assertEquals(2, typesAndExtensions.size());
assertEquals("cermxml", typesAndExtensions.get("jats"));
assertEquals("images", typesAndExtensions.get("images"));
assertFalse(cmdLineOptionsParser.override());
assertNull(cmdLineOptionsParser.getTimeout());
<BUG>assertEquals(3, cmdLineOptionsParser.getThreadsNumber());
</BUG>
assertNull(cmdLineOptionsParser.getConfigurationPath());
assertEquals("cermxml", cmdLineOptionsParser.getNLMExtension());
assertEquals("cermtxt", cmdLineOptionsParser.getTextExtension());

assertEquals(2, typesAndExtensions.size());
assertEquals("cermxml", typesAndExtensions.get("jats"));
assertEquals("images", typesAndExtensions.get("images"));
assertFalse(cmdLineOptionsParser.override());
assertNull(cmdLineOptionsParser.getTimeout());
assertEquals(-1, cmdLineOptionsParser.getThreadsNumber());
assertNull(cmdLineOptionsParser.getConfigurationPath());
assertEquals("cermxml", cmdLineOptionsParser.getNLMExtension());
assertEquals("cermtxt", cmdLineOptionsParser.getTextExtension());
