public void initModelParametersAndOpererators() {
double rate = 1.0;
if (DEFAULT_CMTC_RATE_REFERENCE_PRIOR || dataLength <= 10) { // TODO Discuss threshold
new Parameter.Builder("clock.rate", "substitution rate")
.prior(PriorType.CTMC_RATE_REFERENCE_PRIOR).initial(rate)
<BUG>.isCMTCRate(true).isNonNegative(true).partitionOptions(this).build(parameters);
new Parameter.Builder(ClockType.UCED_MEAN, "uncorrelated exponential relaxed clock mean").</BUG>
prior(PriorType.CTMC_RATE_REFERENCE_PRIOR).initial(rate)
<BUG>.isCMTCRate(true).isNonNegative(true).partitionOptions(this).build(parameters);
new Parameter.Builder(ClockType.UCLD_MEAN, "uncorrelated lognormal relaxed clock mean").</BUG>
prior(PriorType.CTMC_RATE_REFERENCE_PRIOR).initial(rate)

public void initModelParametersAndOpererators() {
double rate = 1.0;
if (DEFAULT_CMTC_RATE_REFERENCE_PRIOR || dataLength <= 10) { // TODO Discuss threshold
new Parameter.Builder("clock.rate", "substitution rate")
.prior(PriorType.CTMC_RATE_REFERENCE_PRIOR).initial(rate)
.isCMTCRate(true).isNonNegative(true).partitionOptions(this)
.isAdaptiveMultivariateCompatible(true).build(parameters);
new Parameter.Builder(ClockType.UCED_MEAN, "uncorrelated exponential relaxed clock mean").
