<filename>molsysmt/physchem/groups/hydrophobicity.py
# <NAME>., <NAME>. & <NAME>.; Eur. J. Biochem. 1982, 128, 565–575.

argos={
    'ALA': 0.610,
    'ARG': 0.600,
    'ASN': 0.060,
    'CYS': 1.070,
    'GLN': 0.000,
    'GLU': 0.470,
    'GLY': 0.070,
    'HIS': 0.610,
    'ILE': 2.220,
    'LEU': 1.530,
    'LYS': 1.150,
    'MET': 1.180,
    'PHE': 2.020,
    'PRO': 1.950,
    'SER': 0.050,
    'THR': 0.050,
    'TRP': 2.650,
    'TYR': 1.880,
    'VAL': 1.320 
}

# <NAME>., <NAME>., <NAME>., <NAME>. J. Mol. Biol. 179:125-142(1984).

eisenberg = {
    'ALA':  0.620,
    'ARG': -2.530,
    'ASN': -0.780,
    'CYS':  0.290,
    'GLN': -0.850,
    'GLU': -0.740,
    'GLY':  0.480,
    'HIS': -0.400,
    'ILE':  1.380,
    'LEU':  1.060,
    'LYS': -1.500,
    'MET':  0.640,
    'PHE':  1.190,
    'PRO':  0.120,
    'SER': -0.180,
    'THR': -0.050,
    'TRP':  0.810,
    'TYR':  0.260,
    'VAL':  1.080
}

# <NAME>., <NAME>.; J. Mol. Biol. 171:479-488(1983).

sweet ={
    'ALA': -0.400,
    'ARG': -0.590,
    'ASN': -0.920,
    'ASP': -1.310,
    'CYS':  0.170,
    'GLN': -0.910,
    'GLU': -1.220,
    'GLY': -0.670,
    'HIS': -0.640,
    'ILE':  1.250,
    'LEU':  1.220,
    'LYS': -0.670,
    'MET':  1.020,
    'PHE':  1.920,
    'PRO': -0.490,
    'SER': -0.550,
    'THR': -0.280,
    'TRP':  0.500,
    'TYR':  1.670,
    'VAL':  0.910
}

# <NAME>., <NAME>.; J. Mol. Biol. 157:105-132(1982).

kyte ={
    'ALA':  1.800,
    'ARG': -4.500,
    'ASN': -3.500,
    'ASP': -3.500,
    'CYS':  2.500,
    'GLN': -3.500,
    'GLU': -3.500,
    'GLY': -0.400,
    'HIS': -3.200,
    'ILE':  4.500,
    'LEU':  3.800,
    'LYS': -3.900,
    'MET':  1.900,
    'PHE':  2.800,
    'PRO': -1.600,
    'SER': -0.800,
    'THR': -0.700,
    'TRP': -0.900,
    'TYR': -1.300,
    'VAL':  4.200
}

# <NAME>., <NAME>.; Proteins: Structure, Function and Genetics 2:130-152(1987).

abraham ={
    'ALA':  0.440,
    'ARG': -2.420,
    'ASN': -1.320,
    'ASP': -0.310,
    'CYS':  0.580,
    'GLN': -0.710,
    'GLU': -0.340,
    'GLY':  0.000,
    'HIS': -0.010,
    'ILE':  2.460,
    'LEU':  2.460,
    'LYS': -2.450,
    'MET':  1.100,
    'PHE':  2.540,
    'PRO':  1.290,
    'SER': -0.840,
    'THR': -0.410,
    'TRP':  2.560,
    'TYR':  1.630,
    'VAL':  1.730
}

# <NAME>., <NAME>.; Arch. Biochem. Biophys. 161:665-670(1974).

bull ={
    'ALA':  0.610,  
    'ARG':  0.690,  
    'ASN':  0.890,  
    'ASP':  0.610,  
    'CYS':  0.360,  
    'GLN':  0.970,  
    'GLU':  0.510,  
    'GLY':  0.810,  
    'HIS':  0.690,  
    'ILE': -1.450,  
    'LEU': -1.650,  
    'LYS':  0.460,  
    'MET': -0.660,  
    'PHE': -1.520,  
    'PRO': -0.170,  
    'SER':  0.420,  
    'THR':  0.290,  
    'TRP': -1.200,  
    'TYR': -1.430,  
    'VAL': -0.750 
}

# <NAME>.; Biophys J. 47:61-70(1985).

guy ={
    'ALA':  0.100,
    'ARG':  1.910,
    'ASN':  0.480,
    'ASP':  0.780,
    'CYS': -1.420,
    'GLN':  0.950,
    'GLU':  0.830,
    'GLY':  0.330,
    'HIS': -0.500,
    'ILE': -1.130,
    'LEU': -1.180,
    'LYS':  1.400,
    'MET': -1.590,
    'PHE': -2.120,
    'PRO':  0.730,
    'SER':  0.520,
    'THR':  0.070,
    'TRP': -0.510,
    'TYR': -0.210,
    'VAL': -1.270
}

# <NAME>., <NAME>.; Macromolecules 18:534-552(1985).

miyazawa ={
    'ALA':  5.330,
    'ARG':  4.180,
    'ASN':  3.710,
    'ASP':  3.590,
    'CYS':  7.930,
    'GLN':  3.870,
    'GLU':  3.650,
    'GLY':  4.480,
    'HIS':  5.100,
    'ILE':  8.830,
    'LEU':  8.470,
    'LYS':  2.950,
    'MET':  8.950,
    'PHE':  9.030,
    'PRO':  3.870,
    'SER':  4.090,
    'THR':  4.490,
    'TRP':  7.660,
    'TYR':  5.890,
    'VAL':  7.630
}

# <NAME>.; J. Mol. Biol. 200:513-522(1988).

roseman ={
    'ALA':  0.390,
    'ARG': -3.950,
    'ASN': -1.910,
    'ASP': -3.810,
    'CYS':  0.250,
    'GLN': -1.300,
    'GLU': -2.910,
    'GLY':  0.000,
    'HIS': -0.640,
    'ILE':  1.820,
    'LEU':  1.820,
    'LYS': -2.770,
    'MET':  0.960,
    'PHE':  2.270,
    'PRO':  0.990,
    'SER': -1.240,
    'THR': -1.000,
    'TRP':  2.130,
    'TYR':  1.470,
    'VAL':  1.300
}

# <NAME>., <NAME>., <NAME>., <NAME>.; Biochemistry 20:849-855(1981).

wolfenden ={
    'ALA':  1.940,
    'ARG': -19.92,
    'ASN': -9.680,
    'ASP': -10.95,
    'CYS': -1.240,
    'GLN': -9.380,
    'GLU': -10.20,
    'GLY':  2.390,
    'HIS': -10.27,
    'ILE':  2.150,
    'LEU':  2.280,
    'LYS': -9.520,
    'MET': -1.480,
    'PHE': -0.760,
    'PRO':  0.000,
    'SER': -5.060,
    'THR': -4.880,
    'TRP': -5.880,
    'TYR': -6.110,
    'VAL':  1.990
}

# <NAME>.; J. Mol. Biol. 105:1-14(1976).

chothia ={
    'ALA':  0.380,
    'ARG':  0.010,
    'ASN':  0.120,
    'ASP':  0.150,
    'CYS':  0.500,
    'GLN':  0.070,
    'GLU':  0.180,
    'GLY':  0.360,
    'HIS':  0.170,
    'ILE':  0.600,
    'LEU':  0.450,
    'LYS':  0.030,
    'MET':  0.400,
    'PHE':  0.500,
    'PRO':  0.180,
    'SER':  0.220,
    'THR':  0.230,
    'TRP':  0.270,
    'TYR':  0.150,
    'VAL':  0.540
}

# <NAME>., <NAME>.R.; Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828(1981).

hopp ={
    'ALA': -0.500,
    'ARG':  3.000,
    'ASN':  0.200,
    'ASP':  3.000,
    'CYS': -1.000,
    'GLN':  0.200,
    'GLU':  3.000,
    'GLY':  0.000,
    'HIS': -0.500,
    'ILE': -1.800,
    'LEU': -1.800,
    'LYS':  3.000,
    'MET': -1.300,
    'PHE': -2.500,
    'PRO':  0.000,
    'SER':  0.300,
    'THR': -0.400,
    'TRP': -3.400,
    'TYR': -2.300,
    'VAL': -1.500
}

# <NAME>., <NAME>.; Nature 275:673-674(1978).

manavalan ={
    'ALA': 12.970,
    'ARG': 11.720,
    'ASN': 11.420,
    'ASP': 10.850,
    'CYS': 14.630,
    'GLN': 11.760,
    'GLU': 11.890,
    'GLY': 12.430,
    'HIS': 12.160,
    'ILE': 15.670,
    'LEU': 14.900,
    'LYS': 11.360,
    'MET': 14.390,
    'PHE': 14.000,
    'PRO': 11.370,
    'SER': 11.230,
    'THR': 11.690,
    'TRP': 13.930,
    'TYR': 13.420,
    'VAL': 15.710
}

# <NAME>., <NAME>.; Anal. Biochem. 193:72-82(1991).

black ={
    'ALA':  0.616,  
    'ARG':  0.000,  
    'ASN':  0.236,  
    'ASP':  0.028,  
    'CYS':  0.680,  
    'GLN':  0.251,  
    'GLU':  0.043,  
    'GLY':  0.501,  
    'HIS':  0.165,  
    'ILE':  0.943,  
    'LEU':  0.943,  
    'LYS':  0.283,  
    'MET':  0.738,  
    'PHE':  1.000,  
    'PRO':  0.711,  
    'SER':  0.359,  
    'THR':  0.450,  
    'TRP':  0.878,  
    'TYR':  0.880,  
    'VAL':  0.825
}

# <NAME>., <NAME>.; <NAME>. Chem. 18:369-375(1983).

fauchere ={
    'ALA':  0.310,  
    'ARG': -1.010,  
    'ASN': -0.600,  
    'ASP': -0.770,  
    'CYS':  1.540,  
    'GLN': -0.220,  
    'GLU': -0.640,  
    'GLY':  0.000,  
    'HIS':  0.130,  
    'ILE':  1.800,  
    'LEU':  1.700,  
    'LYS': -0.990,  
    'MET':  1.230,  
    'PHE':  1.790,  
    'PRO':  0.720,  
    'SER': -0.040,  
    'THR':  0.260,  
    'TRP':  2.250,  
    'TYR':  0.960,  
    'VAL':  1.220
}

<filename>molsysmt/physchem/groups/hydrophobicity.py
# <NAME>., <NAME>. & <NAME>.; Eur. J. Biochem. 1982, 128, 565–575.

argos={
    'ALA': 0.610,
    'ARG': 0.600,
    'ASN': 0.060,
    'CYS': 1.070,
    'GLN': 0.000,
    'GLU': 0.470,
    'GLY': 0.070,
    'HIS': 0.610,
    'ILE': 2.220,
    'LEU': 1.530,
    'LYS': 1.150,
    'MET': 1.180,
    'PHE': 2.020,
    'PRO': 1.950,
    'SER': 0.050,
    'THR': 0.050,
    'TRP': 2.650,
    'TYR': 1.880,
    'VAL': 1.320 
}

# <NAME>., <NAME>., <NAME>., <NAME>. J. Mol. Biol. 179:125-142(1984).

eisenberg = {
    'ALA':  0.620,
    'ARG': -2.530,
    'ASN': -0.780,
    'CYS':  0.290,
    'GLN': -0.850,
    'GLU': -0.740,
    'GLY':  0.480,
    'HIS': -0.400,
    'ILE':  1.380,
    'LEU':  1.060,
    'LYS': -1.500,
    'MET':  0.640,
    'PHE':  1.190,
    'PRO':  0.120,
    'SER': -0.180,
    'THR': -0.050,
    'TRP':  0.810,
    'TYR':  0.260,
    'VAL':  1.080
}

# <NAME>., <NAME>.; J. Mol. Biol. 171:479-488(1983).

sweet ={
    'ALA': -0.400,
    'ARG': -0.590,
    'ASN': -0.920,
    'ASP': -1.310,
    'CYS':  0.170,
    'GLN': -0.910,
    'GLU': -1.220,
    'GLY': -0.670,
    'HIS': -0.640,
    'ILE':  1.250,
    'LEU':  1.220,
    'LYS': -0.670,
    'MET':  1.020,
    'PHE':  1.920,
    'PRO': -0.490,
    'SER': -0.550,
    'THR': -0.280,
    'TRP':  0.500,
    'TYR':  1.670,
    'VAL':  0.910
}

# <NAME>., <NAME>.; J. Mol. Biol. 157:105-132(1982).

kyte ={
    'ALA':  1.800,
    'ARG': -4.500,
    'ASN': -3.500,
    'ASP': -3.500,
    'CYS':  2.500,
    'GLN': -3.500,
    'GLU': -3.500,
    'GLY': -0.400,
    'HIS': -3.200,
    'ILE':  4.500,
    'LEU':  3.800,
    'LYS': -3.900,
    'MET':  1.900,
    'PHE':  2.800,
    'PRO': -1.600,
    'SER': -0.800,
    'THR': -0.700,
    'TRP': -0.900,
    'TYR': -1.300,
    'VAL':  4.200
}

# <NAME>., <NAME>.; Proteins: Structure, Function and Genetics 2:130-152(1987).

abraham ={
    'ALA':  0.440,
    'ARG': -2.420,
    'ASN': -1.320,
    'ASP': -0.310,
    'CYS':  0.580,
    'GLN': -0.710,
    'GLU': -0.340,
    'GLY':  0.000,
    'HIS': -0.010,
    'ILE':  2.460,
    'LEU':  2.460,
    'LYS': -2.450,
    'MET':  1.100,
    'PHE':  2.540,
    'PRO':  1.290,
    'SER': -0.840,
    'THR': -0.410,
    'TRP':  2.560,
    'TYR':  1.630,
    'VAL':  1.730
}

# <NAME>., <NAME>.; Arch. Biochem. Biophys. 161:665-670(1974).

bull ={
    'ALA':  0.610,  
    'ARG':  0.690,  
    'ASN':  0.890,  
    'ASP':  0.610,  
    'CYS':  0.360,  
    'GLN':  0.970,  
    'GLU':  0.510,  
    'GLY':  0.810,  
    'HIS':  0.690,  
    'ILE': -1.450,  
    'LEU': -1.650,  
    'LYS':  0.460,  
    'MET': -0.660,  
    'PHE': -1.520,  
    'PRO': -0.170,  
    'SER':  0.420,  
    'THR':  0.290,  
    'TRP': -1.200,  
    'TYR': -1.430,  
    'VAL': -0.750 
}

# <NAME>.; Biophys J. 47:61-70(1985).

guy ={
    'ALA':  0.100,
    'ARG':  1.910,
    'ASN':  0.480,
    'ASP':  0.780,
    'CYS': -1.420,
    'GLN':  0.950,
    'GLU':  0.830,
    'GLY':  0.330,
    'HIS': -0.500,
    'ILE': -1.130,
    'LEU': -1.180,
    'LYS':  1.400,
    'MET': -1.590,
    'PHE': -2.120,
    'PRO':  0.730,
    'SER':  0.520,
    'THR':  0.070,
    'TRP': -0.510,
    'TYR': -0.210,
    'VAL': -1.270
}

# <NAME>., <NAME>.; Macromolecules 18:534-552(1985).

miyazawa ={
    'ALA':  5.330,
    'ARG':  4.180,
    'ASN':  3.710,
    'ASP':  3.590,
    'CYS':  7.930,
    'GLN':  3.870,
    'GLU':  3.650,
    'GLY':  4.480,
    'HIS':  5.100,
    'ILE':  8.830,
    'LEU':  8.470,
    'LYS':  2.950,
    'MET':  8.950,
    'PHE':  9.030,
    'PRO':  3.870,
    'SER':  4.090,
    'THR':  4.490,
    'TRP':  7.660,
    'TYR':  5.890,
    'VAL':  7.630
}

# <NAME>.; J. Mol. Biol. 200:513-522(1988).

roseman ={
    'ALA':  0.390,
    'ARG': -3.950,
    'ASN': -1.910,
    'ASP': -3.810,
    'CYS':  0.250,
    'GLN': -1.300,
    'GLU': -2.910,
    'GLY':  0.000,
    'HIS': -0.640,
    'ILE':  1.820,
    'LEU':  1.820,
    'LYS': -2.770,
    'MET':  0.960,
    'PHE':  2.270,
    'PRO':  0.990,
    'SER': -1.240,
    'THR': -1.000,
    'TRP':  2.130,
    'TYR':  1.470,
    'VAL':  1.300
}

# <NAME>., <NAME>., <NAME>., <NAME>.; Biochemistry 20:849-855(1981).

wolfenden ={
    'ALA':  1.940,
    'ARG': -19.92,
    'ASN': -9.680,
    'ASP': -10.95,
    'CYS': -1.240,
    'GLN': -9.380,
    'GLU': -10.20,
    'GLY':  2.390,
    'HIS': -10.27,
    'ILE':  2.150,
    'LEU':  2.280,
    'LYS': -9.520,
    'MET': -1.480,
    'PHE': -0.760,
    'PRO':  0.000,
    'SER': -5.060,
    'THR': -4.880,
    'TRP': -5.880,
    'TYR': -6.110,
    'VAL':  1.990
}

# <NAME>.; J. Mol. Biol. 105:1-14(1976).

chothia ={
    'ALA':  0.380,
    'ARG':  0.010,
    'ASN':  0.120,
    'ASP':  0.150,
    'CYS':  0.500,
    'GLN':  0.070,
    'GLU':  0.180,
    'GLY':  0.360,
    'HIS':  0.170,
    'ILE':  0.600,
    'LEU':  0.450,
    'LYS':  0.030,
    'MET':  0.400,
    'PHE':  0.500,
    'PRO':  0.180,
    'SER':  0.220,
    'THR':  0.230,
    'TRP':  0.270,
    'TYR':  0.150,
    'VAL':  0.540
}

# <NAME>., <NAME>.R.; Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828(1981).

hopp ={
    'ALA': -0.500,
    'ARG':  3.000,
    'ASN':  0.200,
    'ASP':  3.000,
    'CYS': -1.000,
    'GLN':  0.200,
    'GLU':  3.000,
    'GLY':  0.000,
    'HIS': -0.500,
    'ILE': -1.800,
    'LEU': -1.800,
    'LYS':  3.000,
    'MET': -1.300,
    'PHE': -2.500,
    'PRO':  0.000,
    'SER':  0.300,
    'THR': -0.400,
    'TRP': -3.400,
    'TYR': -2.300,
    'VAL': -1.500
}

# <NAME>., <NAME>.; Nature 275:673-674(1978).

manavalan ={
    'ALA': 12.970,
    'ARG': 11.720,
    'ASN': 11.420,
    'ASP': 10.850,
    'CYS': 14.630,
    'GLN': 11.760,
    'GLU': 11.890,
    'GLY': 12.430,
    'HIS': 12.160,
    'ILE': 15.670,
    'LEU': 14.900,
    'LYS': 11.360,
    'MET': 14.390,
    'PHE': 14.000,
    'PRO': 11.370,
    'SER': 11.230,
    'THR': 11.690,
    'TRP': 13.930,
    'TYR': 13.420,
    'VAL': 15.710
}

# <NAME>., <NAME>.; Anal. Biochem. 193:72-82(1991).

black ={
    'ALA':  0.616,  
    'ARG':  0.000,  
    'ASN':  0.236,  
    'ASP':  0.028,  
    'CYS':  0.680,  
    'GLN':  0.251,  
    'GLU':  0.043,  
    'GLY':  0.501,  
    'HIS':  0.165,  
    'ILE':  0.943,  
    'LEU':  0.943,  
    'LYS':  0.283,  
    'MET':  0.738,  
    'PHE':  1.000,  
    'PRO':  0.711,  
    'SER':  0.359,  
    'THR':  0.450,  
    'TRP':  0.878,  
    'TYR':  0.880,  
    'VAL':  0.825
}

# <NAME>., <NAME>.; <NAME>. Chem. 18:369-375(1983).

fauchere ={
    'ALA':  0.310,  
    'ARG': -1.010,  
    'ASN': -0.600,  
    'ASP': -0.770,  
    'CYS':  1.540,  
    'GLN': -0.220,  
    'GLU': -0.640,  
    'GLY':  0.000,  
    'HIS':  0.130,  
    'ILE':  1.800,  
    'LEU':  1.700,  
    'LYS': -0.990,  
    'MET':  1.230,  
    'PHE':  1.790,  
    'PRO':  0.720,  
    'SER': -0.040,  
    'THR':  0.260,  
    'TRP':  2.250,  
    'TYR':  0.960,  
    'VAL':  1.220
}

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