Example sentences for: indel

How can you use “indel” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Since our algorithms are based on searching for clusters of common sites, microsatellites can score high, but tend not to be functional (for an exception see [ 9 ] ). We used the Tandem Repeat Remover [ 17 ] to mask microsatellites, with scoring parameters (2 5 5 75 20 20 500) (respectively; match, mismatch, indel scores; percentage priors for mismatch and indels; minimum score, and maximum length) which are as promiscuous as possible yet did not detect appreciable microsatellites in random sequences.

  • Protein alignments were generated using the Clustal X program and checked manually [ 40 ] . SSU NA sequences were aligned using Clustal W as implemented by the OMIGA package and checked manually [ 41 42 ] . NA alignments of full-length moeZ sequences for indel analysis were aligned manually based on the Clustal X protein sequence alignment.

  • The results of the indel analysis also suggest that Ps-moeZ is more closely related to the mycobacteria moeZ sequences than to the cyanobacteria and proteobacteria moeZ sequences.

  • The COMM domain [ 24], a rigid but mobile domain as originally defined with S. typhimurium TrpEb_1 [ 25], differs from the corresponding region of the TrpEb_2 subfamily by the presence of an indel.

  • (Except that for some Kir and KirBac sequences the PhiBlast approach predicted that the two residue indel near the beginning of S6 occurred within S6 instead of in the P-S6 loop.



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