mov	eax, DWORD PTR matLen[rip]
	cdqe
	mov	rcx, QWORD PTR pwm[rip]
	mov	edx, DWORD PTR -136[rbp]
	movsx	rdx, edx
	sal	rdx, 3
	lea	rbx, [rcx+rdx]
	mov	esi, 4
	mov	rdi, rax
	call	calloc@PLT
	mov	QWORD PTR [rbx], rax
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	test	rax, rax
	jne	.L249
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 14
	mov	esi, 1
	lea	rdi, .LC10[rip]
	call	fwrite@PLT
	mov	eax, 1
	jmp	.L310
.L249:
	add	DWORD PTR -136[rbp], 1
.L248:
	cmp	DWORD PTR -136[rbp], 4
	jle	.L250
.L246:
	mov	rax, QWORD PTR -88[rbp]
	mov	rdi, rax
	call	read_profile
	mov	DWORD PTR matLen[rip], eax
	mov	eax, DWORD PTR matLen[rip]
	test	eax, eax
	jg	.L251
	mov	eax, 1
	jmp	.L310
.L251:
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L252
	mov	DWORD PTR -136[rbp], 0
	jmp	.L253
.L254:
	mov	rax, QWORD PTR lpm[rip]
	add	rax, 32
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm0, QWORD PTR -48[rbp]
	movsd	QWORD PTR [rax], xmm0
	add	DWORD PTR -136[rbp], 1
.L253:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -136[rbp], eax
	jl	.L254
	movsd	xmm0, QWORD PTR pseudo_weight[rip]
	pxor	xmm1, xmm1
	ucomisd	xmm0, xmm1
	jp	.L312
	pxor	xmm1, xmm1
	comisd	xmm0, xmm1
	je	.L255
.L312:
	mov	DWORD PTR -132[rbp], 0
	jmp	.L257
.L262:
	pxor	xmm0, xmm0
	movsd	QWORD PTR -72[rbp], xmm0
	mov	DWORD PTR -128[rbp], 0
	jmp	.L258
.L259:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -128[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm1, QWORD PTR [rax]
	movsd	xmm0, QWORD PTR pseudo_weight[rip]
	addsd	xmm0, xmm1
	movsd	xmm1, QWORD PTR -72[rbp]
	addsd	xmm0, xmm1
	movsd	QWORD PTR -72[rbp], xmm0
	add	DWORD PTR -128[rbp], 1
.L258:
	cmp	DWORD PTR -128[rbp], 3
	jle	.L259
	mov	DWORD PTR -124[rbp], 0
	jmp	.L260
.L261:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -124[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm1, QWORD PTR [rax]
	movsd	xmm0, QWORD PTR pseudo_weight[rip]
	addsd	xmm0, xmm1
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -124[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -132[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	divsd	xmm0, QWORD PTR -72[rbp]
	movsd	QWORD PTR [rax], xmm0
	add	DWORD PTR -124[rbp], 1
.L260:
	cmp	DWORD PTR -124[rbp], 3
	jle	.L261
	add	DWORD PTR -132[rbp], 1
.L257:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -132[rbp], eax
	jl	.L262
	jmp	.L255
.L252:
	mov	DWORD PTR -136[rbp], 0
	jmp	.L263
.L264:
	mov	rax, QWORD PTR pwm[rip]
	add	rax, 32
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	DWORD PTR [rax], -2147483648
	add	DWORD PTR -136[rbp], 1
.L263:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -136[rbp], eax
	jl	.L264
.L255:
	mov	eax, DWORD PTR options[rip+8]
	test	eax, eax
	je	.L265
	mov	DWORD PTR -120[rbp], 0
	jmp	.L266
.L269:
	mov	DWORD PTR -136[rbp], 0
	jmp	.L267
.L268:
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	movsd	xmm0, QWORD PTR -48[rbp]
	movsd	QWORD PTR [rdx+rax], xmm0
	add	DWORD PTR -136[rbp], 1
.L267:
	cmp	DWORD PTR -136[rbp], 3
	jle	.L268
	add	DWORD PTR -120[rbp], 1
.L266:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -120[rbp], eax
	jl	.L269
	jmp	.L270
.L265:
	mov	eax, DWORD PTR options[rip+24]
	test	eax, eax
	je	.L270
	mov	rax, QWORD PTR -80[rbp]
	mov	esi, 44
	mov	rdi, rax
	call	str_split
	mov	QWORD PTR -40[rbp], rax
	cmp	QWORD PTR -40[rbp], 0
	je	.L270
	mov	DWORD PTR -116[rbp], 0
	jmp	.L271
.L272:
	mov	eax, DWORD PTR -116[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	atof@PLT
	movq	rax, xmm0
	mov	edx, DWORD PTR -116[rbp]
	movsx	rdx, edx
	lea	rcx, 0[0+rdx*8]
	lea	rdx, bg[rip]
	mov	QWORD PTR [rcx+rdx], rax
	mov	eax, DWORD PTR -116[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	free@PLT
	add	DWORD PTR -116[rbp], 1
.L271:
	mov	eax, DWORD PTR -116[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -40[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	test	rax, rax
	jne	.L272
	cmp	DWORD PTR -116[rbp], 4
	je	.L273
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -116[rbp]
	lea	rsi, .LC46[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 106
	mov	esi, 1
	lea	rdi, .LC47[rip]
	call	fwrite@PLT
	mov	edi, 1
	call	exit@PLT
.L273:
	mov	rax, QWORD PTR -40[rbp]
	mov	rdi, rax
	call	free@PLT
.L270:
	mov	eax, DWORD PTR optind[rip]
	cmp	DWORD PTR -148[rbp], eax
	jle	.L274
	mov	eax, DWORD PTR optind[rip]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC48[rip]
	mov	rdi, rax
	call	strcmp@PLT
	test	eax, eax
	jne	.L275
	mov	rax, QWORD PTR stdin[rip]
	mov	QWORD PTR fasta_in[rip], rax
	jmp	.L276
.L275:
	mov	eax, DWORD PTR optind[rip]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	lea	rsi, .LC0[rip]
	mov	rdi, rax
	call	fopen@PLT
	mov	QWORD PTR fasta_in[rip], rax
	mov	rax, QWORD PTR fasta_in[rip]
	test	rax, rax
	jne	.L277
	call	__errno_location@PLT
	mov	ebx, DWORD PTR [rax]
	call	__errno_location@PLT
	mov	eax, DWORD PTR [rax]
	mov	edi, eax
	call	strerror@PLT
	mov	rcx, rax
	mov	eax, DWORD PTR optind[rip]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	mov	r8d, ebx
	lea	rsi, .LC49[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	edi, 1
	call	exit@PLT
.L277:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L276
	mov	eax, DWORD PTR optind[rip]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC2[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	jmp	.L276
.L274:
	mov	rax, QWORD PTR stdin[rip]
	mov	QWORD PTR fasta_in[rip], rax
.L276:
	mov	eax, DWORD PTR options[rip+4]
	test	eax, eax
	je	.L278
	mov	rdx, QWORD PTR fasta_in[rip]
	mov	rax, QWORD PTR stdin[rip]
	cmp	rdx, rax
	je	.L279
	mov	eax, DWORD PTR optind[rip]
	cdqe
	lea	rdx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC50[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	jmp	.L280
.L279:
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 25
	mov	esi, 1
	lea	rdi, .LC51[rip]
	call	fwrite@PLT
.L280:
	mov	edx, DWORD PTR matLen[rip]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC52[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 17
	mov	esi, 1
	lea	rdi, .LC53[rip]
	call	fwrite@PLT
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L281
	mov	DWORD PTR -112[rbp], 0
	jmp	.L282
.L285:
	mov	eax, DWORD PTR -112[rbp]
	cdqe
	lea	rdx, nucleotide[rip]
	movzx	eax, BYTE PTR [rax+rdx]
	movsx	edx, al
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC54[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 91
	call	fputc@PLT
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -112[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	QWORD PTR -64[rbp], rax
	jmp	.L283
.L284:
	mov	rax, QWORD PTR -64[rbp]
	mov	rdx, QWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	movq	xmm0, rdx
	lea	rsi, .LC55[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	add	QWORD PTR -64[rbp], 8
.L283:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -112[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR matLen[rip]
	cdqe
	sal	rax, 3
	add	rax, rdx
	cmp	QWORD PTR -64[rbp], rax
	jb	.L284
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 2
	mov	esi, 1
	lea	rdi, .LC56[rip]
	call	fwrite@PLT
	add	DWORD PTR -112[rbp], 1
.L282:
	cmp	DWORD PTR -112[rbp], 4
	jle	.L285
	jmp	.L286
.L281:
	mov	DWORD PTR -108[rbp], 0
	jmp	.L287
.L290:
	mov	eax, DWORD PTR -108[rbp]
	cdqe
	lea	rdx, nucleotide[rip]
	movzx	eax, BYTE PTR [rax+rdx]
	movsx	edx, al
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC54[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 91
	call	fputc@PLT
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -108[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	QWORD PTR -56[rbp], rax
	jmp	.L288
.L289:
	mov	rax, QWORD PTR -56[rbp]
	mov	edx, DWORD PTR [rax]
	mov	rax, QWORD PTR stderr[rip]
	lea	rsi, .LC57[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	add	QWORD PTR -56[rbp], 4
.L288:
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -108[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR matLen[rip]
	cdqe
	sal	rax, 2
	add	rax, rdx
	cmp	QWORD PTR -56[rbp], rax
	jb	.L289
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 2
	mov	esi, 1
	lea	rdi, .LC56[rip]
	call	fwrite@PLT
	add	DWORD PTR -108[rbp], 1
.L287:
	cmp	DWORD PTR -108[rbp], 4
	jle	.L290
.L286:
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 86
	mov	esi, 1
	lea	rdi, .LC58[rip]
	call	fwrite@PLT
	mov	DWORD PTR -104[rbp], 0
	mov	DWORD PTR -104[rbp], 0
	jmp	.L291
.L296:
	mov	DWORD PTR -100[rbp], 0
	jmp	.L292
.L295:
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L293
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -100[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -104[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	movsd	xmm0, QWORD PTR [rax]
	movsd	QWORD PTR -32[rbp], xmm0
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -32[rbp]
	movq	xmm0, rdx
	lea	rsi, .LC55[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	jmp	.L294
.L293:
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -100[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rdx, QWORD PTR [rax]
	mov	eax, DWORD PTR -104[rbp]
	cdqe
	sal	rax, 2
	add	rax, rdx
	mov	eax, DWORD PTR [rax]
	mov	DWORD PTR -92[rbp], eax
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -92[rbp]
	lea	rsi, .LC57[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
.L294:
	add	DWORD PTR -100[rbp], 1
.L292:
	cmp	DWORD PTR -100[rbp], 3
	jle	.L295
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
	add	DWORD PTR -104[rbp], 1
.L291:
	mov	eax, DWORD PTR matLen[rip]
	cmp	DWORD PTR -104[rbp], eax
	jl	.L296
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
	mov	eax, DWORD PTR options[rip+24]
	test	eax, eax
	je	.L297
	mov	rax, QWORD PTR stderr[rip]
	mov	rdx, QWORD PTR -80[rbp]
	lea	rsi, .LC59[rip]
	mov	rdi, rax
	mov	eax, 0
	call	fprintf@PLT
	mov	DWORD PTR -136[rbp], 0
	jmp	.L298
.L299:
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	lea	rdx, 0[0+rax*8]
	lea	rax, bg[rip]
	mov	rcx, QWORD PTR [rdx+rax]
	mov	rax, QWORD PTR stderr[rip]
	mov	edx, DWORD PTR -136[rbp]
	movq	xmm0, rcx
	lea	rsi, .LC60[rip]
	mov	rdi, rax
	mov	eax, 1
	call	fprintf@PLT
	add	DWORD PTR -136[rbp], 1
.L298:
	cmp	DWORD PTR -136[rbp], 4
	jle	.L299
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 2
	mov	esi, 1
	lea	rdi, .LC22[rip]
	call	fwrite@PLT
.L297:
	mov	eax, DWORD PTR options[rip+20]
	test	eax, eax
	je	.L300
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 38
	mov	esi, 1
	lea	rdi, .LC61[rip]
	call	fwrite@PLT
.L300:
	mov	eax, DWORD PTR options[rip+32]
	test	eax, eax
	je	.L301
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 58
	mov	esi, 1
	lea	rdi, .LC62[rip]
	call	fwrite@PLT
.L301:
	mov	eax, DWORD PTR options[rip+36]
	test	eax, eax
	je	.L302
	mov	rax, QWORD PTR stderr[rip]
	mov	rcx, rax
	mov	edx, 45
	mov	esi, 1
	lea	rdi, .LC63[rip]
	call	fwrite@PLT
.L302:
	mov	rax, QWORD PTR stderr[rip]
	mov	rsi, rax
	mov	edi, 10
	call	fputc@PLT
.L278:
	mov	rdx, QWORD PTR stdout[rip]
	mov	eax, DWORD PTR optind[rip]
	lea	ecx, 1[rax]
	mov	DWORD PTR optind[rip], ecx
	cdqe
	lea	rcx, 0[0+rax*8]
	mov	rax, QWORD PTR -160[rbp]
	add	rax, rcx
	mov	rcx, QWORD PTR [rax]
	mov	rax, QWORD PTR fasta_in[rip]
	mov	rsi, rcx
	mov	rdi, rax
	call	process_file
	test	eax, eax
	je	.L303
	mov	eax, 1
	jmp	.L310
.L303:
	mov	eax, DWORD PTR options[rip+16]
	test	eax, eax
	je	.L304
	mov	DWORD PTR -136[rbp], 0
	jmp	.L305
.L306:
	mov	rdx, QWORD PTR lpm[rip]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	free@PLT
	add	DWORD PTR -136[rbp], 1
.L305:
	cmp	DWORD PTR -136[rbp], 4
	jle	.L306
	mov	rax, QWORD PTR lpm[rip]
	mov	rdi, rax
	call	free@PLT
	jmp	.L307
.L304:
	mov	DWORD PTR -136[rbp], 0
	jmp	.L308
.L309:
	mov	rdx, QWORD PTR pwm[rip]
	mov	eax, DWORD PTR -136[rbp]
	cdqe
	sal	rax, 3
	add	rax, rdx
	mov	rax, QWORD PTR [rax]
	mov	rdi, rax
	call	free@PLT
	add	DWORD PTR -136[rbp], 1
.L308:
	cmp	DWORD PTR -136[rbp], 4
	jle	.L309
	mov	rax, QWORD PTR pwm[rip]
	mov	rdi, rax
	call	free@PLT
.L307:
	mov	eax, 0
.L310:
	mov	rbx, QWORD PTR -24[rbp]
	sub	rbx, QWORD PTR fs:40
	je	.L311
	call	__stack_chk_fail@PLT
.L311:
	mov	rbx, QWORD PTR -8[rbp]
	leave
	.cfi_def_cfa 7, 8
	ret
	.cfi_endproc
.LFE11:
	.size	main, .-main
	.section	.rodata
	.align 8
	.type	__PRETTY_FUNCTION__.1, @object
	.size	__PRETTY_FUNCTION__.1, 10
__PRETTY_FUNCTION__.1:
	.string	"str_split"
.LC64:
	.string	"best"
.LC65:
	.string	"debug"
.LC66:
	.string	"help"
.LC67:
	.string	"forward"
.LC68:
	.string	"matrix"
.LC69:
	.string	"prob"
.LC70:
	.string	"seqnorm"
.LC71:
	.string	"unorm"
.LC72:
	.string	"nohdr"
.LC73:
	.string	"pweight"
.LC74:
	.string	"lpm"
.LC75:
	.string	"pwm"
	.section	.data.rel.local,"aw"
	.align 32
	.type	long_options.0, @object
	.size	long_options.0, 416
long_options.0:
	.quad	.LC64
	.long	0
	.zero	4
	.quad	0
	.long	98
	.zero	4
	.quad	.LC65
	.long	0
	.zero	4
	.quad	0
	.long	100
	.zero	4
	.quad	.LC66
	.long	0
	.zero	4
	.quad	0
	.long	104
	.zero	4
	.quad	.LC67
	.long	0
	.zero	4
	.quad	0
	.long	102
	.zero	4
	.quad	.LC68
	.long	1
	.zero	4
	.quad	0
	.long	109
	.zero	4
	.quad	.LC69
	.long	1
	.zero	4
	.quad	0
	.long	112
	.zero	4
	.quad	.LC70
	.long	0
	.zero	4
	.quad	0
	.long	113
	.zero	4
	.quad	.LC71
	.long	0
	.zero	4
	.quad	0
	.long	117
	.zero	4
	.quad	.LC72
	.long	0
	.zero	4
	.quad	0
	.long	114
	.zero	4
	.quad	.LC73
	.long	1
	.zero	4
	.quad	0
	.long	119
	.zero	4
	.quad	.LC74
	.long	0
	.zero	4
	.quad	options+16
	.long	1
	.zero	4
	.quad	.LC75
	.long	0
	.zero	4
	.quad	options+12
	.long	1
	.zero	4
	.quad	0
	.long	0
	.zero	4
	.quad	0
	.long	0
	.zero	4
	.section	.rodata
	.align 8
.LC18:
	.long	0
	.long	1074790400
	.align 8
.LC19:
	.long	0
	.long	1071644672
	.align 8
.LC24:
	.long	0
	.long	1072693248
	.align 8
.LC41:
	.long	0
	.long	1070596096
	.ident	"GCC: (Ubuntu 10.5.0-1ubuntu1~20.04) 10.5.0"
	.section	.note.GNU-stack,"",@progbits
	.section	.note.gnu.property,"a"
	.align 8
	.long	 1f - 0f
	.long	 4f - 1f
	.long	 5
0:
	.string	 "GNU"
1:
	.align 8
	.long	 0xc0000002
	.long	 3f - 2f
2:
	.long	 0x3
3:
	.align 8
4:

	.arch armv5t
	.eabi_attribute 20, 1
	.eabi_attribute 21, 1
	.eabi_attribute 23, 3
	.eabi_attribute 24, 1
	.eabi_attribute 25, 1
	.eabi_attribute 26, 2
	.eabi_attribute 30, 6
	.eabi_attribute 34, 0
	.eabi_attribute 18, 4
	.file	"594020.c"
	.text
	.local	options
	.comm	options,40,4
	.data
	.align	2
	.type	nucleotide, %object
	.size	nucleotide, 5
nucleotide:
	.ascii	"ACGTN"
	.align	3
	.type	bg, %object
	.size	bg, 40
bg:
	.word	0
	.word	1072693248
	.word	0
	.word	1072693248
	.word	0
	.word	1072693248
	.word	0
	.word	1072693248
	.word	0
	.word	1070596096
	.comm	fasta_in,4,4
	.comm	seqCnt,4,4
	.comm	lpm,4,4
	.comm	pwm,4,4
	.global	matLen
	.align	2
	.type	matLen, %object
	.size	matLen, 4
matLen:
	.word	10
	.global	pseudo_weight
	.bss
	.align	3
	.type	pseudo_weight, %object
	.size	pseudo_weight, 8
pseudo_weight:
	.space	8
	.section	.rodata
	.align	2
.LC0:
	.ascii	"r\000"
	.align	2
.LC1:
	.ascii	"Could not open file %s: %s(%d)\012\000"
	.align	2
.LC2:
	.ascii	"Processing file %s\012\000"
	.align	2
.LC3:
	.ascii	"process_sga: malloc\000"
	.align	2
.LC4:
	.ascii	"process_file: realloc\000"
	.align	2
.LC5:
	.ascii	"Matrix value is too large \"%s\" \012\000"
	.align	2
.LC6:
	.ascii	"Matrix value for colum 1 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be LPM)\012\000"
	.align	2
.LC7:
	.ascii	"Matrix value for colum 2 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be LPM)\012\000"
	.align	2
.LC8:
	.ascii	"Matrix value for colum 3 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be LPM)\012\000"
	.align	2
.LC9:
	.ascii	"Matrix value for colum 4 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be LPM)\012\000"
	.align	2
.LC10:
	.ascii	"Out of memory\012\000"
	.align	2
.LC11:
	.ascii	"Matrix value for colum 1 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be Integer)\012"
	.ascii	"\000"
	.align	2
.LC12:
	.ascii	"Matrix value for colum 2 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be Integer)\012"
	.ascii	"\000"
	.align	2
.LC13:
	.ascii	"Matrix value for colum 3 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be Integer)\012"
	.ascii	"\000"
	.align	2
.LC14:
	.ascii	"Matrix value for colum 4 (row %d) is missing, pleas"
	.ascii	"e check the matrix format (it should be Integer)\012"
	.ascii	"\000"
	.align	2
.LC15:
	.word	__stack_chk_guard
	.text
	.align	2
	.syntax unified
	.arm
	.fpu softvfp
	.type	read_profile, %function
read_profile:
	@ args = 0, pretend = 0, frame = 96
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, fp, lr}
	add	fp, sp, #12
	sub	sp, sp, #104
	str	r0, [fp, #-104]
	ldr	r3, .L86
	ldr	r3, [r3]
	str	r3, [fp, #-16]
	mov	r3,#0
	ldr	r1, .L86+4
	ldr	r0, [fp, #-104]
	bl	fopen
	str	r0, [fp, #-56]
	mov	r3, #0
	str	r3, [fp, #-96]
	mov	r3, #1024
	str	r3, [fp, #-84]
	ldr	r3, .L86+8
	ldr	r3, [r3]
	str	r3, [fp, #-80]
	mov	r3, #0
	str	r3, [fp, #-48]
	sub	r3, fp, #44
	mov	r2, #0
	str	r2, [r3]
	str	r2, [r3, #4]
	str	r2, [r3, #8]
	str	r2, [r3, #12]
	str	r2, [r3, #16]
	str	r2, [r3, #20]
	str	r2, [r3, #24]
	ldr	r3, [fp, #-56]
	cmp	r3, #0
	bne	.L2
	ldr	r3, .L86+76
	ldr	r4, [r3]
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r0, r3
	bl	strerror
	mov	r5, r0
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	str	r3, [sp]
	mov	r3, r5
	ldr	r2, [fp, #-104]
	ldr	r1, .L86+12
	mov	r0, r4
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L2:
	ldr	r3, .L86+16
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L4
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-104]
	ldr	r1, .L86+20
	mov	r0, r3
	bl	fprintf
.L4:
	ldr	r0, [fp, #-84]
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-92]
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bne	.L5
	ldr	r0, .L86+24
	bl	perror
	mvn	r3, #0
	b	.L84
.L5:
	ldr	r3, .L86+16
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L46
	b	.L7
.L44:
	ldr	r0, [fp, #-92]
	bl	strlen
	str	r0, [fp, #-72]
	b	.L8
.L11:
	ldr	r3, [fp, #-84]
	lsl	r3, r3, #1
	str	r3, [fp, #-84]
	ldr	r1, [fp, #-84]
	ldr	r0, [fp, #-92]
	bl	realloc
	str	r0, [fp, #-92]
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bne	.L9
	ldr	r0, .L86+28
	bl	perror
	mov	r0, #1
	bl	exit
.L9:
	ldr	r2, [fp, #-92]
	ldr	r3, [fp, #-72]
	add	r0, r2, r3
	ldr	r2, [fp, #-84]
	ldr	r3, [fp, #-72]
	sub	r3, r2, r3
	ldr	r2, [fp, #-56]
	mov	r1, r3
	bl	fgets
	str	r0, [fp, #-52]
	ldr	r0, [fp, #-92]
	bl	strlen
	str	r0, [fp, #-72]
.L8:
	ldr	r3, [fp, #-72]
	add	r3, r3, #1
	ldr	r2, [fp, #-84]
	cmp	r2, r3
	bne	.L10
	ldr	r3, [fp, #-72]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L11
.L10:
	ldr	r3, [fp, #-72]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L12
	ldr	r3, [fp, #-72]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
.L12:
	ldr	r3, [fp, #-72]
	sub	r3, r3, #2
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #13
	bne	.L13
	ldr	r3, [fp, #-72]
	sub	r3, r3, #2
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
.L13:
	ldr	r3, [fp, #-92]
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #35
	beq	.L7
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #62
	bne	.L16
	b	.L7
.L17:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L16:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L17
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L18
.L20:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L19
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L19:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L18:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L20
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L20
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #46
	beq	.L20
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #101
	beq	.L20
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L21
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+36
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L21:
	ldr	r3, .L86+40
	ldr	r3, [r3]
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #3
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	stm	r4, {r2-r3}
	b	.L22
.L23:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L22:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L23
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L24
.L26:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L25
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L25:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L24:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L26
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L26
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #46
	beq	.L26
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #101
	beq	.L26
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L27
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+44
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L27:
	ldr	r3, .L86+40
	ldr	r3, [r3]
	add	r3, r3, #4
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #3
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	stm	r4, {r2-r3}
	b	.L28
.L29:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L28:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L29
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L30
.L32:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L31
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L31:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L30:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L32
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L32
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #46
	beq	.L32
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #101
	beq	.L32
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L33
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+48
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L33:
	ldr	r3, .L86+40
	ldr	r3, [r3]
	add	r3, r3, #8
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #3
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	stm	r4, {r2-r3}
	b	.L34
.L35:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L34:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L35
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L36
.L38:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L37
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L37:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L36:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L38
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L38
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #46
	beq	.L38
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #101
	beq	.L38
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L39
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+52
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L39:
	ldr	r3, .L86+40
	ldr	r3, [r3]
	add	r3, r3, #12
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #3
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	stm	r4, {r2-r3}
	ldr	r3, [fp, #-80]
	sub	r3, r3, #1
	ldr	r2, [fp, #-96]
	cmp	r2, r3
	bne	.L40
	mov	r3, #0
	str	r3, [fp, #-68]
	b	.L41
.L43:
	ldr	r3, .L86+40
	ldr	r2, [r3]
	ldr	r3, [fp, #-68]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r0, [r3]
	ldr	r3, [fp, #-80]
	lsl	r1, r3, #4
	ldr	r3, .L86+40
	ldr	r2, [r3]
	ldr	r3, [fp, #-68]
	lsl	r3, r3, #2
	add	r4, r2, r3
	bl	realloc
	mov	r3, r0
	str	r3, [r4]
	ldr	r3, .L86+40
	ldr	r2, [r3]
	ldr	r3, [fp, #-68]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L42
	ldr	r3, .L86+76
	ldr	r3, [r3]
	mov	r2, #14
	mov	r1, #1
	ldr	r0, .L86+80
	bl	fwrite
	mov	r3, #1
	b	.L84
.L42:
	ldr	r3, [fp, #-68]
	add	r3, r3, #1
	str	r3, [fp, #-68]
.L41:
	ldr	r3, [fp, #-68]
	cmp	r3, #4
	ble	.L43
	ldr	r3, [fp, #-80]
	lsl	r3, r3, #1
	str	r3, [fp, #-80]
.L40:
	ldr	r3, [fp, #-96]
	add	r3, r3, #1
	str	r3, [fp, #-96]
.L7:
	ldr	r3, [fp, #-84]
	ldr	r2, [fp, #-56]
	mov	r1, r3
	ldr	r0, [fp, #-92]
	bl	fgets
	str	r0, [fp, #-52]
	ldr	r3, [fp, #-52]
	cmp	r3, #0
	bne	.L44
	b	.L45
.L83:
	ldr	r0, [fp, #-92]
	bl	strlen
	str	r0, [fp, #-64]
	b	.L47
.L50:
	ldr	r3, [fp, #-84]
	lsl	r3, r3, #1
	str	r3, [fp, #-84]
	ldr	r1, [fp, #-84]
	ldr	r0, [fp, #-92]
	bl	realloc
	str	r0, [fp, #-92]
	ldr	r3, [fp, #-92]
	cmp	r3, #0
	bne	.L48
	ldr	r0, .L86+28
	bl	perror
	mov	r0, #1
	bl	exit
.L48:
	ldr	r2, [fp, #-92]
	ldr	r3, [fp, #-64]
	add	r0, r2, r3
	ldr	r2, [fp, #-84]
	ldr	r3, [fp, #-64]
	sub	r3, r2, r3
	ldr	r2, [fp, #-56]
	mov	r1, r3
	bl	fgets
	str	r0, [fp, #-52]
	ldr	r0, [fp, #-92]
	bl	strlen
	str	r0, [fp, #-64]
.L47:
	ldr	r3, [fp, #-64]
	add	r3, r3, #1
	ldr	r2, [fp, #-84]
	cmp	r2, r3
	bne	.L49
	ldr	r3, [fp, #-64]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L50
.L49:
	ldr	r3, [fp, #-64]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #10
	bne	.L51
	ldr	r3, [fp, #-64]
	sub	r3, r3, #1
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
.L51:
	ldr	r3, [fp, #-64]
	sub	r3, r3, #2
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #13
	bne	.L52
	ldr	r3, [fp, #-64]
	sub	r3, r3, #2
	ldr	r2, [fp, #-92]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
.L52:
	ldr	r3, [fp, #-92]
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #35
	beq	.L46
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #62
	bne	.L55
	b	.L46
.L56:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L55:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L56
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L57
.L59:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L58
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L58:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L57:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L59
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L59
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L60
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+56
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L60:
	ldr	r3, .L86+72
	ldr	r3, [r3]
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #2
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	str	r3, [r4]
	b	.L61
.L62:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L61:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L62
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L63
.L65:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L64
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L64:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L63:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L65
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L65
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L66
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+60
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L66:
	ldr	r3, .L86+72
	ldr	r3, [r3]
	add	r3, r3, #4
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #2
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	str	r3, [r4]
	b	.L67
.L68:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L67:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L68
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L69
.L71:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L70
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L70:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L69:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L71
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L71
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L72
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+64
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L72:
	ldr	r3, .L86+72
	ldr	r3, [r3]
	add	r3, r3, #8
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #2
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	str	r3, [r4]
	b	.L73
.L74:
	ldr	r3, [fp, #-88]
	add	r3, r3, #1
	str	r3, [fp, #-88]
.L73:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	bne	.L74
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L75
.L77:
	ldr	r3, [fp, #-76]
	cmp	r3, #31
	ble	.L76
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-88]
	ldr	r1, .L86+32
	mov	r0, r3
	bl	fprintf
	mov	r0, #1
	bl	exit
.L76:
	ldr	r2, [fp, #-88]
	add	r3, r2, #1
	str	r3, [fp, #-88]
	ldr	r3, [fp, #-76]
	add	r1, r3, #1
	str	r1, [fp, #-76]
	ldrb	r2, [r2]	@ zero_extendqisi2
	sub	r1, fp, #12
	add	r3, r1, r3
	strb	r2, [r3, #-36]
.L75:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #2048
	cmp	r3, #0
	bne	.L77
	ldr	r3, [fp, #-88]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #45
	beq	.L77
	sub	r2, fp, #48
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	sub	r3, fp, #48
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L78
	ldr	r3, .L86+76
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	ldr	r1, .L86+68
	mov	r0, r3
	bl	fprintf
	mvn	r3, #0
	b	.L84
.L78:
	ldr	r3, .L86+72
	ldr	r3, [r3]
	add	r3, r3, #12
	ldr	r2, [r3]
	ldr	r3, [fp, #-96]
	lsl	r3, r3, #2
	add	r4, r2, r3
	sub	r3, fp, #48
	mov	r0, r3
	bl	atoi
	mov	r3, r0
	str	r3, [r4]
	ldr	r3, [fp, #-80]
	sub	r3, r3, #1
	ldr	r2, [fp, #-96]
	cmp	r2, r3
	bne	.L79
	mov	r3, #0
	str	r3, [fp, #-60]
	b	.L80
.L87:
	.align	2
.L86:
	.word	.LC15
	.word	.LC0
	.word	matLen
	.word	.LC1
	.word	options
	.word	.LC2
	.word	.LC3
	.word	.LC4
	.word	.LC5
	.word	.LC6
	.word	lpm
	.word	.LC7
	.word	.LC8
	.word	.LC9
	.word	.LC11
	.word	.LC12
	.word	.LC13
	.word	.LC14
	.word	pwm
	.word	stderr
	.word	.LC10
	.word	.LC15
.L82:
	ldr	r3, .L86+72
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r0, [r3]
	ldr	r3, [fp, #-80]
	lsl	r1, r3, #3
	ldr	r3, .L86+72
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #2
	add	r4, r2, r3
	bl	realloc
	mov	r3, r0
	str	r3, [r4]
	ldr	r3, .L86+72
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L81
	ldr	r3, .L86+76
	ldr	r3, [r3]
	mov	r2, #14
	mov	r1, #1
	ldr	r0, .L86+80
	bl	fwrite
	mov	r3, #1
	b	.L84
.L81:
	ldr	r3, [fp, #-60]
	add	r3, r3, #1
	str	r3, [fp, #-60]
.L80:
	ldr	r3, [fp, #-60]
	cmp	r3, #4
	ble	.L82
	ldr	r3, [fp, #-80]
	lsl	r3, r3, #1
	str	r3, [fp, #-80]
.L79:
	ldr	r3, [fp, #-96]
	add	r3, r3, #1
	str	r3, [fp, #-96]
.L46:
	ldr	r3, [fp, #-84]
	ldr	r2, [fp, #-56]
	mov	r1, r3
	ldr	r0, [fp, #-92]
	bl	fgets
	str	r0, [fp, #-52]
	ldr	r3, [fp, #-52]
	cmp	r3, #0
	bne	.L83
.L45:
	ldr	r0, [fp, #-56]
	bl	fclose
	ldr	r3, [fp, #-96]
.L84:
	ldr	r2, .L86+84
	ldr	r1, [r2]
	ldr	r2, [fp, #-16]
	eors	r1, r2, r1
	mov	r2, #0
	beq	.L85
	bl	__stack_chk_fail
.L85:
	mov	r0, r3
	sub	sp, fp, #12
	@ sp needed
	pop	{r4, r5, fp, pc}
	.size	read_profile, .-read_profile
	.section	.rodata
	.align	2
.LC16:
	.ascii	">SEQ:  \000"
	.align	2
.LC17:
	.ascii	"%d\000"
	.align	2
.LC18:
	.ascii	"nucl_cnt[%d] = %d ; seq LEN = %d\012\000"
	.global	__aeabi_i2d
	.global	__aeabi_ddiv
	.global	__aeabi_dadd
	.global	__aeabi_dsub
	.align	2
.LC19:
	.ascii	"Background nucleotide frequencies: \000"
	.align	2
.LC20:
	.ascii	"bg[%i] = %f \000"
	.align	2
.LC21:
	.ascii	"\012\012\000"
	.global	__aeabi_dmul
	.global	__aeabi_dcmpgt
	.global	__aeabi_dcmpeq
	.align	2
.LC22:
	.ascii	",%d\000"
	.align	2
.LC23:
	.ascii	"%s\011%e\011%d\011%s\011%c\012\000"
	.align	2
.LC24:
	.ascii	"%g\011%d\011%s\011%c\012\000"
	.align	2
.LC25:
	.ascii	"%s\011%g\011%d\011%s\011%c\012\000"
	.align	2
.LC26:
	.ascii	"%s\011%e\012\000"
	.align	2
.LC27:
	.ascii	"%g\012\000"
	.align	2
.LC28:
	.ascii	"%s\011%g\012\000"
	.align	2
.LC29:
	.word	__stack_chk_guard
	.text
	.align	2
	.syntax unified
	.arm
	.fpu softvfp
	.type	process_seq_lpm, %function
process_seq_lpm:
	@ args = 0, pretend = 0, frame = 392
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, fp, lr}
	add	fp, sp, #12
	sub	sp, sp, #416
	str	r0, [fp, #-400]
	str	r1, [fp, #-404]
	ldr	r3, .L151
	ldr	r3, [r3]
	str	r3, [fp, #-16]
	mov	r3,#0
	sub	r3, fp, #308
	mov	r2, #0
	str	r2, [r3]
	str	r2, [r3, #4]
	str	r2, [r3, #8]
	str	r2, [r3, #12]
	str	r2, [r3, #16]
	ldr	r3, .L151+4
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L89
	ldr	r3, .L151+8
	ldr	r3, [r3]
	mov	r2, #7
	mov	r1, #1
	ldr	r0, .L151+12
	bl	fwrite
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L90
.L91:
	ldr	r3, .L151+8
	ldr	r0, [r3]
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r3, [fp, #-388]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L151+16
	bl	fprintf
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L90:
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	ldr	r2, [fp, #-388]
	cmp	r2, r3
	blt	.L91
	ldr	r3, .L151+8
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
.L89:
	ldr	r3, .L151+4
	ldr	r3, [r3, #20]
	cmp	r3, #0
	beq	.L92
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L93
.L94:
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r3, [fp, #-388]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	lsl	r3, r2, #2
	sub	r1, fp, #12
	add	r3, r1, r3
	ldr	r3, [r3, #-296]
	add	r1, r3, #1
	lsl	r3, r2, #2
	sub	r2, fp, #12
	add	r3, r2, r3
	str	r1, [r3, #-296]
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L93:
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	ldr	r2, [fp, #-388]
	cmp	r2, r3
	blt	.L94
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	beq	.L95
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L96
.L98:
	ldr	r3, .L151+4
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L97
	ldr	r3, .L151+8
	ldr	r0, [r3]
	ldr	r3, [fp, #-388]
	lsl	r3, r3, #2
	sub	r2, fp, #12
	add	r3, r2, r3
	ldr	r2, [r3, #-296]
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	str	r3, [sp]
	mov	r3, r2
	ldr	r2, [fp, #-388]
	ldr	r1, .L151+20
	bl	fprintf
.L97:
	ldr	r3, [fp, #-388]
	lsl	r3, r3, #2
	sub	r2, fp, #12
	add	r3, r2, r3
	ldr	r3, [r3, #-296]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r4, r0
	mov	r5, r1
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	ldr	r0, .L151+24
	ldr	r1, [fp, #-388]
	lsl	r1, r1, #3
	add	r1, r0, r1
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L96:
	ldr	r3, [fp, #-388]
	cmp	r3, #3
	ble	.L98
	b	.L99
.L95:
	ldr	r2, [fp, #-308]
	ldr	r3, [fp, #-296]
	add	r3, r2, r3
	lsr	r2, r3, #31
	add	r3, r2, r3
	asr	r3, r3, #1
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r4, r0
	mov	r5, r1
	ldr	r3, [fp, #-292]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, #0
	ldr	r3, .L151+28
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	mov	r5, r3
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	mov	r0, r3
	bl	__aeabi_i2d
	mov	r2, r0
	mov	r3, r1
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-316]
	str	r3, [fp, #-312]
	ldr	r1, .L151+24
	sub	r3, fp, #316
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	sub	r3, fp, #316
	ldmia	r3, {r2-r3}
	mov	r0, #0
	ldr	r1, .L151+32
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L151+24
	str	r2, [r1, #8]
	str	r3, [r1, #12]
	sub	r3, fp, #316
	ldmia	r3, {r2-r3}
	mov	r0, #0
	ldr	r1, .L151+32
	bl	__aeabi_dsub
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L151+24
	str	r2, [r1, #16]
	str	r3, [r1, #20]
	ldr	r1, .L151+24
	sub	r3, fp, #316
	ldmia	r3, {r2-r3}
	str	r2, [r1, #24]
	str	r3, [r1, #28]
.L99:
	ldr	r3, .L151+4
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L92
	ldr	r3, .L151+8
	ldr	r3, [r3]
	mov	r2, #35
	mov	r1, #1
	ldr	r0, .L151+36
	bl	fwrite
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L100
.L101:
	ldr	r3, .L151+8
	ldr	r0, [r3]
	ldr	r2, .L151+24
	ldr	r3, [fp, #-388]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	ldr	r2, [fp, #-388]
	ldr	r1, .L151+40
	bl	fprintf
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L100:
	ldr	r3, [fp, #-388]
	cmp	r3, #4
	ble	.L101
	ldr	r3, .L151+8
	ldr	r3, [r3]
	mov	r2, #2
	mov	r1, #1
	ldr	r0, .L151+44
	bl	fwrite
.L92:
	ldr	r3, .L151+4
	ldr	r3, [r3, #32]
	cmp	r3, #0
	beq	.L102
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-372]
	str	r3, [fp, #-368]
	mov	r3, #48
	str	r3, [fp, #-272]
	sub	r3, fp, #268
	mov	r2, #252
	mov	r1, #0
	mov	r0, r3
	bl	memset
	mov	r3, #43
	strb	r3, [fp, #-389]
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L103
.L123:
	mov	r2, #0
	ldr	r3, .L151+48
	str	r2, [fp, #-364]
	str	r3, [fp, #-360]
	mov	r2, #0
	ldr	r3, .L151+48
	str	r2, [fp, #-356]
	str	r3, [fp, #-352]
	mov	r3, #0
	str	r3, [fp, #-384]
	b	.L104
.L108:
	ldr	r3, .L151+52
	ldr	r2, [r3]
	ldr	r3, [fp, #-400]
	ldr	r1, [r3, #4]
	ldr	r0, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r0, r3
	lsl	r3, r3, #2
	add	r3, r1, r3
	ldr	r3, [r3]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-384]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	sub	r3, fp, #364
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	mov	r5, r3
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r2, .L151+24
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-364]
	str	r3, [fp, #-360]
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	bne	.L105
	mov	r3, #0
	str	r3, [fp, #-380]
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #4
	bne	.L106
	mov	r3, #4
	str	r3, [fp, #-380]
	b	.L107
.L106:
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	rsb	r3, r3, #3
	str	r3, [fp, #-380]
.L107:
	ldr	r3, .L151+52
	ldr	r2, [r3]
	ldr	r3, [fp, #-380]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, .L151+56
	ldr	r1, [r3]
	ldr	r3, [fp, #-384]
	sub	r3, r1, r3
	sub	r3, r3, #-536870911
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	sub	r3, fp, #356
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	ldr	r2, .L151+24
	ldr	r3, [fp, #-380]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-356]
	str	r3, [fp, #-352]
.L105:
	ldr	r3, [fp, #-384]
	add	r3, r3, #1
	str	r3, [fp, #-384]
.L104:
	ldr	r3, .L151+56
	ldr	r3, [r3]
	ldr	r2, [fp, #-384]
	cmp	r2, r3
	blt	.L108
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-348]
	str	r3, [fp, #-344]
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	beq	.L109
	sub	r3, fp, #364
	ldmia	r3, {r2-r3}
	str	r2, [fp, #-348]
	str	r3, [fp, #-344]
	b	.L110
.L109:
	sub	r3, fp, #356
	ldmia	r3, {r2-r3}
	sub	r1, fp, #364
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpgt
	mov	r3, r0
	cmp	r3, #0
	beq	.L146
	sub	r3, fp, #364
	ldmia	r3, {r2-r3}
	b	.L113
.L146:
	sub	r3, fp, #356
	ldmia	r3, {r2-r3}
.L113:
	str	r2, [fp, #-348]
	str	r3, [fp, #-344]
.L110:
	sub	r3, fp, #372
	ldmia	r3, {r2-r3}
	sub	r1, fp, #348
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpgt
	mov	r3, r0
	cmp	r3, #0
	beq	.L147
	sub	r3, fp, #348
	ldmia	r3, {r2-r3}
	str	r2, [fp, #-372]
	str	r3, [fp, #-368]
	sub	r3, fp, #272
	ldr	r2, [fp, #-388]
	ldr	r1, .L151+16
	mov	r0, r3
	bl	sprintf
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	bne	.L116
	sub	r3, fp, #364
	ldmia	r3, {r2-r3}
	sub	r1, fp, #348
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	beq	.L148
	mov	r3, #43
	strb	r3, [fp, #-389]
	b	.L116
.L148:
	mov	r3, #45
	strb	r3, [fp, #-389]
	ldr	r3, .L151+56
	ldr	r2, [r3]
	ldr	r3, [fp, #-388]
	add	r2, r2, r3
	sub	r3, fp, #272
	ldr	r1, .L151+16
	mov	r0, r3
	bl	sprintf
	b	.L116
.L147:
	sub	r3, fp, #372
	ldmia	r3, {r2-r3}
	sub	r1, fp, #348
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	beq	.L116
	mov	r2, #0
	mov	r3, #0
	sub	r1, fp, #348
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	bne	.L116
	sub	r3, fp, #364
	ldmia	r3, {r2-r3}
	sub	r1, fp, #348
	ldmia	r1, {r0-r1}
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	beq	.L149
	sub	r3, fp, #288
	ldr	r2, [fp, #-388]
	ldr	r1, .L151+60
	mov	r0, r3
	bl	sprintf
	sub	r2, fp, #288
	sub	r3, fp, #272
	mov	r1, r2
	mov	r0, r3
	bl	strcat
	b	.L116
.L149:
	ldr	r3, .L151+56
	ldr	r2, [r3]
	ldr	r3, [fp, #-388]
	add	r2, r2, r3
	sub	r3, fp, #288
	ldr	r1, .L151+60
	mov	r0, r3
	bl	sprintf
	sub	r2, fp, #288
	sub	r3, fp, #272
	mov	r1, r2
	mov	r0, r3
	bl	strcat
.L116:
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L103:
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #8]
	ldr	r3, .L151+56
	ldr	r3, [r3]
	sub	r3, r2, r3
	ldr	r2, [fp, #-388]
	cmp	r2, r3
	ble	.L123
	ldr	r3, .L151+4
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L124
	ldr	r3, .L151+8
	ldr	r0, [r3]
	ldr	r3, [fp, #-400]
	ldr	r1, [r3]
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	ldrb	r2, [fp, #-389]	@ zero_extendqisi2
	str	r2, [sp, #16]
	sub	r2, fp, #272
	str	r2, [sp, #12]
	str	r3, [sp, #8]
	sub	r3, fp, #372
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	mov	r2, r1
	ldr	r1, .L151+64
	bl	fprintf
.L124:
	ldr	r3, .L151+4
	ldr	r3, [r3, #28]
	cmp	r3, #0
	beq	.L125
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	ldrb	r2, [fp, #-389]	@ zero_extendqisi2
	str	r2, [sp, #8]
	sub	r2, fp, #272
	str	r2, [sp, #4]
	str	r3, [sp]
	sub	r3, fp, #372
	ldmia	r3, {r2-r3}
	ldr	r1, .L151+68
	ldr	r0, [fp, #-404]
	bl	fprintf
	b	.L150
.L125:
	ldr	r3, [fp, #-400]
	ldr	r1, [r3]
	ldr	r3, [fp, #-400]
	ldr	r3, [r3, #8]
	ldrb	r2, [fp, #-389]	@ zero_extendqisi2
	str	r2, [sp, #16]
	sub	r2, fp, #272
	str	r2, [sp, #12]
	str	r3, [sp, #8]
	sub	r3, fp, #372
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	mov	r2, r1
	ldr	r1, .L151+72
	ldr	r0, [fp, #-404]
	bl	fprintf
	b	.L150
.L102:
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-340]
	str	r3, [fp, #-336]
	mov	r3, #0
	str	r3, [fp, #-388]
	b	.L128
.L136:
	mov	r2, #0
	ldr	r3, .L151+48
	str	r2, [fp, #-332]
	str	r3, [fp, #-328]
	mov	r2, #0
	ldr	r3, .L151+48
	str	r2, [fp, #-324]
	str	r3, [fp, #-320]
	mov	r3, #0
	str	r3, [fp, #-384]
	b	.L129
.L133:
	ldr	r3, .L151+52
	ldr	r2, [r3]
	ldr	r3, [fp, #-400]
	ldr	r1, [r3, #4]
	ldr	r0, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r0, r3
	lsl	r3, r3, #2
	add	r3, r1, r3
	ldr	r3, [r3]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-384]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	sub	r3, fp, #332
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r4, r2
	mov	r5, r3
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r2, .L151+24
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	mov	r0, r4
	mov	r1, r5
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-332]
	str	r3, [fp, #-328]
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	bne	.L130
	mov	r3, #0
	str	r3, [fp, #-376]
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #4
	bne	.L131
	mov	r3, #4
	str	r3, [fp, #-376]
	b	.L132
.L131:
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-388]
	ldr	r3, [fp, #-384]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	rsb	r3, r3, #3
	str	r3, [fp, #-376]
.L132:
	ldr	r3, .L151+52
	ldr	r2, [r3]
	ldr	r3, [fp, #-376]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, .L151+56
	ldr	r1, [r3]
	ldr	r3, [fp, #-384]
	sub	r3, r1, r3
	sub	r3, r3, #-536870911
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	sub	r3, fp, #324
	ldmia	r3, {r2-r3}
	bl	__aeabi_dmul
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	ldr	r2, .L151+24
	ldr	r3, [fp, #-376]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-324]
	str	r3, [fp, #-320]
.L130:
	ldr	r3, [fp, #-384]
	add	r3, r3, #1
	str	r3, [fp, #-384]
.L129:
	ldr	r3, .L151+56
	ldr	r3, [r3]
	ldr	r2, [fp, #-384]
	cmp	r2, r3
	blt	.L133
	ldr	r3, .L151+4
	ldr	r3, [r3, #36]
	cmp	r3, #0
	beq	.L134
	sub	r3, fp, #332
	ldmia	r3, {r2-r3}
	sub	r1, fp, #340
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-340]
	str	r3, [fp, #-336]
	b	.L135
.L134:
	sub	r3, fp, #332
	ldmia	r3, {r2-r3}
	sub	r1, fp, #340
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #324
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-340]
	str	r3, [fp, #-336]
.L135:
	ldr	r3, [fp, #-388]
	add	r3, r3, #1
	str	r3, [fp, #-388]
.L128:
	ldr	r3, [fp, #-400]
	ldr	r2, [r3, #8]
	ldr	r3, .L151+56
	ldr	r3, [r3]
	sub	r3, r2, r3
	ldr	r2, [fp, #-388]
	cmp	r2, r3
	ble	.L136
	ldr	r3, .L151+4
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L137
	ldr	r3, .L151+8
	ldr	r0, [r3]
	ldr	r3, [fp, #-400]
	ldr	r1, [r3]
	sub	r3, fp, #340
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	mov	r2, r1
	ldr	r1, .L151+76
	bl	fprintf
.L137:
	ldr	r3, .L151+4
	ldr	r3, [r3, #28]
	cmp	r3, #0
	beq	.L138
	sub	r3, fp, #340
	ldmia	r3, {r2-r3}
	ldr	r1, .L151+80
	ldr	r0, [fp, #-404]
	bl	fprintf
	b	.L150
.L138:
	ldr	r3, [fp, #-400]
	ldr	r1, [r3]
	sub	r3, fp, #340
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	mov	r2, r1
	ldr	r1, .L151+84
	ldr	r0, [fp, #-404]
	bl	fprintf
.L150:
	nop
	ldr	r3, .L151
	ldr	r2, [r3]
	ldr	r3, [fp, #-16]
	eors	r2, r3, r2
	mov	r3, #0
	beq	.L139
	bl	__stack_chk_fail
.L139:
	sub	sp, fp, #12
	@ sp needed
	pop	{r4, r5, fp, pc}
.L152:
	.align	2
.L151:
	.word	.LC29
	.word	options
	.word	stderr
	.word	.LC16
	.word	.LC17
	.word	.LC18
	.word	bg
	.word	1074790400
	.word	1071644672
	.word	.LC19
	.word	.LC20
	.word	.LC21
	.word	1072693248
	.word	lpm
	.word	matLen
	.word	.LC22
	.word	.LC23
	.word	.LC24
	.word	.LC25
	.word	.LC26
	.word	.LC27
	.word	.LC28
	.size	process_seq_lpm, .-process_seq_lpm
	.section	.rodata
	.align	2
.LC30:
	.ascii	"> \000"
	.align	2
.LC31:
	.ascii	"%d\011%d\011%s\011%d\011%c\012\000"
	.align	2
.LC32:
	.ascii	"NOTAG\000"
	.align	2
.LC33:
	.ascii	"%s\011%d\011%d\011%s\011%d\011%c\012\000"
	.text
	.align	2
	.syntax unified
	.arm
	.fpu softvfp
	.type	process_seq_pwm, %function
process_seq_pwm:
	@ args = 0, pretend = 0, frame = 72
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{fp, lr}
	add	fp, sp, #4
	sub	sp, sp, #88
	str	r0, [fp, #-72]
	str	r1, [fp, #-76]
	mov	r3, #0
	str	r3, [fp, #-24]
	mov	r3, #0
	str	r3, [fp, #-20]
	mov	r3, #0
	str	r3, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-56]
	mov	r3, #0
	str	r3, [fp, #-52]
	mov	r3, #-2147483648
	str	r3, [fp, #-48]
	mov	r3, #0
	str	r3, [fp, #-44]
	mov	r3, #0
	str	r3, [fp, #-40]
	ldr	r3, .L177
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L154
	ldr	r3, .L177+4
	ldr	r3, [r3]
	mov	r2, #2
	mov	r1, #1
	ldr	r0, .L177+8
	bl	fwrite
	mov	r3, #0
	str	r3, [fp, #-64]
	b	.L155
.L156:
	ldr	r3, .L177+4
	ldr	r0, [r3]
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #4]
	ldr	r3, [fp, #-64]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L177+12
	bl	fprintf
	ldr	r3, [fp, #-64]
	add	r3, r3, #1
	str	r3, [fp, #-64]
.L155:
	ldr	r3, [fp, #-72]
	ldr	r3, [r3, #8]
	ldr	r2, [fp, #-64]
	cmp	r2, r3
	blt	.L156
	ldr	r3, .L177+4
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
.L154:
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #8]
	ldr	r3, .L177+16
	ldr	r3, [r3]
	cmp	r2, r3
	bge	.L157
	ldr	r3, .L177
	ldr	r3, [r3, #28]
	cmp	r3, #0
	beq	.L158
	mov	r3, #48
	str	r3, [sp, #8]
	mov	r3, #-2147483648
	str	r3, [sp, #4]
	ldr	r3, .L177+20
	str	r3, [sp]
	mov	r3, #0
	mov	r2, #0
	ldr	r1, .L177+24
	ldr	r0, [fp, #-76]
	bl	fprintf
	b	.L153
.L158:
	ldr	r3, [fp, #-72]
	ldr	r2, [r3]
	mov	r3, #48
	str	r3, [sp, #12]
	mov	r3, #-2147483648
	str	r3, [sp, #8]
	ldr	r3, .L177+20
	str	r3, [sp, #4]
	mov	r3, #0
	str	r3, [sp]
	mov	r3, #0
	ldr	r1, .L177+28
	ldr	r0, [fp, #-76]
	bl	fprintf
	b	.L153
.L157:
	ldr	r3, .L177+16
	ldr	r3, [r3]
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-24]
	ldr	r3, .L177+16
	ldr	r3, [r3]
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-20]
	ldr	r3, .L177+16
	ldr	r3, [r3]
	add	r3, r3, #1
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-16]
	mov	r3, #0
	str	r3, [fp, #-36]
	mov	r3, #0
	str	r3, [fp, #-64]
	b	.L161
.L171:
	mov	r3, #0
	str	r3, [fp, #-56]
	mov	r3, #0
	str	r3, [fp, #-52]
	mov	r3, #0
	str	r3, [fp, #-60]
	b	.L162
.L166:
	ldr	r3, .L177+32
	ldr	r2, [r3]
	ldr	r3, [fp, #-72]
	ldr	r1, [r3, #4]
	ldr	r0, [fp, #-64]
	ldr	r3, [fp, #-60]
	add	r3, r0, r3
	lsl	r3, r3, #2
	add	r3, r1, r3
	ldr	r3, [r3]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r2, [fp, #-56]
	add	r3, r2, r3
	str	r3, [fp, #-56]
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-64]
	ldr	r3, [fp, #-60]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	ldr	r1, [fp, #-20]
	add	r3, r1, r3
	ldr	r1, .L177+36
	ldrb	r2, [r1, r2]	@ zero_extendqisi2
	strb	r2, [r3]
	ldr	r3, .L177
	ldr	r3, [r3, #36]
	cmp	r3, #0
	bne	.L163
	mov	r3, #0
	str	r3, [fp, #-36]
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-64]
	ldr	r3, [fp, #-60]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #4
	bne	.L164
	mov	r3, #4
	str	r3, [fp, #-36]
	b	.L165
.L164:
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #4]
	ldr	r1, [fp, #-64]
	ldr	r3, [fp, #-60]
	add	r3, r1, r3
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	rsb	r3, r3, #3
	str	r3, [fp, #-36]
.L165:
	ldr	r3, .L177+32
	ldr	r2, [r3]
	ldr	r3, [fp, #-36]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, .L177+16
	ldr	r1, [r3]
	ldr	r3, [fp, #-60]
	sub	r3, r1, r3
	sub	r3, r3, #-1073741823
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r2, [fp, #-52]
	add	r3, r2, r3
	str	r3, [fp, #-52]
	ldr	r3, .L177+16
	ldr	r2, [r3]
	ldr	r3, [fp, #-60]
	sub	r3, r2, r3
	sub	r3, r3, #1
	ldr	r2, [fp, #-16]
	add	r3, r2, r3
	ldr	r1, .L177+36
	ldr	r2, [fp, #-36]
	add	r2, r1, r2
	ldrb	r2, [r2]	@ zero_extendqisi2
	strb	r2, [r3]
.L163:
	ldr	r3, [fp, #-60]
	add	r3, r3, #1
	str	r3, [fp, #-60]
.L162:
	ldr	r3, .L177+16
	ldr	r3, [r3]
	ldr	r2, [fp, #-60]
	cmp	r2, r3
	blt	.L166
	ldr	r3, [fp, #-60]
	ldr	r2, [fp, #-20]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	ldr	r3, [fp, #-60]
	ldr	r2, [fp, #-16]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
	mov	r3, #0
	str	r3, [fp, #-32]
	mov	r3, #0
	str	r3, [fp, #-28]
	ldr	r3, .L177
	ldr	r3, [r3, #36]
	cmp	r3, #0
	beq	.L167
	ldr	r3, [fp, #-56]
	str	r3, [fp, #-32]
	b	.L168
.L167:
	ldr	r2, [fp, #-56]
	ldr	r3, [fp, #-52]
	sub	r3, r2, r3
	str	r3, [fp, #-8]
	ldr	r3, [fp, #-8]
	lsr	r3, r3, #31
	str	r3, [fp, #-28]
	ldr	r3, [fp, #-28]
	ldr	r2, [fp, #-8]
	mul	r3, r2, r3
	ldr	r2, [fp, #-56]
	sub	r3, r2, r3
	str	r3, [fp, #-32]
.L168:
	ldr	r2, [fp, #-32]
	ldr	r3, [fp, #-48]
	cmp	r2, r3
	ble	.L169
	ldr	r3, [fp, #-32]
	str	r3, [fp, #-48]
	ldr	r3, [fp, #-64]
	str	r3, [fp, #-44]
	ldr	r3, [fp, #-28]
	str	r3, [fp, #-40]
	ldr	r3, [fp, #-28]
	cmp	r3, #0
	beq	.L170
	ldr	r1, [fp, #-16]
	ldr	r0, [fp, #-24]
	bl	strcpy
	b	.L169
.L170:
	ldr	r1, [fp, #-20]
	ldr	r0, [fp, #-24]
	bl	strcpy
.L169:
	ldr	r3, [fp, #-64]
	add	r3, r3, #1
	str	r3, [fp, #-64]
.L161:
	ldr	r3, [fp, #-72]
	ldr	r2, [r3, #8]
	ldr	r3, .L177+16
	ldr	r3, [r3]
	sub	r3, r2, r3
	ldr	r2, [fp, #-64]
	cmp	r2, r3
	ble	.L171
	ldr	r3, [fp, #-40]
	cmp	r3, #0
	beq	.L172
	mov	r3, #45
	strb	r3, [fp, #-65]
	b	.L173
.L172:
	mov	r3, #43
	strb	r3, [fp, #-65]
.L173:
	ldr	r3, .L177+16
	ldr	r3, [r3]
	ldr	r2, [fp, #-44]
	add	r3, r2, r3
	str	r3, [fp, #-12]
	ldr	r3, .L177
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L174
	ldr	r3, .L177+4
	ldr	r0, [r3]
	ldr	r3, [fp, #-72]
	ldr	r2, [r3]
	ldrb	r3, [fp, #-65]	@ zero_extendqisi2
	str	r3, [sp, #12]
	ldr	r3, [fp, #-48]
	str	r3, [sp, #8]
	ldr	r3, [fp, #-24]
	str	r3, [sp, #4]
	ldr	r3, [fp, #-12]
	str	r3, [sp]
	ldr	r3, [fp, #-44]
	ldr	r1, .L177+28
	bl	fprintf
.L174:
	ldr	r3, .L177
	ldr	r3, [r3, #28]
	cmp	r3, #0
	beq	.L175
	ldrb	r3, [fp, #-65]	@ zero_extendqisi2
	str	r3, [sp, #8]
	ldr	r3, [fp, #-48]
	str	r3, [sp, #4]
	ldr	r3, [fp, #-24]
	str	r3, [sp]
	ldr	r3, [fp, #-12]
	ldr	r2, [fp, #-44]
	ldr	r1, .L177+24
	ldr	r0, [fp, #-76]
	bl	fprintf
	b	.L176
.L175:
	ldr	r3, [fp, #-72]
	ldr	r2, [r3]
	ldrb	r3, [fp, #-65]	@ zero_extendqisi2
	str	r3, [sp, #12]
	ldr	r3, [fp, #-48]
	str	r3, [sp, #8]
	ldr	r3, [fp, #-24]
	str	r3, [sp, #4]
	ldr	r3, [fp, #-12]
	str	r3, [sp]
	ldr	r3, [fp, #-44]
	ldr	r1, .L177+28
	ldr	r0, [fp, #-76]
	bl	fprintf
.L176:
	ldr	r0, [fp, #-24]
	bl	free
	ldr	r0, [fp, #-20]
	bl	free
	ldr	r0, [fp, #-16]
	bl	free
.L153:
	sub	sp, fp, #4
	@ sp needed
	pop	{fp, pc}
.L178:
	.align	2
.L177:
	.word	options
	.word	stderr
	.word	.LC30
	.word	.LC17
	.word	matLen
	.word	.LC32
	.word	.LC31
	.word	.LC33
	.word	pwm
	.word	nucleotide
	.size	process_seq_pwm, .-process_seq_pwm
	.section	.rodata
	.align	2
.LC34:
	.ascii	"Could not find a sequence in file %s\012\000"
	.align	2
.LC35:
	.ascii	"Fasta Header too long \"%s\" in file %s\012\000"
	.align	2
.LC36:
	.word	__stack_chk_guard
	.text
	.align	2
	.syntax unified
	.arm
	.fpu softvfp
	.type	process_file, %function
process_file:
	@ args = 0, pretend = 0, frame = 3136
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, fp, lr}
	add	fp, sp, #12
	sub	sp, sp, #3136
	sub	sp, sp, #8
	str	r0, [fp, #-3136]
	str	r1, [fp, #-3140]
	str	r2, [fp, #-3144]
	ldr	r3, .L215
	ldr	r3, [r3]
	str	r3, [fp, #-16]
	mov	r3,#0
	ldr	r3, [fp, #-3136]
	cmp	r3, #0
	bne	.L180
	ldr	r1, .L215+4
	ldr	r0, [fp, #-3140]
	bl	fopen
	str	r0, [fp, #-3104]
	ldr	r3, [fp, #-3104]
	cmp	r3, #0
	bne	.L181
	ldr	r3, .L215+8
	ldr	r4, [r3]
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r0, r3
	bl	strerror
	mov	r5, r0
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	str	r3, [sp]
	mov	r3, r5
	ldr	r2, [fp, #-3140]
	ldr	r1, .L215+12
	mov	r0, r4
	bl	fprintf
	mvn	r3, #0
	b	.L212
.L181:
	ldr	r3, [fp, #-3104]
	str	r3, [fp, #-3136]
.L180:
	ldr	r3, .L215+16
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L214
	ldr	r3, .L215+8
	ldr	r3, [r3]
	ldr	r2, [fp, #-3140]
	ldr	r1, .L215+20
	mov	r0, r3
	bl	fprintf
.L214:
	nop
.L185:
	sub	r3, fp, #3072
	sub	r3, r3, #12
	sub	r3, r3, #4
	ldr	r2, [fp, #-3136]
	mov	r1, #3072
	mov	r0, r3
	bl	fgets
	str	r0, [fp, #-3124]
	ldr	r3, [fp, #-3124]
	cmp	r3, #0
	beq	.L184
	ldrb	r3, [fp, #-3088]	@ zero_extendqisi2
	cmp	r3, #62
	bne	.L185
.L184:
	ldr	r3, [fp, #-3124]
	cmp	r3, #0
	beq	.L186
	ldrb	r3, [fp, #-3088]	@ zero_extendqisi2
	cmp	r3, #62
	beq	.L187
.L186:
	ldr	r3, .L215+8
	ldr	r3, [r3]
	ldr	r2, [fp, #-3140]
	ldr	r1, .L215+24
	mov	r0, r3
	bl	fprintf
	ldr	r3, .L215+28
	ldr	r3, [r3]
	ldr	r2, [fp, #-3136]
	cmp	r2, r3
	beq	.L188
	ldr	r0, [fp, #-3136]
	bl	fclose
.L188:
	mvn	r3, #0
	b	.L212
.L187:
	mov	r0, #132
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-3100]
	mov	r0, #12288
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-3096]
	mov	r3, #3072
	str	r3, [fp, #-3120]
	b	.L189
.L210:
	sub	r3, fp, #3072
	sub	r3, r3, #12
	sub	r3, r3, #4
	str	r3, [fp, #-3116]
	ldr	r3, [fp, #-3116]
	add	r3, r3, #1
	str	r3, [fp, #-3116]
	mov	r3, #0
	str	r3, [fp, #-3112]
	b	.L190
.L193:
	ldr	r3, [fp, #-3112]
	cmp	r3, #131
	ble	.L191
	ldr	r3, .L215+8
	ldr	r0, [r3]
	ldr	r3, [fp, #-3140]
	ldr	r2, [fp, #-3124]
	ldr	r1, .L215+32
	bl	fprintf
	ldr	r0, [fp, #-3136]
	bl	fclose
	mvn	r3, #0
	b	.L212
.L191:
	ldr	r3, [fp, #-3116]
	add	r2, r3, #1
	str	r2, [fp, #-3116]
	ldr	r1, [fp, #-3100]
	ldr	r2, [fp, #-3112]
	add	r0, r2, #1
	str	r0, [fp, #-3112]
	add	r2, r1, r2
	ldrb	r3, [r3]	@ zero_extendqisi2
	strb	r3, [r2]
.L190:
	ldr	r3, [fp, #-3116]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	beq	.L192
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldr	r3, [fp, #-3116]
	ldrb	r3, [r3]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #8192
	cmp	r3, #0
	beq	.L193
.L192:
	ldr	r3, [fp, #-3112]
	cmp	r3, #131
	bgt	.L194
	ldr	r2, [fp, #-3100]
	ldr	r3, [fp, #-3112]
	add	r3, r2, r3
	mov	r2, #0
	strb	r2, [r3]
.L194:
	mov	r3, #0
	str	r3, [fp, #-3092]
	b	.L195
.L208:
	sub	r3, fp, #3072
	sub	r3, r3, #12
	sub	r3, r3, #4
	str	r3, [fp, #-3116]
	b	.L196
.L206:
	bl	__ctype_b_loc
	mov	r3, r0
	ldr	r2, [r3]
	ldrb	r3, [fp, #-3125]	@ zero_extendqisi2
	lsl	r3, r3, #1
	add	r3, r2, r3
	ldrh	r3, [r3]
	and	r3, r3, #1024
	cmp	r3, #0
	beq	.L196
	ldrb	r3, [fp, #-3125]	@ zero_extendqisi2
	mov	r0, r3
	bl	toupper
	mov	r3, r0
	strb	r3, [fp, #-3125]
	ldrb	r3, [fp, #-3125]	@ zero_extendqisi2
	sub	r3, r3, #65
	cmp	r3, #19
	ldrls	pc, [pc, r3, asl #2]
	b	.L197
.L199:
	.word	.L203
	.word	.L197
	.word	.L202
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L201
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L200
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L197
	.word	.L198
.L203:
	mov	r3, #0
	str	r3, [fp, #-3108]
	b	.L204
.L202:
	mov	r3, #1
	str	r3, [fp, #-3108]
	b	.L204
.L201:
	mov	r3, #2
	str	r3, [fp, #-3108]
	b	.L204
.L198:
	mov	r3, #3
	str	r3, [fp, #-3108]
	b	.L204
.L200:
	mov	r3, #4
	str	r3, [fp, #-3108]
	b	.L204
.L197:
	mov	r3, #4
	str	r3, [fp, #-3108]
.L204:
	ldr	r3, [fp, #-3092]
	ldr	r2, [fp, #-3120]
	cmp	r2, r3
	bgt	.L205
	ldr	r3, [fp, #-3120]
	add	r3, r3, #3072
	str	r3, [fp, #-3120]
	ldr	r2, [fp, #-3096]
	ldr	r3, [fp, #-3120]
	lsl	r3, r3, #2
	mov	r1, r3
	mov	r0, r2
	bl	realloc
	mov	r3, r0
	str	r3, [fp, #-3096]
.L205:
	ldr	r2, [fp, #-3096]
	ldr	r3, [fp, #-3092]
	add	r1, r3, #1
	str	r1, [fp, #-3092]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [fp, #-3108]
	str	r2, [r3]
.L196:
	ldr	r3, [fp, #-3116]
	add	r2, r3, #1
	str	r2, [fp, #-3116]
	ldrb	r3, [r3]
	strb	r3, [fp, #-3125]
	ldrb	r3, [fp, #-3125]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L206
.L195:
	sub	r3, fp, #3072
	sub	r3, r3, #12
	sub	r3, r3, #4
	ldr	r2, [fp, #-3136]
	mov	r1, #3072
	mov	r0, r3
	bl	fgets
	str	r0, [fp, #-3124]
	ldr	r3, [fp, #-3124]
	cmp	r3, #0
	beq	.L207
	ldrb	r3, [fp, #-3088]	@ zero_extendqisi2
	cmp	r3, #62
	bne	.L208
.L207:
	ldr	r3, [fp, #-3092]
	cmp	r3, #0
	beq	.L189
	ldr	r3, .L215+16
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L209
	sub	r3, fp, #3088
	sub	r3, r3, #12
	ldr	r1, [fp, #-3144]
	mov	r0, r3
	bl	process_seq_lpm
	b	.L189
.L209:
	sub	r3, fp, #3088
	sub	r3, r3, #12
	ldr	r1, [fp, #-3144]
	mov	r0, r3
	bl	process_seq_pwm
.L189:
	ldr	r3, [fp, #-3124]
	cmp	r3, #0
	bne	.L210
	ldr	r3, [fp, #-3100]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-3096]
	mov	r0, r3
	bl	free
	ldr	r3, .L215+28
	ldr	r3, [r3]
	ldr	r2, [fp, #-3136]
	cmp	r2, r3
	beq	.L211
	ldr	r0, [fp, #-3136]
	bl	fclose
.L211:
	mov	r3, #0
.L212:
	ldr	r2, .L215
	ldr	r1, [r2]
	ldr	r2, [fp, #-16]
	eors	r1, r2, r1
	mov	r2, #0
	beq	.L213
	bl	__stack_chk_fail
.L213:
	mov	r0, r3
	sub	sp, fp, #12
	@ sp needed
	pop	{r4, r5, fp, pc}
.L216:
	.align	2
.L215:
	.word	.LC36
	.word	.LC0
	.word	stderr
	.word	.LC1
	.word	options
	.word	.LC2
	.word	.LC34
	.word	stdin
	.word	.LC35
	.size	process_file, .-process_file
	.section	.rodata
	.align	2
.LC37:
	.ascii	"the_stack_data/594020.c\000"
	.align	2
.LC38:
	.ascii	"idx < count\000"
	.align	2
.LC39:
	.ascii	"idx == count - 1\000"
	.align	2
.LC40:
	.word	__stack_chk_guard
	.text
	.align	2
	.global	str_split
	.syntax unified
	.arm
	.fpu softvfp
	.type	str_split, %function
str_split:
	@ args = 0, pretend = 0, frame = 40
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, fp, lr}
	add	fp, sp, #8
	sub	sp, sp, #44
	str	r0, [fp, #-48]
	mov	r3, r1
	strb	r3, [fp, #-49]
	ldr	r3, .L228
	ldr	r3, [r3]
	str	r3, [fp, #-16]
	mov	r3,#0
	mov	r3, #0
	str	r3, [fp, #-24]
	mov	r3, #0
	str	r3, [fp, #-44]
	ldr	r3, [fp, #-48]
	str	r3, [fp, #-40]
	mov	r3, #0
	str	r3, [fp, #-36]
	ldrb	r3, [fp, #-49]
	strb	r3, [fp, #-20]
	mov	r3, #0
	strb	r3, [fp, #-19]
	b	.L218
.L220:
	ldr	r3, [fp, #-40]
	ldrb	r3, [r3]	@ zero_extendqisi2
	ldrb	r2, [fp, #-49]	@ zero_extendqisi2
	cmp	r2, r3
	bne	.L219
	ldr	r3, [fp, #-44]
	add	r3, r3, #1
	str	r3, [fp, #-44]
	ldr	r3, [fp, #-40]
	str	r3, [fp, #-36]
.L219:
	ldr	r3, [fp, #-40]
	add	r3, r3, #1
	str	r3, [fp, #-40]
.L218:
	ldr	r3, [fp, #-40]
	ldrb	r3, [r3]	@ zero_extendqisi2
	cmp	r3, #0
	bne	.L220
	ldr	r0, [fp, #-48]
	bl	strlen
	mov	r3, r0
	sub	r3, r3, #1
	ldr	r2, [fp, #-48]
	add	r3, r2, r3
	ldr	r2, [fp, #-36]
	cmp	r2, r3
	movcc	r3, #1
	movcs	r3, #0
	and	r3, r3, #255
	mov	r2, r3
	ldr	r3, [fp, #-44]
	add	r3, r3, r2
	str	r3, [fp, #-44]
	ldr	r3, [fp, #-44]
	add	r3, r3, #1
	str	r3, [fp, #-44]
	ldr	r3, [fp, #-44]
	lsl	r3, r3, #2
	mov	r0, r3
	bl	malloc
	mov	r3, r0
	str	r3, [fp, #-24]
	ldr	r3, [fp, #-24]
	cmp	r3, #0
	beq	.L221
	mov	r3, #0
	str	r3, [fp, #-32]
	sub	r3, fp, #20
	mov	r1, r3
	ldr	r0, [fp, #-48]
	bl	strtok
	str	r0, [fp, #-28]
	b	.L222
.L224:
	ldr	r2, [fp, #-32]
	ldr	r3, [fp, #-44]
	cmp	r2, r3
	bcc	.L223
	ldr	r3, .L228+4
	ldr	r2, .L228+8
	ldr	r1, .L228+12
	ldr	r0, .L228+16
	bl	__assert_fail
.L223:
	ldr	r3, [fp, #-32]
	add	r2, r3, #1
	str	r2, [fp, #-32]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-24]
	add	r4, r2, r3
	ldr	r0, [fp, #-28]
	bl	strdup
	mov	r3, r0
	str	r3, [r4]
	sub	r3, fp, #20
	mov	r1, r3
	mov	r0, #0
	bl	strtok
	str	r0, [fp, #-28]
.L222:
	ldr	r3, [fp, #-28]
	cmp	r3, #0
	bne	.L224
	ldr	r3, [fp, #-44]
	sub	r3, r3, #1
	ldr	r2, [fp, #-32]
	cmp	r2, r3
	beq	.L225
	ldr	r3, .L228+4
	ldr	r2, .L228+20
	ldr	r1, .L228+12
	ldr	r0, .L228+24
	bl	__assert_fail
.L225:
	ldr	r3, [fp, #-32]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-24]
	add	r3, r2, r3
	mov	r2, #0
	str	r2, [r3]
.L221:
	ldr	r3, [fp, #-24]
	ldr	r2, .L228
	ldr	r1, [r2]
	ldr	r2, [fp, #-16]
	eors	r1, r2, r1
	mov	r2, #0
	beq	.L227
	bl	__stack_chk_fail
.L227:
	mov	r0, r3
	sub	sp, fp, #8
	@ sp needed
	pop	{r4, fp, pc}
.L229:
	.align	2
.L228:
	.word	.LC40
	.word	__PRETTY_FUNCTION__.9158
	.word	705
	.word	.LC37
	.word	.LC38
	.word	709
	.word	.LC39
	.size	str_split, .-str_split
	.section	.rodata
	.align	2
.LC41:
	.ascii	"bdhfm:p:uqrw:\000"
	.align	2
.LC42:
	.ascii	"?? getopt returned character code 0%o ??\012\000"
	.align	2
.LC43:
	.ascii	"Usage: %s [options] -m <matrix_file> [<] <fasta_fil"
	.ascii	"e>\012   where options are:\012     -b[--best]     "
	.ascii	"        Compute best single match scores\012     -d"
	.ascii	"[--debug]            Produce debugging output\012  "
	.ascii	"   -h[--help]             Show this stuff\012     -"
	.ascii	"f[--forward]          Scan sequences in forward dir"
	.ascii	"ection [def=bidirectional]\012     -u[--unorm]     "
	.ascii	"       Normalize pwm scores by a uniform background"
	.ascii	" base composition (Default=0.25)\012     -p[--prob]"
	.ascii	" <bg freq>   Normalize pwm scores by library-depend"
	.ascii	"ent nucleotide frequencies <bg freq>: 0.29,0.21,0.2"
	.ascii	"1,0.29\012                            Note that nuc"
	.ascii	"leotide frequencies (<bg freq>) MUST BE comma-separ"
	.ascii	"ated\012     -q[--seqnorm]          Normalize pwm s"
	.ascii	"cores by sequence-based nucleotide composition\012 "
	.ascii	"    -r[--nohdr]            Output raw scores (with "
	.ascii	"no FASTA header)\012     --lpm                  Inp"
	.ascii	"ut matrix is a letter probability matrix (LPM) [Def"
	.ascii	"ault]\012     --pwm                  Input matrix i"
	.ascii	"s a position weight matrix (PWM)\012     -w[--pweig"
	.ascii	"ht]          Set a pseudo-weight to re-normalize th"
	.ascii	"e frequencies of the letter-probability matrix (LPM"
	.ascii	")\012                            Recommended value "
	.ascii	"is 0.0001 [Default=0.0]\012\012   Score a set of nu"
	.ascii	"cleotide sequences in FASTA format (<fasta_file>), "
	.ascii	"based on matches to a sequence motif\012   represen"
	.ascii	"ted by an INTEGER position weight matrix [--pwm] or"
	.ascii	" a base probability matrix [--lpm] (<matrix_file>)."
	.ascii	"\012   Note that the background normalization optio"
	.ascii	"ns (-u, -p, -q) are only valid for base probability"
	.ascii	" matrices.\012   For integer PWMs, only the best si"
	.ascii	"ngle match scores are reported, along with the posi"
	.ascii	"tion, strand, and sequence match.\012\012\000"
	.align	2
.LC44:
	.ascii	"Could not allocate matrix array: %s(%d)\012\000"
	.align	2
.LC45:
	.ascii	"Number of TOKENS: %d\012\000"
	.align	2
.LC46:
	.ascii	"Please, specify correct library-dependent nucleotid"
	.ascii	"e frequencies <bg freq>: they MUST BE comma-separat"
	.ascii	"ed!\012\000"
	.align	2
.LC47:
	.ascii	"-\000"
	.align	2
.LC48:
	.ascii	"Unable to open '%s': %s(%d)\012\000"
	.align	2
.LC49:
	.ascii	"Fasta File : %s\012\000"
	.align	2
.LC50:
	.ascii	"Sequence File from STDIN\012\000"
	.align	2
.LC51:
	.ascii	"Motif length: %d\012\000"
	.align	2
.LC52:
	.ascii	"Weight Matrix: \012\012\000"
	.align	2
.LC53:
	.ascii	"%c \000"
	.align	2
.LC54:
	.ascii	" %f \000"
	.align	2
.LC55:
	.ascii	"]\012\000"
	.align	2
.LC56:
	.ascii	" %d \000"
	.align	2
.LC57:
	.ascii	"Weight Matrix: vertical representation (columns rep"
	.ascii	"resent the four nucleotides ACGT)\012\012\000"
	.align	2
.LC58:
	.ascii	"Background nucleotide frequencies:[%s]\012\000"
	.align	2
.LC59:
	.ascii	"bg[%i] = %.2f \000"
	.align	2
.LC60:
	.ascii	"Sequence-based nucleotide composition\012\000"
	.align	2
.LC61:
	.ascii	"Compute best match scores instead of sum of probabi"
	.ascii	"lities\012\000"
	.align	2
.LC62:
	.ascii	"Scanning sequences in forward direction only\012\000"
	.align	2
.LC63:
	.word	__stack_chk_guard
	.text
	.align	2
	.global	main
	.syntax unified
	.arm
	.fpu softvfp
	.type	main, %function
main:
	@ args = 0, pretend = 0, frame = 112
	@ frame_needed = 1, uses_anonymous_args = 0
	push	{r4, r5, r6, fp, lr}
	add	fp, sp, #16
	sub	sp, sp, #124
	str	r0, [fp, #-128]
	str	r1, [fp, #-132]
	ldr	r3, .L328
	ldr	r3, [r3]
	str	r3, [fp, #-24]
	mov	r3,#0
	mov	r3, #0
	str	r3, [fp, #-120]
	mov	r3, #0
	str	r3, [fp, #-116]
	mov	r3, #0
	str	r3, [fp, #-112]
	mov	r2, #0
	ldr	r3, .L328+4
	str	r2, [fp, #-44]
	str	r3, [fp, #-40]
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #16]
	ldr	r3, .L328+8
	mov	r2, #0
	str	r2, [r3, #12]
	mov	r3, #0
	str	r3, [fp, #-124]
.L248:
	sub	r3, fp, #124
	str	r3, [sp]
	ldr	r3, .L328+12
	ldr	r2, .L328+16
	ldr	r1, [fp, #-132]
	ldr	r0, [fp, #-128]
	bl	getopt_long
	str	r0, [fp, #-64]
	ldr	r3, [fp, #-64]
	cmn	r3, #1
	beq	.L326
	ldr	r3, [fp, #-64]
	cmp	r3, #0
	beq	.L233
	ldr	r3, [fp, #-64]
	cmp	r3, #0
	blt	.L234
	ldr	r3, [fp, #-64]
	cmp	r3, #119
	bgt	.L234
	ldr	r3, [fp, #-64]
	cmp	r3, #63
	blt	.L234
	ldr	r3, [fp, #-64]
	sub	r3, r3, #63
	cmp	r3, #56
	ldrls	pc, [pc, r3, asl #2]
	b	.L234
.L236:
	.word	.L327
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L245
	.word	.L234
	.word	.L244
	.word	.L234
	.word	.L243
	.word	.L234
	.word	.L242
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L234
	.word	.L241
	.word	.L234
	.word	.L234
	.word	.L240
	.word	.L239
	.word	.L238
	.word	.L234
	.word	.L234
	.word	.L237
	.word	.L234
	.word	.L235
.L245:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #32]
	b	.L247
.L244:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #4]
	b	.L247
.L242:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3]
	b	.L247
.L243:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #36]
	b	.L247
.L241:
	ldr	r3, .L328+20
	ldr	r3, [r3]
	str	r3, [fp, #-120]
	b	.L247
.L240:
	ldr	r3, .L328+20
	ldr	r3, [r3]
	str	r3, [fp, #-116]
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #24]
	b	.L247
.L239:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #20]
	b	.L247
.L237:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #8]
	b	.L247
.L238:
	ldr	r3, .L328+8
	mov	r2, #1
	str	r2, [r3, #28]
	b	.L247
.L235:
	ldr	r3, .L328+20
	ldr	r3, [r3]
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	ldr	r1, .L328+24
	stm	r1, {r2-r3}
	b	.L247
.L233:
	ldr	r3, [fp, #-124]
	ldr	r2, .L328+12
	lsl	r3, r3, #4
	add	r3, r2, r3
	ldr	r3, [r3, #8]
	cmp	r3, #0
	b	.L327
.L234:
	ldr	r1, [fp, #-64]
	ldr	r0, .L328+28
	bl	printf
	b	.L248
.L327:
	nop
.L247:
	b	.L248
.L326:
	nop
	ldr	r3, .L328+32
	ldr	r3, [r3]
	ldr	r2, [fp, #-128]
	cmp	r2, r3
	blt	.L249
	ldr	r3, [fp, #-120]
	cmp	r3, #0
	bne	.L250
.L249:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r3, [fp, #-132]
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L328+40
	bl	fprintf
	mov	r3, #1
	b	.L322
.L250:
	ldr	r3, .L328+8
	ldr	r3, [r3, #12]
	cmp	r3, #0
	beq	.L252
	ldr	r3, .L328+8
	mov	r2, #0
	str	r2, [r3, #16]
.L252:
	ldr	r3, .L328+8
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L253
	mov	r1, #4
	mov	r0, #5
	bl	calloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, .L328+164
	str	r2, [r3]
	ldr	r3, .L328+164
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L254
	ldr	r3, .L328+36
	ldr	r4, [r3]
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r0, r3
	bl	strerror
	mov	r5, r0
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r2, r5
	ldr	r1, .L328+44
	mov	r0, r4
	bl	fprintf
	mov	r3, #1
	b	.L322
.L254:
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L255
.L257:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	mov	r0, r3
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r4, r2, r3
	mov	r1, #8
	bl	calloc
	mov	r3, r0
	str	r3, [r4]
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L256
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #14
	mov	r1, #1
	ldr	r0, .L328+52
	bl	fwrite
	mov	r3, #1
	b	.L322
.L256:
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L255:
	ldr	r3, [fp, #-112]
	cmp	r3, #4
	ble	.L257
	b	.L258
.L253:
	ldr	r3, .L328+8
	mov	r2, #0
	str	r2, [r3, #20]
	ldr	r3, .L328+8
	mov	r2, #0
	str	r2, [r3, #8]
	ldr	r3, .L328+8
	mov	r2, #0
	str	r2, [r3, #24]
	mov	r1, #4
	mov	r0, #5
	bl	calloc
	mov	r3, r0
	mov	r2, r3
	ldr	r3, .L328+168
	str	r2, [r3]
	ldr	r3, .L328+168
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L259
	ldr	r3, .L328+36
	ldr	r4, [r3]
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r0, r3
	bl	strerror
	mov	r5, r0
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r2, r5
	ldr	r1, .L328+44
	mov	r0, r4
	bl	fprintf
	mov	r3, #1
	b	.L322
.L259:
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L260
.L262:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	mov	r0, r3
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r4, r2, r3
	mov	r1, #4
	bl	calloc
	mov	r3, r0
	str	r3, [r4]
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L261
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #14
	mov	r1, #1
	ldr	r0, .L328+52
	bl	fwrite
	mov	r3, #1
	b	.L322
.L261:
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L260:
	ldr	r3, [fp, #-112]
	cmp	r3, #4
	ble	.L262
.L258:
	ldr	r0, [fp, #-120]
	bl	read_profile
	mov	r3, r0
	ldr	r2, .L328+48
	str	r3, [r2]
	ldr	r3, .L328+48
	ldr	r3, [r3]
	cmp	r3, #0
	bgt	.L263
	mov	r3, #1
	b	.L322
.L263:
	ldr	r3, .L328+8
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L264
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L265
.L266:
	ldr	r3, .L328+164
	ldr	r3, [r3]
	add	r3, r3, #16
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #3
	add	r1, r2, r3
	sub	r3, fp, #44
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L265:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	ldr	r2, [fp, #-112]
	cmp	r2, r3
	blt	.L266
	ldr	r3, .L328+24
	ldmia	r3, {r0-r1}
	mov	r2, #0
	mov	r3, #0
	bl	__aeabi_dcmpeq
	mov	r3, r0
	cmp	r3, #0
	bne	.L267
	mov	r3, #0
	str	r3, [fp, #-108]
	b	.L269
.L274:
	mov	r2, #0
	mov	r3, #0
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	mov	r3, #0
	str	r3, [fp, #-104]
	b	.L270
.L271:
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-104]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-108]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	ldr	r3, .L328+24
	ldmia	r3, {r2-r3}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	sub	r1, fp, #52
	ldmia	r1, {r0-r1}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	str	r2, [fp, #-52]
	str	r3, [fp, #-48]
	ldr	r3, [fp, #-104]
	add	r3, r3, #1
	str	r3, [fp, #-104]
.L270:
	ldr	r3, [fp, #-104]
	cmp	r3, #3
	ble	.L271
	mov	r3, #0
	str	r3, [fp, #-100]
	b	.L272
.L273:
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-100]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-108]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r0-r1}
	ldr	r3, .L328+24
	ldmia	r3, {r2-r3}
	bl	__aeabi_dadd
	mov	r2, r0
	mov	r3, r1
	mov	r0, r2
	mov	r1, r3
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-100]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-108]
	lsl	r3, r3, #3
	add	r4, r2, r3
	sub	r3, fp, #52
	ldmia	r3, {r2-r3}
	bl	__aeabi_ddiv
	mov	r2, r0
	mov	r3, r1
	stm	r4, {r2-r3}
	ldr	r3, [fp, #-100]
	add	r3, r3, #1
	str	r3, [fp, #-100]
.L272:
	ldr	r3, [fp, #-100]
	cmp	r3, #3
	ble	.L273
	ldr	r3, [fp, #-108]
	add	r3, r3, #1
	str	r3, [fp, #-108]
.L269:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	ldr	r2, [fp, #-108]
	cmp	r2, r3
	blt	.L274
	b	.L267
.L264:
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L275
.L276:
	ldr	r3, .L328+168
	ldr	r3, [r3]
	add	r3, r3, #16
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r3, r2, r3
	mov	r2, #-2147483648
	str	r2, [r3]
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L275:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	ldr	r2, [fp, #-112]
	cmp	r2, r3
	blt	.L276
.L267:
	ldr	r3, .L328+8
	ldr	r3, [r3, #8]
	cmp	r3, #0
	beq	.L277
	mov	r3, #0
	str	r3, [fp, #-96]
	b	.L278
.L281:
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L279
.L280:
	ldr	r2, .L328+56
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #3
	add	r1, r2, r3
	sub	r3, fp, #44
	ldmia	r3, {r2-r3}
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L279:
	ldr	r3, [fp, #-112]
	cmp	r3, #3
	ble	.L280
	ldr	r3, [fp, #-96]
	add	r3, r3, #1
	str	r3, [fp, #-96]
.L278:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	ldr	r2, [fp, #-96]
	cmp	r2, r3
	blt	.L281
	b	.L282
.L277:
	ldr	r3, .L328+8
	ldr	r3, [r3, #24]
	cmp	r3, #0
	beq	.L282
	mov	r1, #44
	ldr	r0, [fp, #-116]
	bl	str_split
	str	r0, [fp, #-60]
	ldr	r3, [fp, #-60]
	cmp	r3, #0
	beq	.L282
	mov	r3, #0
	str	r3, [fp, #-92]
	b	.L283
.L284:
	ldr	r3, [fp, #-92]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-60]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	atof
	mov	r2, r0
	mov	r3, r1
	ldr	r0, .L328+56
	ldr	r1, [fp, #-92]
	lsl	r1, r1, #3
	add	r1, r0, r1
	stm	r1, {r2-r3}
	ldr	r3, [fp, #-92]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-60]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-92]
	add	r3, r3, #1
	str	r3, [fp, #-92]
.L283:
	ldr	r3, [fp, #-92]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-60]
	add	r3, r2, r3
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L284
	ldr	r3, [fp, #-92]
	cmp	r3, #4
	beq	.L285
	ldr	r3, .L328+36
	ldr	r3, [r3]
	ldr	r2, [fp, #-92]
	ldr	r1, .L328+60
	mov	r0, r3
	bl	fprintf
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #106
	mov	r1, #1
	ldr	r0, .L328+64
	bl	fwrite
	mov	r0, #1
	bl	exit
.L285:
	ldr	r0, [fp, #-60]
	bl	free
.L282:
	ldr	r3, .L328+32
	ldr	r3, [r3]
	ldr	r2, [fp, #-128]
	cmp	r2, r3
	ble	.L286
	ldr	r3, .L328+32
	ldr	r3, [r3]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L328+68
	mov	r0, r3
	bl	strcmp
	mov	r3, r0
	cmp	r3, #0
	bne	.L287
	ldr	r3, .L328+72
	ldr	r3, [r3]
	ldr	r2, .L328+76
	str	r3, [r2]
	b	.L288
.L287:
	ldr	r3, .L328+32
	ldr	r3, [r3]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r1, .L328+80
	mov	r0, r3
	bl	fopen
	mov	r3, r0
	ldr	r2, .L328+76
	str	r3, [r2]
	ldr	r3, .L328+76
	ldr	r3, [r3]
	cmp	r3, #0
	bne	.L289
	ldr	r3, .L328+36
	ldr	r4, [r3]
	ldr	r3, .L328+32
	ldr	r3, [r3]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r5, [r3]
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	mov	r0, r3
	bl	strerror
	mov	r6, r0
	bl	__errno_location
	mov	r3, r0
	ldr	r3, [r3]
	str	r3, [sp]
	mov	r3, r6
	mov	r2, r5
	ldr	r1, .L328+84
	mov	r0, r4
	bl	fprintf
	mov	r0, #1
	bl	exit
.L289:
	ldr	r3, .L328+8
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L288
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r3, .L328+32
	ldr	r3, [r3]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L328+88
	bl	fprintf
	b	.L288
.L286:
	ldr	r3, .L328+72
	ldr	r3, [r3]
	ldr	r2, .L328+76
	str	r3, [r2]
.L288:
	ldr	r3, .L328+8
	ldr	r3, [r3, #4]
	cmp	r3, #0
	beq	.L290
	ldr	r3, .L328+76
	ldr	r2, [r3]
	ldr	r3, .L328+72
	ldr	r3, [r3]
	cmp	r2, r3
	beq	.L291
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r3, .L328+32
	ldr	r3, [r3]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L328+92
	bl	fprintf
	b	.L292
.L291:
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #25
	mov	r1, #1
	ldr	r0, .L328+96
	bl	fwrite
.L292:
	ldr	r3, .L328+36
	ldr	r3, [r3]
	ldr	r2, .L328+48
	ldr	r2, [r2]
	ldr	r1, .L328+100
	mov	r0, r3
	bl	fprintf
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #17
	mov	r1, #1
	ldr	r0, .L328+104
	bl	fwrite
	ldr	r3, .L328+8
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L293
	mov	r3, #0
	str	r3, [fp, #-84]
	b	.L294
.L297:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r2, .L328+108
	ldr	r3, [fp, #-84]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	mov	r2, r3
	ldr	r1, .L328+112
	bl	fprintf
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #91
	bl	fputc
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-84]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	str	r3, [fp, #-88]
	b	.L295
.L296:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r3, [fp, #-88]
	ldmia	r3, {r2-r3}
	ldr	r1, .L328+116
	bl	fprintf
	ldr	r3, [fp, #-88]
	add	r3, r3, #8
	str	r3, [fp, #-88]
.L295:
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-84]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, .L328+48
	ldr	r3, [r3]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldr	r2, [fp, #-88]
	cmp	r2, r3
	bcc	.L296
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #2
	mov	r1, #1
	ldr	r0, .L328+120
	bl	fwrite
	ldr	r3, [fp, #-84]
	add	r3, r3, #1
	str	r3, [fp, #-84]
.L294:
	ldr	r3, [fp, #-84]
	cmp	r3, #4
	ble	.L297
	b	.L298
.L293:
	mov	r3, #0
	str	r3, [fp, #-76]
	b	.L299
.L302:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r2, .L328+108
	ldr	r3, [fp, #-76]
	add	r3, r2, r3
	ldrb	r3, [r3]	@ zero_extendqisi2
	mov	r2, r3
	ldr	r1, .L328+112
	bl	fprintf
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #91
	bl	fputc
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-76]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	str	r3, [fp, #-80]
	b	.L300
.L301:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r3, [fp, #-80]
	ldr	r3, [r3]
	mov	r2, r3
	ldr	r1, .L328+124
	bl	fprintf
	ldr	r3, [fp, #-80]
	add	r3, r3, #4
	str	r3, [fp, #-80]
.L300:
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-76]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, .L328+48
	ldr	r3, [r3]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [fp, #-80]
	cmp	r2, r3
	bcc	.L301
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #2
	mov	r1, #1
	ldr	r0, .L328+120
	bl	fwrite
	ldr	r3, [fp, #-76]
	add	r3, r3, #1
	str	r3, [fp, #-76]
.L299:
	ldr	r3, [fp, #-76]
	cmp	r3, #4
	ble	.L302
.L298:
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #86
	mov	r1, #1
	ldr	r0, .L328+128
	bl	fwrite
	mov	r3, #0
	str	r3, [fp, #-72]
	mov	r3, #0
	str	r3, [fp, #-72]
	b	.L303
.L308:
	mov	r3, #0
	str	r3, [fp, #-68]
	b	.L304
.L307:
	ldr	r3, .L328+8
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L305
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-68]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-72]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	str	r2, [fp, #-36]
	str	r3, [fp, #-32]
	ldr	r3, .L328+36
	ldr	r0, [r3]
	sub	r3, fp, #36
	ldmia	r3, {r2-r3}
	ldr	r1, .L328+116
	bl	fprintf
	b	.L306
.L305:
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-68]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r2, [r3]
	ldr	r3, [fp, #-72]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	str	r3, [fp, #-56]
	ldr	r3, .L328+36
	ldr	r3, [r3]
	ldr	r2, [fp, #-56]
	ldr	r1, .L328+124
	mov	r0, r3
	bl	fprintf
.L306:
	ldr	r3, [fp, #-68]
	add	r3, r3, #1
	str	r3, [fp, #-68]
.L304:
	ldr	r3, [fp, #-68]
	cmp	r3, #3
	ble	.L307
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
	ldr	r3, [fp, #-72]
	add	r3, r3, #1
	str	r3, [fp, #-72]
.L303:
	ldr	r3, .L328+48
	ldr	r3, [r3]
	ldr	r2, [fp, #-72]
	cmp	r2, r3
	blt	.L308
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
	ldr	r3, .L328+8
	ldr	r3, [r3, #24]
	cmp	r3, #0
	beq	.L309
	ldr	r3, .L328+36
	ldr	r3, [r3]
	ldr	r2, [fp, #-116]
	ldr	r1, .L328+132
	mov	r0, r3
	bl	fprintf
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L310
.L311:
	ldr	r3, .L328+36
	ldr	r0, [r3]
	ldr	r2, .L328+56
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #3
	add	r3, r2, r3
	ldmia	r3, {r2-r3}
	stm	sp, {r2-r3}
	ldr	r2, [fp, #-112]
	ldr	r1, .L328+136
	bl	fprintf
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L310:
	ldr	r3, [fp, #-112]
	cmp	r3, #4
	ble	.L311
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #2
	mov	r1, #1
	ldr	r0, .L328+140
	bl	fwrite
.L309:
	ldr	r3, .L328+8
	ldr	r3, [r3, #20]
	cmp	r3, #0
	beq	.L312
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #38
	mov	r1, #1
	ldr	r0, .L328+144
	bl	fwrite
.L312:
	ldr	r3, .L328+8
	ldr	r3, [r3, #32]
	cmp	r3, #0
	beq	.L313
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #58
	mov	r1, #1
	ldr	r0, .L328+148
	bl	fwrite
.L313:
	ldr	r3, .L328+8
	ldr	r3, [r3, #36]
	cmp	r3, #0
	beq	.L314
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r2, #45
	mov	r1, #1
	ldr	r0, .L328+152
	bl	fwrite
.L314:
	ldr	r3, .L328+36
	ldr	r3, [r3]
	mov	r1, r3
	mov	r0, #10
	bl	fputc
.L290:
	ldr	r3, .L328+76
	ldr	r0, [r3]
	ldr	r3, .L328+32
	ldr	r3, [r3]
	add	r2, r3, #1
	ldr	r1, .L328+32
	str	r2, [r1]
	lsl	r3, r3, #2
	ldr	r2, [fp, #-132]
	add	r3, r2, r3
	ldr	r3, [r3]
	ldr	r2, .L328+156
	ldr	r2, [r2]
	mov	r1, r3
	bl	process_file
	mov	r3, r0
	cmp	r3, #0
	beq	.L315
	mov	r3, #1
	b	.L322
.L329:
	.align	2
.L328:
	.word	.LC63
	.word	1070596096
	.word	options
	.word	long_options.9171
	.word	.LC41
	.word	optarg
	.word	pseudo_weight
	.word	.LC42
	.word	optind
	.word	stderr
	.word	.LC43
	.word	.LC44
	.word	matLen
	.word	.LC10
	.word	bg
	.word	.LC45
	.word	.LC46
	.word	.LC47
	.word	stdin
	.word	fasta_in
	.word	.LC0
	.word	.LC48
	.word	.LC2
	.word	.LC49
	.word	.LC50
	.word	.LC51
	.word	.LC52
	.word	nucleotide
	.word	.LC53
	.word	.LC54
	.word	.LC55
	.word	.LC56
	.word	.LC57
	.word	.LC58
	.word	.LC59
	.word	.LC21
	.word	.LC60
	.word	.LC61
	.word	.LC62
	.word	stdout
	.word	options
	.word	lpm
	.word	pwm
	.word	.LC63
.L315:
	ldr	r3, .L328+160
	ldr	r3, [r3, #16]
	cmp	r3, #0
	beq	.L316
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L317
.L318:
	ldr	r3, .L328+164
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L317:
	ldr	r3, [fp, #-112]
	cmp	r3, #4
	ble	.L318
	ldr	r3, .L328+164
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
	b	.L319
.L316:
	mov	r3, #0
	str	r3, [fp, #-112]
	b	.L320
.L321:
	ldr	r3, .L328+168
	ldr	r2, [r3]
	ldr	r3, [fp, #-112]
	lsl	r3, r3, #2
	add	r3, r2, r3
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
	ldr	r3, [fp, #-112]
	add	r3, r3, #1
	str	r3, [fp, #-112]
.L320:
	ldr	r3, [fp, #-112]
	cmp	r3, #4
	ble	.L321
	ldr	r3, .L328+168
	ldr	r3, [r3]
	mov	r0, r3
	bl	free
.L319:
	mov	r3, #0
.L322:
	ldr	r2, .L328+172
	ldr	r1, [r2]
	ldr	r2, [fp, #-24]
	eors	r1, r2, r1
	mov	r2, #0
	beq	.L323
	bl	__stack_chk_fail
.L323:
	mov	r0, r3
	sub	sp, fp, #16
	@ sp needed
	pop	{r4, r5, r6, fp, pc}
	.size	main, .-main
	.section	.rodata
	.align	2
	.type	__PRETTY_FUNCTION__.9158, %object
	.size	__PRETTY_FUNCTION__.9158, 10
__PRETTY_FUNCTION__.9158:
	.ascii	"str_split\000"
	.align	2
.LC64:
	.ascii	"best\000"
	.align	2
.LC65:
	.ascii	"debug\000"
	.align	2
.LC66:
	.ascii	"help\000"
	.align	2
.LC67:
	.ascii	"forward\000"
	.align	2
.LC68:
	.ascii	"matrix\000"
	.align	2
.LC69:
	.ascii	"prob\000"
	.align	2
.LC70:
	.ascii	"seqnorm\000"
	.align	2
.LC71:
	.ascii	"unorm\000"
	.align	2
.LC72:
	.ascii	"nohdr\000"
	.align	2
.LC73:
	.ascii	"pweight\000"
	.align	2
.LC74:
	.ascii	"lpm\000"
	.align	2
.LC75:
	.ascii	"pwm\000"
	.data
	.align	2
	.type	long_options.9171, %object
	.size	long_options.9171, 208
long_options.9171:
	.word	.LC64
	.word	0
	.word	0
	.word	98
	.word	.LC65
	.word	0
	.word	0
	.word	100
	.word	.LC66
	.word	0
	.word	0
	.word	104
	.word	.LC67
	.word	0
	.word	0
	.word	102
	.word	.LC68
	.word	1
	.word	0
	.word	109
	.word	.LC69
	.word	1
	.word	0
	.word	112
	.word	.LC70
	.word	0
	.word	0
	.word	113
	.word	.LC71
	.word	0
	.word	0
	.word	117
	.word	.LC72
	.word	0
	.word	0
	.word	114
	.word	.LC73
	.word	1
	.word	0
	.word	119
	.word	.LC74
	.word	0
	.word	options+16
	.word	1
	.word	.LC75
	.word	0
	.word	options+12
	.word	1
	.word	0
	.word	0
	.word	0
	.word	0
	.ident	"GCC: (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0"
	.section	.note.GNU-stack,"",%progbits
