replaces the suffix on a filename or list of filenames
    example: replace_suffix("/path/to/test.sam", ".bam") ->
    "/path/to/test.bam"

def replace_suffix(to_transform, suffix):
    """
    replaces the suffix on a filename or list of filenames
    example: replace_suffix("/path/to/test.sam", ".bam") ->
    "/path/to/test.bam"

    """
    if is_sequence(to_transform):
        transformed = []
        for f in to_transform:
            (base, _) = os.path.splitext(f)
            transformed.append(base + suffix)
        return transformed
    elif is_string(to_transform):
        (base, _) = os.path.splitext(to_transform)
        return base + suffix
    else:
        raise ValueError("replace_suffix takes a single filename as a string or "
                         "a list of filenames to transform.")