} catch (IOException e) {
System.out.println(e.getMessage());
e.printStackTrace();
throw new StingException("Error encountered while writing into output BED file");
}
<BUG>message += "\tSOMATIC";
</BUG>
} else {
<BUG>message += "\tGERMLINE";

}
if ( verbose ) System.out.println(message);</BUG>
}

} catch (IOException e) {
System.out.println(e.getMessage());
e.printStackTrace();
throw new StingException("Error encountered while writing into output BED file");
