public int getMappingQuality(ReadAlignment alignment) {
return alignment.getAlignment().getMappingQuality();
}
@Override
public String getAlignedSequence(ReadAlignment alignment) {
<BUG>return alignment.getAlignedSequence().toString();
}</BUG>
@Override
public List<Integer> getAlignedQuality(ReadAlignment alignment) {
return alignment.getAlignedQuality();

public int getMappingQuality(ReadAlignment alignment) {
return alignment.getAlignment().getMappingQuality();
}
@Override
public String getAlignedSequence(ReadAlignment alignment) {
return alignment.getAlignedSequence();
}
@Override
public List<Integer> getAlignedQuality(ReadAlignment alignment) {
return alignment.getAlignedQuality();
