from .annotation import Annotation
from .annotation import TargetAnnotation
from .annotation import annotate_bed

from .targets import TargetFiles
from .targets import TargetDatabase
from .targets import get_picard_header
from .targets import boolean_to_number

from .parsing import samplesheet_to_sample_genesis
from .parsing import parse_samplesheet_for_pipeline
from .parsing import get_rs_gpos_dict
from .parsing import parse_sangers
from .parsing import parse_taqman
from .parsing import parse_ngssnpcheck
from .parsing import compare_snpchecks
from .parsing import print_extra_ngscalls
from .parsing import read_summary
from .parsing import readmetrics
from .parsing import parse_bed_to_loci
from .parsing import calc_perc_target_covered
from .parsing import annotate_callables
from .parsing import get_basecounts
from .parsing import get_base_count_filelist
from .parsing import standaardfragmenten_dict_sample
from .parsing import standaardfragmenten_naar_df
from .parsing import get_fragment_list
from .parsing import merge_standaardfrags
from .parsing import get_pakketten
from .parsing import get_captures
from .parsing import mean_doc
from .parsing import RiskScore
from .parsing import get_file_locations

from .pipeline_stuff import SampleSheet
from .pipeline_stuff import TargetDBCreator
from .pipeline_stuff import MetricsDBcreator
from .pipeline_stuff import MetricsDBReader
from .pipeline_stuff import perc_target_covered2db
from .pipeline_stuff import summary2db
from .pipeline_stuff import metrics2db
from .pipeline_stuff import samplesheetinfo2db
from .pipeline_stuff import sangers2db
from .pipeline_stuff import sample_in_db
from .pipeline_stuff import base_perc_reads2db
from .pipeline_stuff import get_baseperc_reads_serie
from .pipeline_stuff import get_df_baseperc_reads_serie
from .pipeline_stuff import get_sangers_serie_from_db
from .pipeline_stuff import sangerdb_to_dataframe
from .pipeline_stuff import combine_all_sangerdb_to_df
from .pipeline_stuff import get_sangerfrag_min_max
from .pipeline_stuff import group_samples_by_sanger
from .pipeline_stuff import expand_samples
from .pipeline_stuff import parse_sangers_for_seriereport
from .pipeline_stuff import snpcheck2db
from .pipeline_stuff import get_snpcheck_serie
from .pipeline_stuff import compare_snpchecks_serie
from .pipeline_stuff import mean_std_2db
from .pipeline_stuff import riskscore_and_genotypes_2db
from .pipeline_stuff import get_patient_info
from .pipeline_stuff import SexForCNV
from .pipeline_stuff import run_command
from .pipeline_stuff import create_dir
from .pipeline_stuff import create_empty_excelfile
from .pipeline_stuff import read_config_json
from .pipeline_stuff import move_data_to_diagnostic_tree

from .mosaic import Mosaic
from .mosaic import parse_bed
from .mosaic import good_alignment
from .mosaic import cigar_has_insertion
from .mosaic import parse_cigartuple
from .mosaic import pos_in_interval
from .mosaic import get_indel_dicts
from .mosaic import parse_doc
from .mosaic import parse_vcf
from .mosaic import split_data_for_database
from .mosaic import get_mean
from .mosaic import bedfile_to_locilist
from .mosaic import add_sampledata_to_database
from .mosaic import get_data_to_plot
from .mosaic import plot_data
from .mosaic import parse_doc_for_literature_vars
from .mosaic import get_known_mosaic_positions

from .annotation import Annotation
from .annotation import TargetAnnotation
from .annotation import annotate_bed

from .targets import TargetFiles
from .targets import TargetDatabase
from .targets import get_picard_header
from .targets import boolean_to_number

from .parsing import samplesheet_to_sample_genesis
from .parsing import parse_samplesheet_for_pipeline
from .parsing import get_rs_gpos_dict
from .parsing import parse_sangers
from .parsing import parse_taqman
from .parsing import parse_ngssnpcheck
from .parsing import compare_snpchecks
from .parsing import print_extra_ngscalls
from .parsing import read_summary
from .parsing import readmetrics
from .parsing import parse_bed_to_loci
from .parsing import calc_perc_target_covered
from .parsing import annotate_callables
from .parsing import get_basecounts
from .parsing import get_base_count_filelist
from .parsing import standaardfragmenten_dict_sample
from .parsing import standaardfragmenten_naar_df
from .parsing import get_fragment_list
from .parsing import merge_standaardfrags
from .parsing import get_pakketten
from .parsing import get_captures
from .parsing import mean_doc
from .parsing import RiskScore
from .parsing import get_file_locations

from .pipeline_stuff import SampleSheet
from .pipeline_stuff import TargetDBCreator
from .pipeline_stuff import MetricsDBcreator
from .pipeline_stuff import MetricsDBReader
from .pipeline_stuff import perc_target_covered2db
from .pipeline_stuff import summary2db
from .pipeline_stuff import metrics2db
from .pipeline_stuff import samplesheetinfo2db
from .pipeline_stuff import sangers2db
from .pipeline_stuff import sample_in_db
from .pipeline_stuff import base_perc_reads2db
from .pipeline_stuff import get_baseperc_reads_serie
from .pipeline_stuff import get_df_baseperc_reads_serie
from .pipeline_stuff import get_sangers_serie_from_db
from .pipeline_stuff import sangerdb_to_dataframe
from .pipeline_stuff import combine_all_sangerdb_to_df
from .pipeline_stuff import get_sangerfrag_min_max
from .pipeline_stuff import group_samples_by_sanger
from .pipeline_stuff import expand_samples
from .pipeline_stuff import parse_sangers_for_seriereport
from .pipeline_stuff import snpcheck2db
from .pipeline_stuff import get_snpcheck_serie
from .pipeline_stuff import compare_snpchecks_serie
from .pipeline_stuff import mean_std_2db
from .pipeline_stuff import riskscore_and_genotypes_2db
from .pipeline_stuff import get_patient_info
from .pipeline_stuff import SexForCNV
from .pipeline_stuff import run_command
from .pipeline_stuff import create_dir
from .pipeline_stuff import create_empty_excelfile
from .pipeline_stuff import read_config_json
from .pipeline_stuff import move_data_to_diagnostic_tree

from .mosaic import Mosaic
from .mosaic import parse_bed
from .mosaic import good_alignment
from .mosaic import cigar_has_insertion
from .mosaic import parse_cigartuple
from .mosaic import pos_in_interval
from .mosaic import get_indel_dicts
from .mosaic import parse_doc
from .mosaic import parse_vcf
from .mosaic import split_data_for_database
from .mosaic import get_mean
from .mosaic import bedfile_to_locilist
from .mosaic import add_sampledata_to_database
from .mosaic import get_data_to_plot
from .mosaic import plot_data
from .mosaic import parse_doc_for_literature_vars
from .mosaic import get_known_mosaic_positions
