def run(args):
    """Run a CWL preparation pipeline.
    """
    dirs, config, run_info_yaml = run_info.prep_system(args.sample_config, args.systemconfig)
    integrations = args.integrations if hasattr(args, "integrations") else {}
    world = run_info.organize(dirs, config, run_info_yaml, is_cwl=True, integrations=integrations)
    create.from_world(world, run_info_yaml, integrations=integrations, add_container_tag=args.add_container_tag)
def run ( args ) : dirs , config , run_info_yaml = run_info . prep_system ( args . sample_config , args . systemconfig ) integrations = args . integrations if hasattr ( args , "integrations" ) else { } world = run_info . organize ( dirs , config , run_info_yaml , is_cwl = True , integrations = integrations ) create . from_world ( world , run_info_yaml , integrations = integrations , add_container_tag = args . add_container_tag )
Run a CWL preparation pipeline.