public static void createRMA6FileFromDAA(String creator,String daaFile,String rma6FileName,boolean useCompression,Document doc,int maxMatchesPerRead,boolean hasMagnitudes,ProgressListener progressListener) throws IOException, CanceledException {
  final RMA6FromBlastCreator rma6Creator=new RMA6FromBlastCreator(creator,BlastFileFormat.DAA,doc.getBlastMode(),new String[]{daaFile},new String[]{},rma6FileName,useCompression,doc,maxMatchesPerRead,hasMagnitudes);
  rma6Creator.parseFiles(progressListener);
}

public static void createRMA6FileFromDAA ( String creator , String daaFile , String rma6FileName , boolean useCompression , Document doc , int maxMatchesPerRead , boolean hasMagnitudes , ProgressListener progressListener ) throws IOException , CanceledException { final RMA6FromBlastCreator rma6Creator = new RMA6FromBlastCreator ( creator , BlastFileFormat . DAA , doc . getBlastMode ( ) , new String [ ] { daaFile } , new String [ ] { } , rma6FileName , useCompression , doc , maxMatchesPerRead , hasMagnitudes ) ; rma6Creator . parseFiles ( progressListener ) ; }
create an rma6 file from a daa file
