Map<String, Object> map = new HashMap<String, Object>();
map.put(getKeyNames().get(0), counts);
return map;
}
private Map<String,Object> annotateIndel(AlignmentContext stratifiedContext, VariantContext vc) {
<BUG>if ( ! stratifiedContext.hasExtendedEventPileup() ) {
</BUG>
return null;
<BUG>}
ReadBackedExtendedEventPileup pileup = stratifiedContext.getExtendedEventPileup();
</BUG>
if ( pileup == null )

Map<String, Object> map = new HashMap<String, Object>();
map.put(getKeyNames().get(0), counts);
return map;
}
private Map<String,Object> annotateIndel(AlignmentContext stratifiedContext, VariantContext vc) {
if ( ! stratifiedContext.hasBasePileup() )
