if (maxMissedCleavages != null) {
<BUG>prideSearchParameters.setnMissedCleavages(maxMissedCleavages);
prideParametersReport += maxMissedCleavages;</BUG>
} else {
<BUG>prideParametersReport += prideSearchParameters.getnMissedCleavages() + " (default)";
}</BUG>
prideParametersReport += "<br><br><b>Min Precusor Charge:</b> ";
if (minPrecursorCharge != null) {
prideSearchParameters.setMinChargeSearched(new Charge(Charge.PLUS, minPrecursorCharge));
prideParametersReport += minPrecursorCharge;

if (maxMissedCleavages != null) {
for (Enzyme enzyme : prideDigestionPreferences.getEnzymes()) {
prideDigestionPreferences.setnMissedCleavages(enzyme.getName(), maxMissedCleavages);
}
prideParametersReport += maxMissedCleavages;
} else {
prideParametersReport += prideDigestionPreferences.getnMissedCleavages(prideDigestionPreferences.getEnzymes().get(0).getName()) + " (default)";
}
prideParametersReport += "<br><br><b>Min Precusor Charge:</b> ";
if (minPrecursorCharge != null) {
prideSearchParameters.setMinChargeSearched(new Charge(Charge.PLUS, minPrecursorCharge));
prideParametersReport += minPrecursorCharge;
