def _civic_regions(civic_file, variant_types=None, diseases=None, drugs=None):
    """Retrieve gene regions and names filtered by variant_types and diseases.
    """
    if isinstance(diseases, six.string_types):
        diseases = [diseases]
    with utils.open_gzipsafe(civic_file) as in_handle:
        reader = csv.reader(in_handle, delimiter="\t")
        for chrom, start, end, info_str in reader:
            info = edn_loads(info_str)
            if not variant_types or _matches(info["support"]["variants"], variant_types):
                if not diseases or _matches(info["support"]["diseases"], diseases):
                    if not drugs or _matches(info["support"]["drugs"], drugs):
                        yield (chrom, int(start), int(end), list(info["name"])[0])
def _civic_regions ( civic_file , variant_types = None , diseases = None , drugs = None ) : if isinstance ( diseases , six . string_types ) : diseases = [ diseases ] with utils . open_gzipsafe ( civic_file ) as in_handle : reader = csv . reader ( in_handle , delimiter = "\t" ) for chrom , start , end , info_str in reader : info = edn_loads ( info_str ) if not variant_types or _matches ( info [ "support" ] [ "variants" ] , variant_types ) : if not diseases or _matches ( info [ "support" ] [ "diseases" ] , diseases ) : if not drugs or _matches ( info [ "support" ] [ "drugs" ] , drugs ) : yield ( chrom , int ( start ) , int ( end ) , list ( info [ "name" ] ) [ 0 ] )
Retrieve gene regions and names filtered by variant_types and diseases.