def parse_reaction(reaction_def, default_compartment, context=None):
    """Parse a structured reaction definition as obtained from a YAML file

    Returns a ReactionEntry.
    """

    reaction_id = reaction_def.get('id')
    _check_id(reaction_id, 'Reaction')

    reaction_props = dict(reaction_def)

    # Parse reaction equation
    if 'equation' in reaction_def:
        reaction_props['equation'] = parse_reaction_equation(
            reaction_def['equation'], default_compartment)

    mark = FileMark(context, None, None)
    return ReactionEntry(reaction_props, mark)
def parse_reaction ( reaction_def , default_compartment , context = None ) : reaction_id = reaction_def . get ( 'id' ) _check_id ( reaction_id , 'Reaction' ) reaction_props = dict ( reaction_def ) if 'equation' in reaction_def : reaction_props [ 'equation' ] = parse_reaction_equation ( reaction_def [ 'equation' ] , default_compartment ) mark = FileMark ( context , None , None ) return ReactionEntry ( reaction_props , mark )
Parse a structured reaction definition as obtained from a YAML file

    Returns a ReactionEntry.