public String generateHELMFromFastaPeptide(String notation)
			throws FastaFormatException, MonomerLoadingException, ChemistryException {
		String result = FastaFormat.generatePeptidePolymersFromFASTAFormatHELM1(notation).toHELM2();
		setMonomerFactoryToDefault(notation);
		return result;
	}
public String generateHELMFromFastaPeptide ( String notation ) throws FastaFormatException , MonomerLoadingException , ChemistryException { String result = FastaFormat . generatePeptidePolymersFromFASTAFormatHELM1 ( notation ) . toHELM2 ( ) ; setMonomerFactoryToDefault ( notation ) ; return result ; }
method to generate HELM from a FASTA containing peptide sequence(s)

@param notation
FASTA containing peptide sequence(s)
@return HELM
@throws FastaFormatException
if the FASTA input is not valid
@throws MonomerLoadingException
if the MonomerFactory can not be loaded
@throws ChemistryException
if chemistry engine can not be initialized