import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
import org.broadinstitute.sting.utils.exceptions.UserException;
import org.broadinstitute.sting.utils.sam.GATKSAMRecord;
public class ContextCovariate implements StandardCovariate {
private int mismatchesContextSize;
<BUG>private int insertionsContextSize;
private int deletionsContextSize;
</BUG>
private byte LOW_QUAL_TAIL;
@Override

import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
import org.broadinstitute.sting.utils.exceptions.UserException;
import org.broadinstitute.sting.utils.sam.GATKSAMRecord;
public class ContextCovariate implements StandardCovariate {
private int mismatchesContextSize;
private int indelsContextSize;
private byte LOW_QUAL_TAIL;
@Override
