public static List<SecStrucState> parseInputStream(InputStream dsspIs,
			Structure structure, boolean assign)
					throws IOException, StructureException {

		BufferedReader reader = new BufferedReader(new InputStreamReader(dsspIs));
		return generalParse(reader, structure, assign);
	}
public static List < SecStrucState > parseInputStream ( InputStream dsspIs , Structure structure , boolean assign ) throws IOException , StructureException { BufferedReader reader = new BufferedReader ( new InputStreamReader ( dsspIs ) ) ; return generalParse ( reader , structure , assign ) ; }
Parse a DSSP output file and return the secondary structure
annotation as a List of {@link SecStrucState} objects.

@param dsspIs an InputStream to a DSSP file
@param structure Structure object associated to the dssp
@param assign assigns the SS to the structure if true
@return a List of SS annotation objects
@throws StructureException
@throws IOException