Produce report metrics for a RNASeq experiment using Picard
        with a sorted aligned BAM file.

def report(self, align_bam, ref_file, gtf_file, is_paired=False, rrna_file="null"):
        """Produce report metrics for a RNASeq experiment using Picard
        with a sorted aligned BAM file.

        """

        # collect duplication metrics
        dup_metrics = self._get_current_dup_metrics(align_bam)
        align_metrics = self._collect_align_metrics(align_bam, ref_file)
        insert_graph, insert_metrics = (None, None)
        if is_paired:
            insert_graph, insert_metrics = self._insert_sizes(align_bam)

        rnaseq_metrics = self._rnaseq_metrics(align_bam, gtf_file, rrna_file)

        summary_info = self._parser.get_summary_metrics(align_metrics,
                                                dup_metrics,
                                                insert_metrics=insert_metrics,
                                                rnaseq_metrics=rnaseq_metrics)
        graphs = []
        if insert_graph and file_exists(insert_graph):
            graphs.append((insert_graph,
                           "Distribution of paired end insert sizes"))
        return summary_info, graphs