Parses species and initial geometry.

def _read_species_and_inital_geometry(self):
        """
        Parses species and initial geometry.
        """
        header_pattern = r"Standard Nuclear Orientation \(Angstroms\)\s+I\s+Atom\s+X\s+Y\s+Z\s+-+"
        table_pattern = r"\s*\d+\s+([a-zA-Z]+)\s*([\d\-\.]+)\s*([\d\-\.]+)\s*([\d\-\.]+)\s*"
        footer_pattern = r"\s*-+"
        temp_geom = read_table_pattern(self.text, header_pattern,
                                       table_pattern, footer_pattern)
        if temp_geom == None or len(temp_geom) == 0:
            self.data["species"] = None
            self.data["initial_geometry"] = None
            self.data["initial_molecule"] = None
            self.data["point_group"] = None
        else:
            temp_point_group = read_pattern(
            self.text, {
                "key":
                r"Molecular Point Group\s+([A-Za-z\d\*]+)"
            },
            terminate_on_match=True).get('key')
            if temp_point_group != None:
                self.data["point_group"] = temp_point_group[0][0]
            else:
                self.data["point_group"] = None
            temp_geom = temp_geom[0]
            species = []
            geometry = np.zeros(shape=(len(temp_geom), 3), dtype=float)
            for ii, entry in enumerate(temp_geom):
                species += [entry[0]]
                for jj in range(3):
                    geometry[ii, jj] = float(entry[jj + 1])
            self.data["species"] = species
            self.data["initial_geometry"] = geometry
            self.data["initial_molecule"] = Molecule(
                species=species,
                coords=geometry,
                charge=self.data.get('charge'),
                spin_multiplicity=self.data.get('multiplicity'))