static QueryInterval[] prepareQueryIntervals( final List<Interval>
			rawIntervals, final SAMSequenceDictionary sequenceDictionary ) {
		if ( rawIntervals == null || rawIntervals.isEmpty() ) {
			return null;
		}

		// Convert each SimpleInterval to a QueryInterval
		final QueryInterval[] convertedIntervals =
				rawIntervals.stream()
						.map(rawInterval -> convertSimpleIntervalToQueryInterval(rawInterval, sequenceDictionary))
						.toArray(QueryInterval[]::new);

		// Intervals must be optimized (sorted and merged) in order to use the htsjdk query API
		return QueryInterval.optimizeIntervals(convertedIntervals);
	}
static QueryInterval [ ] prepareQueryIntervals ( final List < Interval > rawIntervals , final SAMSequenceDictionary sequenceDictionary ) { if ( rawIntervals == null || rawIntervals . isEmpty ( ) ) { return null ; } final QueryInterval [ ] convertedIntervals = rawIntervals . stream ( ) . map ( rawInterval -> convertSimpleIntervalToQueryInterval ( rawInterval , sequenceDictionary ) ) . toArray ( QueryInterval [ ] :: new ) ; return QueryInterval . optimizeIntervals ( convertedIntervals ) ; }
Converts a List of SimpleIntervals into the format required by the SamReader query API
@param rawIntervals SimpleIntervals to be converted
@return A sorted, merged list of QueryIntervals suitable for passing to the SamReader query API