forwardIonsDeNovoCheckBoxMenuItem.setText("b-ions");
} else if (searchParameters.getIonSearched1() == PeptideFragmentIon.C_ION) {
forwardIonsDeNovoCheckBoxMenuItem.setText("c-ions");</BUG>
}
forwardIonsDeNovoCheckBoxMenuItem.repaint();
<BUG>if (searchParameters.getIonSearched2() == PeptideFragmentIon.X_ION) {

rewindIonsDeNovoCheckBoxMenuItem.setText("x-ions");
} else if (searchParameters.getIonSearched2() == PeptideFragmentIon.Y_ION) {

rewindIonsDeNovoCheckBoxMenuItem.setText("y-ions");
} else if (searchParameters.getIonSearched2() == PeptideFragmentIon.Z_ION) {
</BUG>
rewindIonsDeNovoCheckBoxMenuItem.setText("z-ions");

forwardIonsDeNovoCheckBoxMenuItem.setText("b-ions");
}
if (searchParameters.getForwardIons().contains(PeptideFragmentIon.C_ION)) {
forwardIonsDeNovoCheckBoxMenuItem.setText("c-ions");
}
forwardIonsDeNovoCheckBoxMenuItem.repaint();
if (searchParameters.getRewindIons().contains(PeptideFragmentIon.X_ION)) {
rewindIonsDeNovoCheckBoxMenuItem.setText("x-ions");
}
if (searchParameters.getRewindIons().contains(PeptideFragmentIon.Y_ION)) {
