def estimate_eps(dist_mat, n_closest=5):
    """
    Estimates possible eps values (to be used with DBSCAN)
    for a given distance matrix by looking at the largest distance "jumps"
    amongst the `n_closest` distances for each item.

    Tip: the value for `n_closest` is important - set it too large and you may only get
    really large distances which are uninformative. Set it too small and you may get
    premature cutoffs (i.e. select jumps which are really not that big).

    TO DO this could be fancier by calculating support for particular eps values,
    e.g. 80% are around 4.2 or w/e
    """
    dist_mat = dist_mat.copy()

    # To ignore i == j distances
    dist_mat[np.where(dist_mat == 0)] = np.inf
    estimates = []
    for i in range(dist_mat.shape[0]):
        # Indices of the n closest distances
        row = dist_mat[i]
        dists = sorted(np.partition(row, n_closest)[:n_closest])
        difs = [(x, y,
                (y - x)) for x, y in zip(dists, dists[1:])]
        eps_candidate, _, jump = max(difs, key=lambda x: x[2])

        estimates.append(eps_candidate)
    return sorted(estimates)
def estimate_eps ( dist_mat , n_closest = 5 ) : dist_mat = dist_mat . copy ( ) dist_mat [ np . where ( dist_mat == 0 ) ] = np . inf estimates = [ ] for i in range ( dist_mat . shape [ 0 ] ) : row = dist_mat [ i ] dists = sorted ( np . partition ( row , n_closest ) [ : n_closest ] ) difs = [ ( x , y , ( y - x ) ) for x , y in zip ( dists , dists [ 1 : ] ) ] eps_candidate , _ , jump = max ( difs , key = lambda x : x [ 2 ] ) estimates . append ( eps_candidate ) return sorted ( estimates )
Estimates possible eps values (to be used with DBSCAN)
    for a given distance matrix by looking at the largest distance "jumps"
    amongst the `n_closest` distances for each item.

    Tip: the value for `n_closest` is important - set it too large and you may only get
    really large distances which are uninformative. Set it too small and you may get
    premature cutoffs (i.e. select jumps which are really not that big).

    TO DO this could be fancier by calculating support for particular eps values,
    e.g. 80% are around 4.2 or w/e