public static List<SecStrucState> parseFile(String dsspPath,
			Structure structure, boolean assign)
					throws IOException, StructureException {

		File file = new File(dsspPath);
		Reader read = new FileReader(file);
		BufferedReader reader = new BufferedReader(read);
		return generalParse(reader, structure, assign);
	}
public static List < SecStrucState > parseFile ( String dsspPath , Structure structure , boolean assign ) throws IOException , StructureException { File file = new File ( dsspPath ) ; Reader read = new FileReader ( file ) ; BufferedReader reader = new BufferedReader ( read ) ; return generalParse ( reader , structure , assign ) ; }
Parse a DSSP output file and return the secondary structure
annotation as a List of {@link SecStrucState} objects.

@param dsspPath path to the DSSP file to parse
@param structure Structure object associated to the dssp
@param assign assigns the SS to the structure if true
@return a List of SS annotation objects
@throws StructureException
@throws IOException