<filename>glycan_profiling/composition_distribution_model/__init__.py
from glycan_profiling.composition_distribution_model.constants import (
    DEFAULT_LAPLACIAN_REGULARIZATION,
    DEFAULT_RHO,
    RESET_THRESHOLD_VALUE,
    NORMALIZATION)

from glycan_profiling.composition_distribution_model.graph import (
    laplacian_matrix,
    adjacency_matrix,
    degree_matrix,
    weighted_laplacian_matrix,
    weighted_adjacency_matrix,
    weighted_degree_matrix,
    BlockLaplacian,
    network_indices,
    scale_network,
    assign_network,
    make_blocks)

from glycan_profiling.composition_distribution_model.laplacian_smoothing import (
    LaplacianSmoothingModel,
    ProportionMatrixNormalization,
    GroupBelongingnessMatrix,
    MatrixEditIndex,
    MatrixEditInstruction,
    BelongingnessMatrixPatcher)

from glycan_profiling.composition_distribution_model.grid_search import (
    NetworkReduction,
    NetworkTrimmingSearchSolution,
    GridSearchSolution,
    GridPointSolution,
    ThresholdSelectionGridSearch)


from glycan_profiling.composition_distribution_model.observation import (
    GlycanCompositionSolutionRecord,
    VariableObservationAggregation,
    AbundanceWeightedObservationAggregation,
    ObservationWeightState)


from glycan_profiling.composition_distribution_model.glycome_network_smoothing import (
    GlycomeModel,
    smooth_network)


from glycan_profiling.composition_distribution_model.utils import display_table


__all__ = [
    "DEFAULT_LAPLACIAN_REGULARIZATION",
    "DEFAULT_RHO",
    "RESET_THRESHOLD_VALUE",
    "NORMALIZATION",
    "laplacian_matrix",
    "adjacency_matrix",
    "degree_matrix",
    "weighted_laplacian_matrix",
    "weighted_adjacency_matrix",
    "weighted_degree_matrix",
    "BlockLaplacian",
    "network_indices",
    "scale_network",
    "assign_network",
    "make_blocks",
    "LaplacianSmoothingModel",
    "ProportionMatrixNormalization",
    "GroupBelongingnessMatrix",
    "MatrixEditIndex",
    "MatrixEditInstruction",
    "BelongingnessMatrixPatcher",
    "NetworkReduction",
    "NetworkTrimmingSearchSolution",
    "GridSearchSolution",
    "GridPointSolution",
    "ThresholdSelectionGridSearch",
    "GlycomeModel",
    "GlycanCompositionSolutionRecord",
    "VariableObservationAggregation",
    "AbundanceWeightedObservationAggregation",
    "NeighborhoodPrior",
    "smooth_network",
    "display_table",
    "ObservationWeightState"
]

<filename>glycan_profiling/composition_distribution_model/__init__.py
from glycan_profiling.composition_distribution_model.constants import (
    DEFAULT_LAPLACIAN_REGULARIZATION,
    DEFAULT_RHO,
    RESET_THRESHOLD_VALUE,
    NORMALIZATION)

from glycan_profiling.composition_distribution_model.graph import (
    laplacian_matrix,
    adjacency_matrix,
    degree_matrix,
    weighted_laplacian_matrix,
    weighted_adjacency_matrix,
    weighted_degree_matrix,
    BlockLaplacian,
    network_indices,
    scale_network,
    assign_network,
    make_blocks)

from glycan_profiling.composition_distribution_model.laplacian_smoothing import (
    LaplacianSmoothingModel,
    ProportionMatrixNormalization,
    GroupBelongingnessMatrix,
    MatrixEditIndex,
    MatrixEditInstruction,
    BelongingnessMatrixPatcher)

from glycan_profiling.composition_distribution_model.grid_search import (
    NetworkReduction,
    NetworkTrimmingSearchSolution,
    GridSearchSolution,
    GridPointSolution,
    ThresholdSelectionGridSearch)


from glycan_profiling.composition_distribution_model.observation import (
    GlycanCompositionSolutionRecord,
    VariableObservationAggregation,
    AbundanceWeightedObservationAggregation,
    ObservationWeightState)


from glycan_profiling.composition_distribution_model.glycome_network_smoothing import (
    GlycomeModel,
    smooth_network)


from glycan_profiling.composition_distribution_model.utils import display_table


__all__ = [
    "DEFAULT_LAPLACIAN_REGULARIZATION",
    "DEFAULT_RHO",
    "RESET_THRESHOLD_VALUE",
    "NORMALIZATION",
    "laplacian_matrix",
    "adjacency_matrix",
    "degree_matrix",
    "weighted_laplacian_matrix",
    "weighted_adjacency_matrix",
    "weighted_degree_matrix",
    "BlockLaplacian",
    "network_indices",
    "scale_network",
    "assign_network",
    "make_blocks",
    "LaplacianSmoothingModel",
    "ProportionMatrixNormalization",
    "GroupBelongingnessMatrix",
    "MatrixEditIndex",
    "MatrixEditInstruction",
    "BelongingnessMatrixPatcher",
    "NetworkReduction",
    "NetworkTrimmingSearchSolution",
    "GridSearchSolution",
    "GridPointSolution",
    "ThresholdSelectionGridSearch",
    "GlycomeModel",
    "GlycanCompositionSolutionRecord",
    "VariableObservationAggregation",
    "AbundanceWeightedObservationAggregation",
    "NeighborhoodPrior",
    "smooth_network",
    "display_table",
    "ObservationWeightState"
]
