def get_variants_in_region(self, chrom, start, end):
        """Iterate over variants in a region."""
        if self.chrom is not None and chrom == self.chrom:
            # We are going to search for 'NA' since the chromosome was set
            chrom = "NA"

        iterator = self._bgen.iter_variants_in_region(
            CHROM_STR_DECODE.get(chrom, chrom), start, end,
        )
        for info, dosage in iterator:
            yield Genotypes(
                Variant(
                    info.name, CHROM_STR_ENCODE.get(info.chrom, info.chrom),
                    info.pos, [info.a1, info.a2],
                ),
                dosage,
                reference=info.a1,
                coded=info.a2,
                multiallelic=True,
            )
def get_variants_in_region ( self , chrom , start , end ) : if self . chrom is not None and chrom == self . chrom : chrom = "NA" iterator = self . _bgen . iter_variants_in_region ( CHROM_STR_DECODE . get ( chrom , chrom ) , start , end , ) for info , dosage in iterator : yield Genotypes ( Variant ( info . name , CHROM_STR_ENCODE . get ( info . chrom , info . chrom ) , info . pos , [ info . a1 , info . a2 ] , ) , dosage , reference = info . a1 , coded = info . a2 , multiallelic = True , )
Iterate over variants in a region.