Import a structure object from a PDB file.

def pdb_to_structure(filename):
    """Import a structure object from a PDB file.
    """

    try:
        from Bio.PDB import PDB
    except ImportError:
        print("I can't import Biopython which is needed to handle PDB files.")
        raise
    p = PDB.PDBParser()
    structure = p.get_structure('S', filename)
    for _ in structure.get_chains():
        atoms = [np.array(atom.get_coord()) for atom in structure.get_atoms()]
    return atoms