--- dataset_info: - config_name: default features: - name: id dtype: string - name: title dtype: string - name: doi dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-SOFTWARE '2': I-SOFTWARE '3': B-VERSION '4': I-VERSION '5': B-PUBLISHER '6': I-PUBLISHER '7': B-URL '8': I-URL '9': B-LANGUAGE '10': I-LANGUAGE - name: software sequence: - name: name dtype: string - name: version sequence: string - name: publisher sequence: string - name: url sequence: string - name: language sequence: string splits: - name: train num_bytes: 54425976 num_examples: 298 download_size: 17969333 dataset_size: 54425976 - config_name: documents features: - name: id dtype: string - name: title dtype: string - name: doi dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-SOFTWARE '2': I-SOFTWARE '3': B-VERSION '4': I-VERSION '5': B-PUBLISHER '6': I-PUBLISHER '7': B-URL '8': I-URL '9': B-LANGUAGE '10': I-LANGUAGE - name: software sequence: - name: name dtype: string - name: version sequence: string - name: publisher sequence: string - name: url sequence: string - name: language sequence: string splits: - name: train num_bytes: 54425976 num_examples: 298 download_size: 17969333 dataset_size: 54425976 - config_name: documents_w_i features: - name: id dtype: string - name: title dtype: string - name: doi dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-SOFTWARE '2': I-SOFTWARE '3': B-VERSION '4': I-VERSION '5': B-PUBLISHER '6': I-PUBLISHER '7': B-URL '8': I-URL '9': B-LANGUAGE '10': I-LANGUAGE - name: software sequence: - name: name dtype: string - name: version sequence: string - name: publisher sequence: string - name: url sequence: string - name: language sequence: string splits: - name: train num_bytes: 54419298 num_examples: 298 download_size: 17966160 dataset_size: 54419298 - config_name: paragraphs features: - name: id dtype: string - name: title dtype: string - name: doi dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-SOFTWARE '2': I-SOFTWARE '3': B-VERSION '4': I-VERSION '5': B-PUBLISHER '6': I-PUBLISHER '7': B-URL '8': I-URL '9': B-LANGUAGE '10': I-LANGUAGE splits: - name: train num_bytes: 57069714 num_examples: 17259 download_size: 16095746 dataset_size: 57069714 - config_name: paragraphs_w_i features: - name: id dtype: string - name: title dtype: string - name: doi dtype: string - name: text dtype: string - name: tokens sequence: string - name: start_offsets sequence: uint32 - name: labels sequence: class_label: names: '0': O '1': B-SOFTWARE '2': I-SOFTWARE '3': B-VERSION '4': I-VERSION '5': B-PUBLISHER '6': I-PUBLISHER '7': B-URL '8': I-URL '9': B-LANGUAGE '10': I-LANGUAGE splits: - name: train num_bytes: 57069714 num_examples: 17259 download_size: 16095193 dataset_size: 57069714 configs: - config_name: default data_files: - split: train path: data/train-* - config_name: documents data_files: - split: train path: documents/train-* - config_name: documents_w_i data_files: - split: train path: documents_w_i/train-* - config_name: paragraphs data_files: - split: train path: paragraphs/train-* - config_name: paragraphs_w_i data_files: - split: train path: paragraphs_w_i/train-* --- # SoFAIR Dataset SoFAIR dataset is a dataset of software mentions in scientific papers that was created as a part of the SoFAIR project (https://sofair.org/). ## Skipped annotations In contrast to the original annotations that are available at https://github.com/SoFairOA/Dataset, we skipped bibliography annotations and software annotations with subtype implicit. This upload also removes some duplicities that were present in the original dataset. We manually investigated those duplicities and merged them. ## Configurations This dataset is available in two configurations: - `documents`: This configuration contains the dataset in a format where each document is a separate example. This configuration is the default one. - `paragraphs`: This configuration contains the dataset in a format where each paragraph is a separate example. - `documents_w_i`: This configuration contains the dataset in a format where each document is a separate example. Implicit software mentions are excluded. - `paragraphs_w_i`: This configuration contains the dataset in a format where each paragraph is a separate example. Implicit software mentions are excluded. ## Fields description Both configurations contain the following fields: - `id`: The unique identifier of the example. In case of `paragraphs` configuration, the id format is `{paper_id}_{paragraph_index}`. - `title`: The title of the paper. - `doi`: The DOI of the paper if available. - `text`: The text of the paragraph or the full text of the paper. - `tokens`: Tokenized text for which the labels are provided. - `start_offsets`: The start character offsets of the tokens in the text. - `labels`: The labels of the tokens. The labels are in the BIO format: - `0`: O - `1`: B-SOFTWARE - `2`: I-SOFTWARE - `3`: B-VERSION - `4`: I-VERSION - `5`: B-PUBLISHER - `6`: I-PUBLISHER - `7`: B-URL - `8`: I-URL - `9`: B-LANGUAGE - `10`: I-LANGUAGE - `software`: This field is only available in the `documents` configuration. It contains the following fields: - `name`: The name of the software. - `version`: The versions of the software. - `publisher`: The publishers of the software. - `url`: The URLs of the software. - `language`: The programming languages of the software. Disambiguation is done on lexical level. Meaning that two software names are considered different if they have different normalized forms. As not every software attribute has mapping to corresponding software, some BIO labeled attributes might not be present here.