Commit
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5a37558
1
Parent(s):
4553fbd
feat: Add deepstarr dataset
Browse files
nucleotide_transformer_downstream_tasks_multilabel.py
CHANGED
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@@ -41,13 +41,15 @@ _HOMEPAGE = "https://github.com/instadeepai/nucleotide-transformer"
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_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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-
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class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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"""BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
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def __init__(
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"""BuilderConfig downstream tasks dataset.
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Args:
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task (:obj:`str`): Task name.
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@@ -60,14 +62,17 @@ class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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)
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self.task = task
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self.num_labels = num_labels
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class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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BUILDER_CONFIGS = [
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NucleotideTransformerDownstreamTasksConfig(
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]
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DEFAULT_CONFIG_NAME = "deepstarr"
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@@ -77,7 +82,7 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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"name": datasets.Value("string"),
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}
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labels_dict = {
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f"label_{i}": datasets.Value(
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for i in range(self.config.num_labels)
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}
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features_dict.update(labels_dict)
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_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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_TASKS_NUM_LABELS_DTYPE = [("deepstarr", 6, "float32")]
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class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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"""BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
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def __init__(
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self, *args, task: str, num_labels=int, dtype: str = "int32", **kwargs
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):
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"""BuilderConfig downstream tasks dataset.
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Args:
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task (:obj:`str`): Task name.
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)
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self.task = task
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self.num_labels = num_labels
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self.dtype = dtype
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class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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BUILDER_CONFIGS = [
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NucleotideTransformerDownstreamTasksConfig(
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task=task, num_labels=num_labels, dtype=dtype
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)
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for (task, num_labels, dtype) in _TASKS_NUM_LABELS_DTYPE
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]
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DEFAULT_CONFIG_NAME = "deepstarr"
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"name": datasets.Value("string"),
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}
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labels_dict = {
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f"label_{i}": datasets.Value(self.config.dtype)
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for i in range(self.config.num_labels)
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}
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features_dict.update(labels_dict)
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