def fastq_convert_pipe_cl(in_file, data):
    """Create an anonymous pipe converting Illumina 1.3-1.7 to Sanger.

    Uses seqtk: https://github.com/lh3/seqt
    """
    cmd = _seqtk_fastq_prep_cl(data, in_file)
    if not cmd:
        cat_cmd = "zcat" if in_file.endswith(".gz") else "cat"
        cmd = cat_cmd + " " + in_file
    return "<(%s)" % cmd
def fastq_convert_pipe_cl ( in_file , data ) : cmd = _seqtk_fastq_prep_cl ( data , in_file ) if not cmd : cat_cmd = "zcat" if in_file . endswith ( ".gz" ) else "cat" cmd = cat_cmd + " " + in_file return "<(%s)" % cmd
Create an anonymous pipe converting Illumina 1.3-1.7 to Sanger.

    Uses seqtk: https://github.com/lh3/seqt