Initializes a NEBAnalysis object from a directory of a NEB run.
        Note that OUTCARs must be present in all image directories. For the
        terminal OUTCARs from relaxation calculations, you can specify the
        locations using relaxation_dir. If these are not specified, the code
        will attempt to look for the OUTCARs in 00 and 0n directories,
        followed by subdirs "start", "end" or "initial", "final" in the
        root_dir. These are just some typical conventions used
        preferentially in Shyue Ping's MAVRL research group. For the
        non-terminal points, the CONTCAR is read to obtain structures. For
        terminal points, the POSCAR is used. The image directories are
        assumed to be the only directories that can be resolved to integers.
        E.g., "00", "01", "02", "03", "04", "05", "06". The minimum
        sub-directory structure that can be parsed is of the following form (
        a 5-image example is shown):

        00:
        - POSCAR
        - OUTCAR
        01, 02, 03, 04, 05:
        - CONTCAR
        - OUTCAR
        06:
        - POSCAR
        - OUTCAR

        Args:
            root_dir (str): Path to the root directory of the NEB calculation.
            relaxation_dirs (tuple): This specifies the starting and ending
                relaxation directories from which the OUTCARs are read for the
                terminal points for the energies.

        Returns:
            NEBAnalysis object.

def from_dir(cls, root_dir, relaxation_dirs=None, **kwargs):
        """
        Initializes a NEBAnalysis object from a directory of a NEB run.
        Note that OUTCARs must be present in all image directories. For the
        terminal OUTCARs from relaxation calculations, you can specify the
        locations using relaxation_dir. If these are not specified, the code
        will attempt to look for the OUTCARs in 00 and 0n directories,
        followed by subdirs "start", "end" or "initial", "final" in the
        root_dir. These are just some typical conventions used
        preferentially in Shyue Ping's MAVRL research group. For the
        non-terminal points, the CONTCAR is read to obtain structures. For
        terminal points, the POSCAR is used. The image directories are
        assumed to be the only directories that can be resolved to integers.
        E.g., "00", "01", "02", "03", "04", "05", "06". The minimum
        sub-directory structure that can be parsed is of the following form (
        a 5-image example is shown):

        00:
        - POSCAR
        - OUTCAR
        01, 02, 03, 04, 05:
        - CONTCAR
        - OUTCAR
        06:
        - POSCAR
        - OUTCAR

        Args:
            root_dir (str): Path to the root directory of the NEB calculation.
            relaxation_dirs (tuple): This specifies the starting and ending
                relaxation directories from which the OUTCARs are read for the
                terminal points for the energies.

        Returns:
            NEBAnalysis object.
        """
        neb_dirs = []

        for d in os.listdir(root_dir):
            pth = os.path.join(root_dir, d)
            if os.path.isdir(pth) and d.isdigit():
                i = int(d)
                neb_dirs.append((i, pth))
        neb_dirs = sorted(neb_dirs, key=lambda d: d[0])
        outcars = []
        structures = []

        # Setup the search sequence for the OUTCARs for the terminal
        # directories.
        terminal_dirs = []
        if relaxation_dirs is not None:
            terminal_dirs.append(relaxation_dirs)
        terminal_dirs.append((neb_dirs[0][1], neb_dirs[-1][1]))
        terminal_dirs.append([os.path.join(root_dir, d)
                              for d in ["start", "end"]])
        terminal_dirs.append([os.path.join(root_dir, d)
                              for d in ["initial", "final"]])

        for i, d in neb_dirs:
            outcar = glob.glob(os.path.join(d, "OUTCAR*"))
            contcar = glob.glob(os.path.join(d, "CONTCAR*"))
            poscar = glob.glob(os.path.join(d, "POSCAR*"))
            terminal = i == 0 or i == neb_dirs[-1][0]
            if terminal:
                for ds in terminal_dirs:
                    od = ds[0] if i == 0 else ds[1]
                    outcar = glob.glob(os.path.join(od, "OUTCAR*"))
                    if outcar:
                        outcar = sorted(outcar)
                        outcars.append(Outcar(outcar[-1]))
                        break
                else:
                    raise ValueError("OUTCAR cannot be found for terminal "
                                     "point %s" % d)
                structures.append(Poscar.from_file(poscar[0]).structure)
            else:
                outcars.append(Outcar(outcar[0]))
                structures.append(Poscar.from_file(contcar[0]).structure)
        return NEBAnalysis.from_outcars(outcars, structures, **kwargs)