Initializes the allowed state arrays for tips based on their states given by the feature.

    :param tree: tree for which the tip likelihoods are to be initialized
    :type tree: ete3.Tree
    :param feature: feature in which the tip states are stored
        (the value could be None for a missing state or list if multiple stated are possible)
    :type feature: str
    :param states: ordered array of states.
    :type states: numpy.array
    :return: void, adds the get_personalised_feature_name(feature, ALLOWED_STATES) feature to tree tips.

def initialize_allowed_states(tree, feature, states):
    """
    Initializes the allowed state arrays for tips based on their states given by the feature.

    :param tree: tree for which the tip likelihoods are to be initialized
    :type tree: ete3.Tree
    :param feature: feature in which the tip states are stored
        (the value could be None for a missing state or list if multiple stated are possible)
    :type feature: str
    :param states: ordered array of states.
    :type states: numpy.array
    :return: void, adds the get_personalised_feature_name(feature, ALLOWED_STATES) feature to tree tips.
    """
    allowed_states_feature = get_personalized_feature_name(feature, ALLOWED_STATES)
    state2index = dict(zip(states, range(len(states))))

    for node in tree.traverse():
        node_states = getattr(node, feature, set())
        if not node_states:
            allowed_states = np.ones(len(state2index), dtype=np.int)
        else:
            allowed_states = np.zeros(len(state2index), dtype=np.int)
            for state in node_states:
                allowed_states[state2index[state]] = 1
        node.add_feature(allowed_states_feature, allowed_states)