waitingHandler.appendReportEndLine();
objectsCache = new ObjectsCache();
objectsCache.setAutomatedMemoryManagement(true);
ProteomicAnalysis analysis = experiment.getAnalysisSet(sample).getProteomicAnalysis(replicateNumber);
analysis.addIdentificationResults(IdentificationMethod.MS2_IDENTIFICATION, new Ms2Identification(getIdentificationReference()));
<BUG>fileImporter = new FileImporter(this, waitingHandler, analysis, shotgunProtocol, identificationParameters, metrics);
fileImporter.importFiles(idFiles, spectrumFiles, processingPreferences, spectrumCountingPreferences, projectDetails, backgroundThread);</BUG>
}
public ObjectsCache getCache() {
return objectsCache;

waitingHandler.appendReportEndLine();
objectsCache = new ObjectsCache();
objectsCache.setAutomatedMemoryManagement(true);
ProteomicAnalysis analysis = experiment.getAnalysisSet(sample).getProteomicAnalysis(replicateNumber);
analysis.addIdentificationResults(IdentificationMethod.MS2_IDENTIFICATION, new Ms2Identification(getIdentificationReference()));
fileImporter = new FileImporter(this, waitingHandler, analysis, identificationParameters, metrics);
fileImporter.importFiles(idFiles, spectrumFiles, processingPreferences, spectrumCountingPreferences, projectDetails, backgroundThread);
}
public ObjectsCache getCache() {
return objectsCache;
