package org.broadinstitute.sting.playground.utils;
import org.broadinstitute.sting.utils.Utils;
public class GenotypingCallStats {
<BUG>public long covered = 0; // number of loci covered in all 3 individuals (not necessarily confidently called)

public long assessed = 0; // number of loci with all 3 genotypes available at or above the specified cutoff
public long ref = 0; // number of assessed loci, where all 3 people have homogeneous reference allele
</BUG>
public int variant = 0; // number of assessed loci where a variant is observed in the individual

package org.broadinstitute.sting.playground.utils;
import org.broadinstitute.sting.utils.Utils;
public class GenotypingCallStats {
public long covered = 0; // number of loci covered in an individual (not necessarily confidently called)
public long assessed = 0; // number of loci with confident calls
public long ref = 0; // number of assessed loci where the reference is called
public int variant = 0; // number of assessed loci where a variant is observed in the individual
