Test-drive the GATK tools and Best Practices pipelines on Terra


Any recommended changes to Best Practices for genotyping-by-sequencing data?

mcrossleymcrossley Madison, WIMember

Hi, I saw a similar question to mine was posted a few years ago but didn't see an answer there.
I am specifically wondering about the pre-processing recommendations - like how duplicate mapping would affect genotyping-by-sequencing data.
Would it be okay for me to skip ahead to variant calling?
Thanks for any insight you can give,


Sign In or Register to comment.