Load the coordinates of the CA of the common residues.

def _load_data_index(self, chain1, chain2):
        """
        Load the coordinates of the CA of the common residues.
        """
        parser = PDB.PDBParser(QUIET=True)

        structure1 = parser.get_structure(chain1, self.pdb1)
        structure2 = parser.get_structure(chain2, self.pdb2)

        residues1 = list(structure1.get_residues())
        residues2 = list(structure2.get_residues())

        indexes1 = set(r.id[1] for r in residues1)
        indexes2 = set(r.id[1] for r in residues2)

        indexes = indexes1.intersection(indexes2)
        self.indexes = indexes.copy()
        self.N = len(indexes)

        coord1 = []
        indexes1 = indexes.copy()
        for r in residues1:
            if r.id[1] in indexes1 and 'CA' in r:
                coord1.append(np.concatenate((r['CA'].get_coord(), (1,)))[:, None])
                # Remove from index to avoid repeated residues
                indexes1.remove(r.id[1])
        coord1 = np.hstack(coord1).astype(DTYPE, copy=False)

        coord2 = []
        for r in residues2:
            if r.id[1] in indexes and 'CA' in r:
                coord2.append(np.concatenate((r['CA'].get_coord(), (1,)))[:, None])
                indexes.remove(r.id[1])
        coord2 = np.hstack(coord2).astype(DTYPE, copy=False)

        self.coord1 = coord1
        self.coord2 = coord2