if (!path.equals("")) {
try {
PeptideShakerPathPreferences.setAllPathsIn(path);
} catch (Exception e) {
System.out.println("An error occurred when setting the temporary folder path.");
<BUG>e.printStackTrace();
}</BUG>
}
HashMap<String, String> pathInput = pathSettingsCLIInputBean.getPaths();
for (String id : pathInput.keySet()) {

if (!path.equals("")) {
try {
PeptideShakerPathPreferences.setAllPathsIn(path);
} catch (Exception e) {
System.out.println("An error occurred when setting the temporary folder path.");
e.printStackTrace();
waitingHandler.setRunCanceled();
}
}
HashMap<String, String> pathInput = pathSettingsCLIInputBean.getPaths();
for (String id : pathInput.keySet()) {
