#vocabulary_locations.py
#Copyright (c) 2020 <NAME> <NAME>

#MIT License

#Permission is hereby granted, free of charge, to any person obtaining a copy
#of this software and associated documentation files (the "Software"), to deal
#in the Software without restriction, including without limitation the rights
#to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
#copies of the Software, and to permit persons to whom the Software is
#furnished to do so, subject to the following conditions:

#The above copyright notice and this permission notice shall be included in all
#copies or substantial portions of the Software.

#THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
#IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
#FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
#AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
#LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
#OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
#SOFTWARE

#######################
# Lung Location Terms #---------------------------------------------------------
#######################
#Lobes comment: the unbreakable unit is 'left upper' and not 'upper lobe'
#because we do not want to say all lobes are bad in a sentence that has a list,
#e.g. 'atelectasis in the left upper, right middle, and left lower lobes'
ALL_LOBES = ['all lobes', 'all the lobes','all of the lobes']

UPPER_GENERAL = ALL_LOBES + ['apices','upper lobes','superior lobes','biapical',
                             'bilateral upper lobe','bilateral apical']
LEFT_UPPER = UPPER_GENERAL + ['left upper','left superior','left apex',
                              'left apical','left lung apex','superior left lung',
                              'upper left lung']
RIGHT_UPPER = UPPER_GENERAL + ['right upper','right superior','right apex',
                               'right apical','right lung apex','superior right lung',
                               'upper right lung']

MIDDLE_GENERAL = ALL_LOBES + ['middle lobes']
LEFT_MIDDLE = MIDDLE_GENERAL + ['left middle','lingula'] #lingula includes lingular
RIGHT_MIDDLE = MIDDLE_GENERAL + ['right middle','right horizontal fissure',
                                 'right minor fissure']

LOWER_GENERAL = ALL_LOBES + ['bases','lower lobes','inferior lobes','bibasilar',
                 'bilateral lower lobe','bilateral basilar']
LEFT_LOWER = LOWER_GENERAL + ['left lower','left inferior','left base',
                              'left basilar','left lung base','inferior left lung',
                              'lower left lung','left oblique fissure',
                              'left major fissure']
RIGHT_LOWER = LOWER_GENERAL + ['right lower','right inferior','right base',
                               'right basilar','right lung base','inferior right lung',
                               'lower right lung','right oblique fissure',
                               'right major fissure']

#EACH LUNG:
RIGHT_LUNG = ['bilateral']+RIGHT_UPPER+RIGHT_MIDDLE+RIGHT_LOWER
LEFT_LUNG = ['bilateral']+LEFT_UPPER+LEFT_MIDDLE+LEFT_LOWER

#GENERAL:
LUNG_GENERAL = ['lung','lobe','pulmonary','lingula','pleura','basilar','apical',
                'fissure','fissural'] #fissural captures fissural and perifissural

#EITHER LUNG:
LUNG_TERMS = RIGHT_LUNG+LEFT_LUNG+LUNG_GENERAL

#EXCLUDE_NONLUNG is for locations: specifically, non-lung locations
EXCLUDE_NONLUNG = ['liver','hepatic','thyroid','caudate','quadrate','pulmonary artery',
           'pulmonary vein','kidney','renal','nephr','gyne','spleen','splenic',
           'humer',' rib','breast','quadrant']
    #quadrant is needed to exclude e.g. 'left upper quadrant' (of the abdomen)
    #'gyne' to exclude 'bilateral gynecomastia'; nephr for 'bilateral nephrolithiasis'

#LOCATIONS:
LUNG_LOCATION_TERMS = {'left_upper':{'Any':LEFT_UPPER,'Term1':['left'],'Term2':['apical'],'Exclude':EXCLUDE_NONLUNG},
        'left_mid':{'Any':LEFT_MIDDLE, 'Exclude':EXCLUDE_NONLUNG},
        'left_lower':{'Any':LEFT_LOWER, 'Term1':['left'], 'Term2':['basilar'], 'Exclude':EXCLUDE_NONLUNG},
        'right_upper':{'Any':RIGHT_UPPER,'Term1':['right'],'Term2':['apical'],'Exclude':EXCLUDE_NONLUNG},
        'right_mid':{'Any':RIGHT_MIDDLE, 'Exclude':EXCLUDE_NONLUNG},
        'right_lower':{'Any':RIGHT_LOWER, 'Term1':['right'],'Term2':['basilar'],'Exclude':EXCLUDE_NONLUNG},
        'right_lung':{'Any':RIGHT_LUNG,'Term1':['right'],'Term2':LUNG_GENERAL,'Exclude':EXCLUDE_NONLUNG}, 
        'left_lung':{'Any':LEFT_LUNG,'Term1':['left'],'Term2':LUNG_GENERAL,'Exclude':EXCLUDE_NONLUNG},
        'lung':{'Any':LUNG_TERMS,'Exclude':EXCLUDE_NONLUNG},
        'airways':{'Any':['trache','bronchi','mainstem','bronchus','central airway',' carina'],'Exclude':EXCLUDE_NONLUNG}
        #trache = trachea, tracheostomy. 'bronchi' = bronchi, bronchioles
    }
#vocabulary_locations.py
#Copyright (c) 2020 <NAME> <NAME>

#MIT License

#Permission is hereby granted, free of charge, to any person obtaining a copy
#of this software and associated documentation files (the "Software"), to deal
#in the Software without restriction, including without limitation the rights
#to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
#copies of the Software, and to permit persons to whom the Software is
#furnished to do so, subject to the following conditions:

#The above copyright notice and this permission notice shall be included in all
#copies or substantial portions of the Software.

#THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
#IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
#FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
#AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
#LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
#OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
#SOFTWARE

#######################
# Lung Location Terms #---------------------------------------------------------
#######################
#Lobes comment: the unbreakable unit is 'left upper' and not 'upper lobe'
#because we do not want to say all lobes are bad in a sentence that has a list,
#e.g. 'atelectasis in the left upper, right middle, and left lower lobes'
ALL_LOBES = ['all lobes', 'all the lobes','all of the lobes']

UPPER_GENERAL = ALL_LOBES + ['apices','upper lobes','superior lobes','biapical',
                             'bilateral upper lobe','bilateral apical']
LEFT_UPPER = UPPER_GENERAL + ['left upper','left superior','left apex',
                              'left apical','left lung apex','superior left lung',
                              'upper left lung']
RIGHT_UPPER = UPPER_GENERAL + ['right upper','right superior','right apex',
                               'right apical','right lung apex','superior right lung',
                               'upper right lung']

MIDDLE_GENERAL = ALL_LOBES + ['middle lobes']
LEFT_MIDDLE = MIDDLE_GENERAL + ['left middle','lingula'] #lingula includes lingular
RIGHT_MIDDLE = MIDDLE_GENERAL + ['right middle','right horizontal fissure',
                                 'right minor fissure']

LOWER_GENERAL = ALL_LOBES + ['bases','lower lobes','inferior lobes','bibasilar',
                 'bilateral lower lobe','bilateral basilar']
LEFT_LOWER = LOWER_GENERAL + ['left lower','left inferior','left base',
                              'left basilar','left lung base','inferior left lung',
                              'lower left lung','left oblique fissure',
                              'left major fissure']
RIGHT_LOWER = LOWER_GENERAL + ['right lower','right inferior','right base',
                               'right basilar','right lung base','inferior right lung',
                               'lower right lung','right oblique fissure',
                               'right major fissure']

#EACH LUNG:
RIGHT_LUNG = ['bilateral']+RIGHT_UPPER+RIGHT_MIDDLE+RIGHT_LOWER
LEFT_LUNG = ['bilateral']+LEFT_UPPER+LEFT_MIDDLE+LEFT_LOWER

#GENERAL:
LUNG_GENERAL = ['lung','lobe','pulmonary','lingula','pleura','basilar','apical',
                'fissure','fissural'] #fissural captures fissural and perifissural

#EITHER LUNG:
LUNG_TERMS = RIGHT_LUNG+LEFT_LUNG+LUNG_GENERAL

#EXCLUDE_NONLUNG is for locations: specifically, non-lung locations
EXCLUDE_NONLUNG = ['liver','hepatic','thyroid','caudate','quadrate','pulmonary artery',
           'pulmonary vein','kidney','renal','nephr','gyne','spleen','splenic',
           'humer',' rib','breast','quadrant']
    #quadrant is needed to exclude e.g. 'left upper quadrant' (of the abdomen)
    #'gyne' to exclude 'bilateral gynecomastia'; nephr for 'bilateral nephrolithiasis'

#LOCATIONS:
LUNG_LOCATION_TERMS = {'left_upper':{'Any':LEFT_UPPER,'Term1':['left'],'Term2':['apical'],'Exclude':EXCLUDE_NONLUNG},
        'left_mid':{'Any':LEFT_MIDDLE, 'Exclude':EXCLUDE_NONLUNG},
        'left_lower':{'Any':LEFT_LOWER, 'Term1':['left'], 'Term2':['basilar'], 'Exclude':EXCLUDE_NONLUNG},
        'right_upper':{'Any':RIGHT_UPPER,'Term1':['right'],'Term2':['apical'],'Exclude':EXCLUDE_NONLUNG},
        'right_mid':{'Any':RIGHT_MIDDLE, 'Exclude':EXCLUDE_NONLUNG},
        'right_lower':{'Any':RIGHT_LOWER, 'Term1':['right'],'Term2':['basilar'],'Exclude':EXCLUDE_NONLUNG},
        'right_lung':{'Any':RIGHT_LUNG,'Term1':['right'],'Term2':LUNG_GENERAL,'Exclude':EXCLUDE_NONLUNG}, 
        'left_lung':{'Any':LEFT_LUNG,'Term1':['left'],'Term2':LUNG_GENERAL,'Exclude':EXCLUDE_NONLUNG},
        'lung':{'Any':LUNG_TERMS,'Exclude':EXCLUDE_NONLUNG},
        'airways':{'Any':['trache','bronchi','mainstem','bronchus','central airway',' carina'],'Exclude':EXCLUDE_NONLUNG}
        #trache = trachea, tracheostomy. 'bronchi' = bronchi, bronchioles
    }
#vocabulary_locations.py #Copyright (c) 2020 <NAME> <NAME> #MIT License #Permission is hereby granted, free of charge, to any person obtaining a copy #of this software and associated documentation files (the "Software"), to deal #in the Software without restriction, including without limitation the rights #to use, copy, modify, merge, publish, distribute, sublicense, and/or sell #copies of the Software, and to permit persons to whom the Software is #furnished to do so, subject to the following conditions: #The above copyright notice and this permission notice shall be included in all #copies or substantial portions of the Software. #THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR #IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, #FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE #AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER #LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, #OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE #SOFTWARE ####################### # Lung Location Terms #--------------------------------------------------------- ####################### #Lobes comment: the unbreakable unit is 'left upper' and not 'upper lobe' #because we do not want to say all lobes are bad in a sentence that has a list, #e.g. 'atelectasis in the left upper, right middle, and left lower lobes' #lingula includes lingular #EACH LUNG: #GENERAL: #fissural captures fissural and perifissural #EITHER LUNG: #EXCLUDE_NONLUNG is for locations: specifically, non-lung locations #quadrant is needed to exclude e.g. 'left upper quadrant' (of the abdomen) #'gyne' to exclude 'bilateral gynecomastia'; nephr for 'bilateral nephrolithiasis' #LOCATIONS: #trache = trachea, tracheostomy. 'bronchi' = bronchi, bronchioles