tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcAA_ALT),
loc, false,
new VariantContextBuilder(VCbase).alleles(A_C).genotypes(gA_C, gAA_ALT).make()});
tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcAA_A_ALT),
loc, false,
<BUG>new VariantContextBuilder(VCbase).alleles(A_C).genotypes(gA_C, new GenotypeBuilder("AA_A").PL(new int[]{30, 71, 73}).make()).make()});
</BUG>
tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcA_G_ALT, vcA_ATC_ALT, vcA_C_G_ALT, vcA_ALT, vcAA_ALT, vcAA_A_ALT),
loc, false,
new VariantContextBuilder(VCbase).alleles(Arrays.asList(Aref, C, ATC, G)).genotypes(new GenotypeBuilder("A_C").PL(new int[]{30, 20, 10, 71, 72, 73, 71, 72, 73, 73}).make(),

tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcAA_ALT),
loc, false,
new VariantContextBuilder(VCbase).alleles(A_C).genotypes(gA_C, gAA_ALT).make()});
tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcAA_A_ALT),
loc, false,
new VariantContextBuilder(VCbase).alleles(A_C).genotypes(gA_C, new GenotypeBuilder("AA_A").PL(new int[]{30, 71, 73}).alleles(noCalls).make()).make()});
tests.add(new Object[]{Arrays.asList(vcA_C_ALT, vcA_G_ALT, vcA_ATC_ALT, vcA_C_G_ALT, vcA_ALT, vcAA_ALT, vcAA_A_ALT),
loc, false,
new VariantContextBuilder(VCbase).alleles(Arrays.asList(Aref, C, ATC, G)).genotypes(new GenotypeBuilder("A_C").PL(new int[]{30, 20, 10, 71, 72, 73, 71, 72, 73, 73}).make(),
