Simple job with data manipulation

From MediaWiki

(Difference between revisions)
Jump to: navigation, search
Line 6: Line 6:
Content of uploaded files:
Content of uploaded file:

Revision as of 18:17, 27 May 2012

This is simple single job submitting example with data management. In this case, WN will download source code and executing script from SE and after successful ending of job, result will be uploaded on SE.


(You can download src.tgz directly in your working folder with "wget")

Content of uploaded file:


#include <stdio.h>

int main()
 printf ("hello world!!\n");
 return 0;

1. Make a folder "adv"

[ngrkic@ui jobovi]$ mkdir adv

2. Enter adv folder

[ngrkic@ui jobovi]$ cd adv

3. Extract arhive

[ngrkic@ui adv]$ tar xvzf src.tgz

3. Make a adv.jdl file with next content

Executable = "";
Arguments = "";
StdOutput = "std.out";
StdError = "std.err";
InputSandbox = {""};
OutputSandbox = {"std.out", "std.err"};
Requirements =  RegExp("*",other.GlueCEUniqueID);

4. Make a file with following content

#Downloading source code from SE
lcg-cp lfn:/grid/aegis/power/src.tgz 'src.tgz'

#Extract code 
tar xvzf src.tgz

#Compile C file

gcc hello.c -o hello

#Execute hello program

./hello >> output

#Make tgz arhive of output 
tar cvzf output.tgz output

#Uploads output to SE
lcg-cr -l lfn:/grid/aegis/nikola/hello.SE/output.tgz file:`pwd`/output.tgz
lcg-cr -l lfn:/grid/aegis/nikola/hello.SE/std.err file:`pwd`/std.err

5. Creating VOMS proxy:

[ngrkic@ui hello.SE]$ voms-proxy-init -voms aegis

6. Submiting hello job:

[ngrkic@ui hello.SE]$ glite-wms-job-submit -a hello.jdl

7. Requesting Job status:

[ngrkic@ui hello.SE]$ glite-wms-job-status

======================= glite-wms-job-status Success =====================

Status info for the Job :
Current Status:     Done (Success)
Logged Reason(s):
    - Job terminated successfully
Exit code:          0
Status Reason:      Job terminated successfully
Submitted:          Sat Dec 10 22:54:28 2011 CET

8. Download output file from SE

[ngrkic@ui hello.SE]$ lcg-cp lfn:/grid/aegis/nikola/hello.SE/std.out file:/home/ngrkic/jobovi/hello.SE/std.out

9. Cat std.out

hello world!!
Personal tools