def main():
    """
    NAME
        kly4s_magic.py

    DESCRIPTION
        converts files generated by SIO kly4S labview program to MagIC formated
        files for use with PmagPy plotting software

    SYNTAX
        kly4s_magic.py -h [command line options]

    OPTIONS
        -h: prints the help message and quits
        -f FILE: specify .ams input file name
        -fad AZDIP: specify AZDIP file with orientations, will create er_samples.txt file
        -fsa SFILE: specify existing er_samples.txt file with orientation information
        -fsp SPFILE: specify existing er_specimens.txt file for appending
        -F MFILE: specify magic_measurements output file
        -Fa AFILE: specify rmag_anisotropy output file
        -ocn ORCON:  specify orientation convention: default is #3 below -only with AZDIP file
        -usr USER: specify who made the measurements
        -loc LOC: specify location name for study
        -ins INST: specify instrument used
        -spc SPEC: specify number of characters to specify specimen from sample
        -ncn NCON:  specify naming convention: default is #1 below

    DEFAULTS
        MFILE: magic_measurements.txt
        AFILE: rmag_anisotropy.txt
        SPFILE: create new er_specimens.txt file
        USER: ""
        LOC: "unknown"
        INST: "SIO-KLY4S"
        SPEC: 1  specimen name is same as sample (if SPEC is 1, sample is all but last character)
    NOTES:
        Sample naming convention:
            [1] XXXXY: where XXXX is an arbitrary length site designation and Y
                is the single character sample designation.  e.g., TG001a is the
                first sample from site TG001.    [default]
            [2] XXXX-YY: YY sample from site XXXX (XXX, YY of arbitary length)
            [3] XXXX.YY: YY sample from site XXXX (XXX, YY of arbitary length)
            [4-Z] XXXXYYY:  YYY is sample designation with Z characters from site XXX
            [5] site name = sample name
            [6] site name entered in site_name column in the orient.txt format input file  -- NOT CURRENTLY SUPPORTED
            [7-Z] [XXX]YYY:  XXX is site designation with Z characters from samples  XXXYYY
            NB: all others you will have to either customize your
                self or e-mail ltauxe@ucsd.edu for help.

       Orientation convention:
            [1] Lab arrow azimuth= azimuth; Lab arrow dip=-dip
                i.e., dip is degrees from vertical down - the hade [default]
            [2] Lab arrow azimuth = azimuth-90; Lab arrow dip = -dip
                i.e., azimuth is strike and dip is hade
            [3] Lab arrow azimuth = azimuth; Lab arrow dip = dip-90
                e.g. dip is degrees from horizontal of drill direction
            [4] Lab arrow azimuth = azimuth; Lab arrow dip = dip
            [5] Lab arrow azimuth = azimuth; Lab arrow dip = 90-dip
            [6] all others you will have to either customize your
                self or e-mail ltauxe@ucsd.edu for help.

    """

    args = sys.argv
    if '-h' in args:
        print(main.__doc__)
        sys.exit()
    dataframe = extractor.command_line_dataframe([['f', True, ''], ['fad', False, ''],
                                                  ['fsa', False, ''], ['fsp', False, ''],
                                                  ['Fsp', False, 'specimens.txt'], ['F', False, 'measurements.txt'],
                                                  ['Fa', False, 'rmag_anisotropy.txt'], ['ocn', False, '3'],
                                                  ['usr', False, ''], ['loc', False, ''],
                                                  ['ins', False, 'SIO-KLY4S'], ['spc', False, 0],
                                                  ['ncn', False, '1'], ['WD', False, '.'],
                                                  ['ID', False, '.'], ['DM', False, 3 ]])
    checked_args = extractor.extract_and_check_args(args, dataframe)
    infile, azdip_infile, samp_infile, spec_infile, spec_outfile, measfile, aniso_outfile, or_con, user, locname, inst, specnum, samp_con, output_dir_path, input_dir_path, data_model_num = extractor.get_vars(['f', 'fad', 'fsa', 'fsp', 'Fsp', 'F', 'Fa', 'ocn', 'usr', 'loc', 'ins', 'spc', 'ncn', 'WD', 'ID', 'DM'], checked_args)
    convert.kly4s(infile, specnum=specnum, locname=locname, inst=inst,
                  user=user, measfile=measfile,or_con=or_con,
                      samp_con=samp_con, aniso_outfile=aniso_outfile,
                      samp_infile=samp_infile, spec_infile=spec_infile,
                      spec_outfile=spec_outfile, azdip_infile=azdip_infile,
                      dir_path=output_dir_path, input_dir_path=input_dir_path,
                      data_model_num=data_model_num)
def main ( ) : args = sys . argv if '-h' in args : print ( main . __doc__ ) sys . exit ( ) dataframe = extractor . command_line_dataframe ( [ [ 'f' , True , '' ] , [ 'fad' , False , '' ] , [ 'fsa' , False , '' ] , [ 'fsp' , False , '' ] , [ 'Fsp' , False , 'specimens.txt' ] , [ 'F' , False , 'measurements.txt' ] , [ 'Fa' , False , 'rmag_anisotropy.txt' ] , [ 'ocn' , False , '3' ] , [ 'usr' , False , '' ] , [ 'loc' , False , '' ] , [ 'ins' , False , 'SIO-KLY4S' ] , [ 'spc' , False , 0 ] , [ 'ncn' , False , '1' ] , [ 'WD' , False , '.' ] , [ 'ID' , False , '.' ] , [ 'DM' , False , 3 ] ] ) checked_args = extractor . extract_and_check_args ( args , dataframe ) infile , azdip_infile , samp_infile , spec_infile , spec_outfile , measfile , aniso_outfile , or_con , user , locname , inst , specnum , samp_con , output_dir_path , input_dir_path , data_model_num = extractor . get_vars ( [ 'f' , 'fad' , 'fsa' , 'fsp' , 'Fsp' , 'F' , 'Fa' , 'ocn' , 'usr' , 'loc' , 'ins' , 'spc' , 'ncn' , 'WD' , 'ID' , 'DM' ] , checked_args ) convert . kly4s ( infile , specnum = specnum , locname = locname , inst = inst , user = user , measfile = measfile , or_con = or_con , samp_con = samp_con , aniso_outfile = aniso_outfile , samp_infile = samp_infile , spec_infile = spec_infile , spec_outfile = spec_outfile , azdip_infile = azdip_infile , dir_path = output_dir_path , input_dir_path = input_dir_path , data_model_num = data_model_num )
NAME
        kly4s_magic.py

    DESCRIPTION
        converts files generated by SIO kly4S labview program to MagIC formated
        files for use with PmagPy plotting software

    SYNTAX
        kly4s_magic.py -h [command line options]

    OPTIONS
        -h: prints the help message and quits
        -f FILE: specify .ams input file name
        -fad AZDIP: specify AZDIP file with orientations, will create er_samples.txt file
        -fsa SFILE: specify existing er_samples.txt file with orientation information
        -fsp SPFILE: specify existing er_specimens.txt file for appending
        -F MFILE: specify magic_measurements output file
        -Fa AFILE: specify rmag_anisotropy output file
        -ocn ORCON:  specify orientation convention: default is #3 below -only with AZDIP file
        -usr USER: specify who made the measurements
        -loc LOC: specify location name for study
        -ins INST: specify instrument used
        -spc SPEC: specify number of characters to specify specimen from sample
        -ncn NCON:  specify naming convention: default is #1 below

    DEFAULTS
        MFILE: magic_measurements.txt
        AFILE: rmag_anisotropy.txt
        SPFILE: create new er_specimens.txt file
        USER: ""
        LOC: "unknown"
        INST: "SIO-KLY4S"
        SPEC: 1  specimen name is same as sample (if SPEC is 1, sample is all but last character)
    NOTES:
        Sample naming convention:
            [1] XXXXY: where XXXX is an arbitrary length site designation and Y
                is the single character sample designation.  e.g., TG001a is the
                first sample from site TG001.    [default]
            [2] XXXX-YY: YY sample from site XXXX (XXX, YY of arbitary length)
            [3] XXXX.YY: YY sample from site XXXX (XXX, YY of arbitary length)
            [4-Z] XXXXYYY:  YYY is sample designation with Z characters from site XXX
            [5] site name = sample name
            [6] site name entered in site_name column in the orient.txt format input file  -- NOT CURRENTLY SUPPORTED
            [7-Z] [XXX]YYY:  XXX is site designation with Z characters from samples  XXXYYY
            NB: all others you will have to either customize your
                self or e-mail ltauxe@ucsd.edu for help.

       Orientation convention:
            [1] Lab arrow azimuth= azimuth; Lab arrow dip=-dip
                i.e., dip is degrees from vertical down - the hade [default]
            [2] Lab arrow azimuth = azimuth-90; Lab arrow dip = -dip
                i.e., azimuth is strike and dip is hade
            [3] Lab arrow azimuth = azimuth; Lab arrow dip = dip-90
                e.g. dip is degrees from horizontal of drill direction
            [4] Lab arrow azimuth = azimuth; Lab arrow dip = dip
            [5] Lab arrow azimuth = azimuth; Lab arrow dip = 90-dip
            [6] all others you will have to either customize your
                self or e-mail ltauxe@ucsd.edu for help.