input: string, name of a file containing a Bioquali-like graph description
    output: asp.TermSet, with atoms matching the contents of the input file

    Parses a Bioquali-like graph description, and returns
    a TermSet object.
    Written using original Bioquali

def readGraph(filename):
    p = graph_parser.Parser()
    """
    input: string, name of a file containing a Bioquali-like graph description
    output: asp.TermSet, with atoms matching the contents of the input file

    Parses a Bioquali-like graph description, and returns
    a TermSet object.
    Written using original Bioquali
    """

    accu = TermSet()
    file = open(filename,'r')
    s = file.readline()
    while s!="":
        try:
            accu = p.parse(s)
        except EOFError:
            break
        s = file.readline()

    return accu