def update_coordinates(self, filename, update_port_locations=True):
        """Update the coordinates of this Compound from a file.

        Parameters
        ----------
        filename : str
            Name of file from which to load coordinates. Supported file types
            are the same as those supported by load()
        update_port_locations : bool, optional, default=True
            Update the locations of Ports so that they are shifted along with
            their anchor particles.  Note: This conserves the location of
            Ports with respect to the anchor Particle, but does not conserve
            the orientation of Ports with respect to the molecule as a whole.

        See Also
        --------
        load : Load coordinates from a file

        """
        if update_port_locations:
            xyz_init = self.xyz
            self = load(filename, compound=self, coords_only=True)
            self._update_port_locations(xyz_init)
        else:
            self = load(filename, compound=self, coords_only=True)
def update_coordinates ( self , filename , update_port_locations = True ) : if update_port_locations : xyz_init = self . xyz self = load ( filename , compound = self , coords_only = True ) self . _update_port_locations ( xyz_init ) else : self = load ( filename , compound = self , coords_only = True )
Update the coordinates of this Compound from a file.

        Parameters
        ----------
        filename : str
            Name of file from which to load coordinates. Supported file types
            are the same as those supported by load()
        update_port_locations : bool, optional, default=True
            Update the locations of Ports so that they are shifted along with
            their anchor particles.  Note: This conserves the location of
            Ports with respect to the anchor Particle, but does not conserve
            the orientation of Ports with respect to the molecule as a whole.

        See Also
        --------
        load : Load coordinates from a file