public void setIdxlist(List<int[]> idxs) {
			Iterator<int[]> iter = idxs.iterator();
			while (iter.hasNext()){
				int[] e = iter.next();
				idxlist.add(e);
			}
		}
public void setIdxlist ( List < int [ ] > idxs ) { Iterator < int [ ] > iter = idxs . iterator ( ) ; while ( iter . hasNext ( ) ) { int [ ] e = iter . next ( ) ; idxlist . add ( e ) ; } }
Stores the alignment between the residues of several fragments.
Each int[] stores the residue numbers of several equivalent residues.