def reconstruct_files(input_dir):
    '''sorts ``input_dir`` and tries to reconstruct the subdirectories found'''
    input_dir = input_dir.rstrip('/')
    with nl.notify('Attempting to organize/reconstruct directory'):
        # Some datasets start with a ".", which confuses many programs
        for r,ds,fs in os.walk(input_dir):
            for f in fs:
                if f[0]=='.':
                    shutil.move(os.path.join(r,f),os.path.join(r,'i'+f))
        nl.dicom.organize_dir(input_dir)
        output_dir = '%s-sorted' % input_dir
        if os.path.exists(output_dir):
            with nl.run_in(output_dir):
                for dset_dir in os.listdir('.'):
                    with nl.notify('creating dataset from %s' % dset_dir):
                        nl.dicom.create_dset(dset_dir)
        else:
            nl.notify('Warning: failed to auto-organize directory %s' % input_dir,level=nl.level.warning)
def reconstruct_files ( input_dir ) : input_dir = input_dir . rstrip ( '/' ) with nl . notify ( 'Attempting to organize/reconstruct directory' ) : for r , ds , fs in os . walk ( input_dir ) : for f in fs : if f [ 0 ] == '.' : shutil . move ( os . path . join ( r , f ) , os . path . join ( r , 'i' + f ) ) nl . dicom . organize_dir ( input_dir ) output_dir = '%s-sorted' % input_dir if os . path . exists ( output_dir ) : with nl . run_in ( output_dir ) : for dset_dir in os . listdir ( '.' ) : with nl . notify ( 'creating dataset from %s' % dset_dir ) : nl . dicom . create_dset ( dset_dir ) else : nl . notify ( 'Warning: failed to auto-organize directory %s' % input_dir , level = nl . level . warning )
sorts ``input_dir`` and tries to reconstruct the subdirectories found