scikit-allel - Explore and analyse genetic variation

This package provides utilities for exploratory analysis of large scale genetic variation data. It is based on numpy, scipy and other established Python scientific libraries.

If you have any questions, find a bug, or would like to suggest a feature, please raise an issue on GitHub.




This package requires numpy, scipy, matplotlib, seaborn, pandas, scikit-learn, h5py, numexpr, bcolz and petl. Please install these dependencies first, then use pip to install scikit-allel:

$ pip install -U scikit-allel



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