m._print_bits(,norm=2.3, height=8.0) -- Print a text-rendering of the Motif Logo

        norm   -- maximum number of bits to show
        height -- number of lines of text to use to render logo

def _print_bits(self,norm=2.3, height=8.0):
        """
        m._print_bits(,norm=2.3, height=8.0) -- Print a text-rendering of the Motif Logo

        norm   -- maximum number of bits to show
        height -- number of lines of text to use to render logo
        """
        bits   = []
        tots   = []
        str    = []
        for i in range(self.width):
            D = {}
            tot = 0
            for letter in ['A', 'C', 'T', 'G']:
                if self.logP:
                    Pij = pow(2.0, self.logP[i][letter])
                else:
                    Pij = pow(2.0, self.ll[i][letter]) * self.background[letter]
                if Pij > 0.01:
                    '''Old'''
                    D[letter] = Pij * self.ll[i][letter]
                    #'''new'''
                    #Q = self.background[letter]
                    #D[letter] = ( Pij * math.log(Pij) - Pij * math.log(Q) ) / math.log(2.0)
                    '''for both old and new'''
                    tot = tot + D[letter]
            bits.append(D)
            tots.append(tot)
        for i in range(self.width):
            s = []
            _l = bits[i].keys()
            _l.sort(lambda x,y,D=bits[i]: cmp(D[y],D[x]))
            for key in _l:
                for j in range(int(bits[i][key] / norm * height)):
                    s.append(key)
            str.append(''.join(s))
        fmt = '%%%ds'%height
        print '#  %s'%('-'*self.width)
        for h in range(int(height)):
            sys.stdout.write("#  ")
            for i in range(self.width):
                sys.stdout.write((fmt%str[i])[h])
            if h == 0:
                sys.stdout.write(' -- %4.2f bits\n'%norm)
            elif h == height-1:
                sys.stdout.write(' -- %4.2f bits\n'%(norm/height))
            else:
                sys.stdout.write('\n')
        print '#  %s'%('-'*self.width)
        print '#  %s'%self.oneletter