def _validate(self):
        '''Tests that the maps agree through composition.'''

        # I used to use the assertion "self.atom_to_uniparc_sequence_maps.keys() == self.atom_to_seqres_sequence_maps.keys() == self.seqres_to_uniparc_sequence_maps.keys()"
        # but that failed for 2IMM where "self.atom_to_uniparc_sequence_maps.keys() == self.seqres_to_uniparc_sequence_maps.keys() == []" but THAT fails for 1IR3 so I removed
        # the assertions entirely.
        for c, m in self.atom_to_seqres_sequence_maps.iteritems():
            if self.seqres_to_uniparc_sequence_maps.keys():
                atom_uniparc_keys = set(self.atom_to_uniparc_sequence_maps.get(c, {}).keys())
                atom_seqres_keys = set(self.atom_to_seqres_sequence_maps.get(c, {}).keys())
                assert(atom_uniparc_keys.intersection(atom_seqres_keys) == atom_uniparc_keys)
                for k, v in m.map.iteritems():
                    uparc_id_1, uparc_id_2 = None, None
                    try:
                        uparc_id_1 = self.seqres_to_uniparc_sequence_maps[c].map[v]
                        uparc_id_2 = self.atom_to_uniparc_sequence_maps[c].map[k]
                    except:
                        continue
                    assert(uparc_id_1 == uparc_id_2)
def _validate ( self ) : for c , m in self . atom_to_seqres_sequence_maps . iteritems ( ) : if self . seqres_to_uniparc_sequence_maps . keys ( ) : atom_uniparc_keys = set ( self . atom_to_uniparc_sequence_maps . get ( c , { } ) . keys ( ) ) atom_seqres_keys = set ( self . atom_to_seqres_sequence_maps . get ( c , { } ) . keys ( ) ) assert ( atom_uniparc_keys . intersection ( atom_seqres_keys ) == atom_uniparc_keys ) for k , v in m . map . iteritems ( ) : uparc_id_1 , uparc_id_2 = None , None try : uparc_id_1 = self . seqres_to_uniparc_sequence_maps [ c ] . map [ v ] uparc_id_2 = self . atom_to_uniparc_sequence_maps [ c ] . map [ k ] except : continue assert ( uparc_id_1 == uparc_id_2 )
Tests that the maps agree through composition.