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Genetic and genomic insights into age at natural menopause


The age at natural menopause shows great variability. It has been proposed that early age at menopause is a risk factor for osteoporosis and cardiovascular disease, whereas later age at menopause is a risk factor for breast cancer. In addition, it is thought that the genetic factors accounting for the genetic variability in age at menopause could also play a role in those diseases, as well as infertility in women. In this minireview we comment on the latest genetics and genomics insights into age at natural menopause.

Why study the genetic factors influencing the age at natural menopause?

Natural menopause is defined as the cessation of menstrual cycles for 12 consecutive months, resulting from a lack of ovarian follicular activity. It is a biological process occurring between approximately 40 and 60 years of age, with a mean value at approximately 51 years [1].

In recent decades, the timing of menopause has gained attention for several reasons. Firstly, in most Western countries, a trend towards increased maternal age has been recognized. In this context, prediction of an early menopause (that is, early onset of subfertility or infertility) is of clinical significance [2]. Secondly, early onset of menopause is associated with a higher risk of cardiovascular diseases and osteoporosis, whereas a later menopausal age has been associated with an increased risk of breast cancer [1]. In addition, human population studies have reported that older age at menopause is positively correlated with longevity [3]. Therefore, it is hypothesized that those factors influencing age at natural menopause (ANM) may also play a role in the etiology and/or course of those common diseases, in addition to an association with infertility and aging.

Although some environmental and lifestyle factors influencing ANM have been identified [1], a great heritability for ANM has been estimated, ranging from 31% to 53% [4], and 70% to 85% in singleton sisters [2]. Thus, it is assumed that an important genetic component also accounts for the variability observed in the timing of menopause. In this minireview we will comment on the latest insights into ANM.

Genetics and genomics of age at natural menopause

The search for genetic variants influencing ANM has mainly focused on candidate molecular pathways for which previous clinical and/or biological evidence suggested an involvement in ovary senescence.

For instance, given the pivotal role of estrogens in female reproduction, some genes participating in the synthesis, mechanism of action and degradation of those hormones have been analyzed and proposed as predictor factors for ANM, such as ESR1 (estrogen receptor alpha) gene [5], CYP17A1 (cytochrome P450, family 17, subfamily A, polypeptide 1) gene [6] or CYP1B1 (cytochrome P450, family 1, subfamily B, polypeptide 1) gene [7]. Other studies have analyzed genes with a role in thrombophilia and vascular homeostasis, since ovarian senescence is partly due to aging of the vascular supply to the ovary. In this context, coagulation factors V and VII have been associated with reduced and increased ANM, respectively [8, 9]. However, other studies could not replicate some of these findings, and the real effect of these variants on ANM remains to be clarified.

Other researchers have developed hypothesisfree strategies that do not focus on candidate molecular pathways. Instead, these strategies interrogate thousands of genetic markers, spread along the genome, to identify genomic loci that could be involved in the trait under study, without prior assumptions about the underlying mechanism. Two of those strategies have been applied to the study of ANM: linkage studies and genomewide association studies (GWASs).

van Asselt et al. [10] reported a genomewide linkage analysis in extremely concordant and discordant sibling pairs. One year later, Murabito et al. [11] carried out a genomewide linkage analysis of ANM in a populationbased sample. The linkage signals detected in both studies were different, and thus could not be replicated. The different study designs in the two reports are likely, at least partially, to account for these discrepancies. Nonetheless, both studies proposed attractive candidate loci for age at menopause, such as the BCL2 (Bcell CLL/lymphoma 2) gene on 9q21.3 due to its role in apoptosis [10], or the GNRH1 (gonadotropinreleasing hormone 1 (luteinizing-releasing hormone)) gene close to 8p22, which is a key molecule in the hypothalamicpituitarygonadal axis that controls human reproduction [11].

Two recent articles report the first genomewide analyses on ANM. Stolk et al. [12] carried out a twostage GWAS. The first stage combined 2,368 samples from the Rotterdam Study with 611 samples from the TwinsUK Study. The second stage comprised 2,560 samples of four additional cohorts of postmenopausal females of European ancestry. The authors identified six common single nucleotide polymorphisms (SNPs) that were significant genomewide in the combined stages 1 and 2 of their study. Four SNPs were located in the same haplotype block within the chromosomal region 19q13.4; rs236114 was located on 20p12.3, and rs7333181 on 13q34 [12]. Stolk and colleagues reported a joint analysis of two GWASs from the Nurses' Health Study (n = 2,287) and the Women's Genome Health Study (n = 15,151).They found 13 markers showing strong association in the joint analysis. These markers were clustered in four different chromosomal regions (5q35.2, 6p24.2, 19q13.42 and 20p12.3) [13]. Interestingly, two of those regions, 19q13.4 and 20p12.3, were identified in both independent studies (Table 1).

Table 1 Chromosomal regions and genome-wide significant markers reported by Stolk et al. (2009) [12] and He et al. (2009) [13]

The effect sizes for four markers at 19q13.4 are virtually the same in both studies. Two markers (rs12611091 and rs7246479) at this region were detected as significant signals only in the study by He et al. [13]. It is possible that two markers were not genotyped or they could have failed quality criteria in the study by Stolk et al. [12]. Interestingly, these two markers seem to be associated with a later age at menopause (beta >0), the opposite effect to that observed for the other significant markers at the same region. It is possible that minor alleles of rs12611091 and rs7246479 are in 'trans' with the minor alleles of the other four markers at the same haplotypic block.

The two significant markers at region 20q12.3 show different effect sizes (Table 1). According to HapMap data (phase III, CEU analysis panel comprising 30 trios of US residents with ancestry from Northern and Western Europe, collected by the Centre d'Etude du Polymorphisme Humain (CEPH)), both markers are in complete linkage disequilibrium (D' = 1). Therefore, they could be proxies for the same causative genetic variant. As rs16991615 shows a larger effect size, it is tempting to speculate that rs16991615 is closer to a causal variant than rs236114, which would account for the observed differences in the effect sizes between both markers.

Lessons learned from new insights into age of menopause

These two recent GWASs have highlighted the potential implications of new loci in the timing of natural menopause. Little is known about the function of these new candidate genes. HK3 (hexokinase 3 (white cell)) is involved in carbohydrate metabolism, and UIMC1 (ubiquitin interaction motif containing 1) can act as a transcriptional repressor and is involved in DNA damage resistance, G2/M checkpoint control, and DNA repair through binding with BRCA1 (breast cancer 1 early onset) gene complexes. SYCP2L (synaptonemal complex protein 2like) knockout mice are sterile in male and subfertile with sharply reduced litter size in female mice. The BRSK1 (BR serine/threonine kinase 1) gene is required for neuronal polarization, while the MCM8 (minichromosome maintenance complex component 8) gene is involved in DNA replication [12, 13]. Therefore, these genes and others involved in the same molecular pathways have become very attractive candidates for further investigations in ANM.

In addition, it should be borne in mind that the significant SNPs reported in both studies may not be the causal variants, but they could be in linkage disequilibrium with the causal variants. In this sense, other loci close to or within the haplotype blocks reported in both studies, such as the genes TRMT6 (tRNA methyltransferase 6 homolog (S. cerevisiae)), SUV420H2 (suppressor of variegation 420 homolog 2 (Drosophila)), ZNF346 (zinc finger protein 346), HSPBP1 (HSPA (heat shock 70 kDa) binding protein, cytoplasmic cochaperone 1), GCM2 (glial cells missing homolog 2 (Drosophila)) or UNC5A (unc5 homolog A (C. elegans)), could be related to ANM and they should also be analyzed in further studies.

Beyond the successful identification of two strong, consistent and novel loci for ANM, further reanalyses of datasets produced during both projects may have a deep impact on the validation or refutation of previously proposed candidate genes for ANM [59].

Moreover, the application of novel analytical techniques, such as epistasis or pathwaybased approaches to available datasets, may add new layers of knowledge and will produce novel discoveries by recycling generated genotypes. Thus, we anticipate that the results obtained in both GWASs might represent only the tip of an iceberg of ongoing research.

How this novel knowledge can be used to potentially treat infertility in young women

The latest insights into ANM have no immediate medical applications in young women. To date, there is no complete model of causation able to predict, with some accuracy, the timing of menopause in women.

In fact, the markers proposed by Stolk et al. and He et al. account for only 1.1% and 2.69%, respectively, of the variability observed in the samples analyzed [12, 13], which shows that there must be additional environmental and genetic factors accounting for the observed variability. The identification of those factors is necessary to build a predictive model for ANM. This model will allow the early recognition of women at risk of early menopause, and hence a shorter reproductive life span, as well as the application of preventive measures, from the initial stages of life, to women at risk.

Finally, the identification of genetic variants influencing ANM has potential implications for the treatment of infertile women. Those genes associated with ANM could be used as targets to develop new drugs aimed at delaying the end of the reproductive capacity in women by, for instance, preventing premature depletion of the ovarian pool of oocytes.



age at natural menopause


Centre d'Etude du Polymorphisme Humain


genome-wide association study


single nucleotide polymorphism.


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We are deeply grateful to Antonio Gonzalez for his critical revision of the manuscript. This work has been partially supported by the Ministerio de educación y Ciencia of Spain (CIT-090100-2007-57) and the Corporación Tecnológica de Andalucía (07/126).

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Correspondence to Jose Jorge Galan.

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Competing interests

FJM and JJG are employees of Neocodex SL. AR is a stakeholder of Neocodex SL. In addition, the authors declare that they have no non-financial competing interests.

Authors' contributions

FJM and JJG made substantial contributions to conception and design, acquisition of data and analysis and interpretation of data. AR and JJG were involved in drafting the manuscript or revising it critically for important intellectual content. FJM, AR and JJG have given final approval of the version to be published.

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Moron, F.J., Ruiz, A. & Galan, J.J. Genetic and genomic insights into age at natural menopause. Genome Med 1, 76 (2009).

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  • Causal Variant
  • Natural Menopause
  • Genomewide Association Study
  • Reproductive Life Span
  • Synaptonemal Complex Protein