def _postprocess_variants(record_file, data, ref_file, out_file):
    """Post-process variants, converting into standard VCF file.
    """
    if not utils.file_uptodate(out_file, record_file):
        with file_transaction(data, out_file) as tx_out_file:
            cmd = ["dv_postprocess_variants.py", "--ref", ref_file,
                   "--infile", record_file, "--outfile", tx_out_file]
            do.run(cmd, "DeepVariant postprocess_variants %s" % dd.get_sample_name(data))
    return out_file
def _postprocess_variants ( record_file , data , ref_file , out_file ) : if not utils . file_uptodate ( out_file , record_file ) : with file_transaction ( data , out_file ) as tx_out_file : cmd = [ "dv_postprocess_variants.py" , "--ref" , ref_file , "--infile" , record_file , "--outfile" , tx_out_file ] do . run ( cmd , "DeepVariant postprocess_variants %s" % dd . get_sample_name ( data ) ) return out_file
Post-process variants, converting into standard VCF file.