def comparebed(args):
    """
    %prog comparebed AP.chr.bed infer.bed

    Compare the scaffold links indicated in two bed files.
    """
    p = OptionParser(comparebed.__doc__)
    opts, args = p.parse_args(args)

    if len(args) != 2:
        sys.exit(not p.print_help())

    abed, bbed = args
    abed = Bed(abed)
    bbed = Bed(bbed)
    query_links(abed, bbed)
    query_links(bbed, abed)
def comparebed ( args ) : p = OptionParser ( comparebed . __doc__ ) opts , args = p . parse_args ( args ) if len ( args ) != 2 : sys . exit ( not p . print_help ( ) ) abed , bbed = args abed = Bed ( abed ) bbed = Bed ( bbed ) query_links ( abed , bbed ) query_links ( bbed , abed )
%prog comparebed AP.chr.bed infer.bed

    Compare the scaffold links indicated in two bed files.