private SecStrucGroup[] groups;
private List<Ladder> ladders;
private List<BetaBridge> bridges;
private Atom[] atoms;
private AtomContactSet contactSet;
<BUG>private Map<String, Integer> indResMap;
</BUG>
public SecStrucCalc(){
ladders = new ArrayList<Ladder>();
bridges = new ArrayList<BetaBridge>();

private SecStrucGroup[] groups;
private List<Ladder> ladders;
private List<BetaBridge> bridges;
private Atom[] atoms;
private AtomContactSet contactSet;
private Map<ResidueNumber, Integer> indResMap;
public SecStrucCalc(){
ladders = new ArrayList<Ladder>();
bridges = new ArrayList<BetaBridge>();
