def run_samtools(align_bams, items, ref_file, assoc_files, region=None,
                 out_file=None):
    """Detect SNPs and indels with samtools mpileup and bcftools.
    """
    return shared_variantcall(_call_variants_samtools, "samtools", align_bams, ref_file,
                              items, assoc_files, region, out_file)
def run_samtools ( align_bams , items , ref_file , assoc_files , region = None , out_file = None ) : return shared_variantcall ( _call_variants_samtools , "samtools" , align_bams , ref_file , items , assoc_files , region , out_file )
Detect SNPs and indels with samtools mpileup and bcftools.