public static LinkedHashMap<String, ProteinSequence> readGenbankProteinSequence(
			File file) throws Exception {
		FileInputStream inStream = new FileInputStream(file);
		LinkedHashMap<String, ProteinSequence> proteinSequences = readGenbankProteinSequence(inStream);
		inStream.close();
		return proteinSequences;
	}
public static LinkedHashMap < String , ProteinSequence > readGenbankProteinSequence ( File file ) throws Exception { FileInputStream inStream = new FileInputStream ( file ) ; LinkedHashMap < String , ProteinSequence > proteinSequences = readGenbankProteinSequence ( inStream ) ; inStream . close ( ) ; return proteinSequences ; }
Read a Genbank file containing amino acids with setup that would handle most
cases.

@param file
@return
@throws Exception