user17033: I was trying to switch to Atmel Studio for programming my Due project since it became more and more complex.
I managed to use the Arduino Importer Wizard to load a blink.ino file and included all the requested libraries more or less my hand that were marked as missing during compiling.
Now the compiling kind of works, but I still get this error:
Error       (inkerScript): No such file or directory    ECU arm-none-eabi-g++.exe   0

The (inkerScript): part is no typo. It is really like this in the console.
Taking a look in the Toolchain Options I have these settings (which I am not able to edit):

Going into the Miscellaneous Part of the Options I can edit these fields:

By editing the Linker Flags field, I can change the error message from (inkerScript): No such file or directory to e.g. HelloWorld: No such file or directory.
Is there anything wrong with my options? What is the correct setting for "Linker Flags" and what are they doing? 
Unfortunately I am not a pro with C++ Compiling / Linker Errors / Settings.
Thanks.

user18492: I just encountered this.  After looking at other examples in the compiler command line options, it looks like it should be $(LinkerScript) instead of ($LinkerScript).
In Atmel Studio, go to project properties, toolchain, ARM/GNU Linker, Miscellaneous to find the option to change.

17033: <p>I was trying to switch to Atmel Studio for programming my Due project since it became more and more complex.
I managed to use the Arduino Importer Wizard to load a blink.ino file and included all the requested libraries more or less my hand that were marked as missing during compiling.
Now the compiling kind of works, but I still get this error:</p>

<pre><code>Error       (inkerScript): No such file or directory    ECU arm-none-eabi-g++.exe   0
</code></pre>

<p>The <code>(inkerScript):</code> part is no typo. It is really like this in the console.
Taking a look in the Toolchain Options I have these settings (which I am not able to edit):
<a href="https://i.stack.imgur.com/Jx8rV.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/Jx8rV.png" alt="Linker Options"></a></p>

<p>Going into the Miscellaneous Part of the Options I can edit these fields:
<a href="https://i.stack.imgur.com/GJijt.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/GJijt.png" alt="Miscellaneous Options"></a></p>

<p>By editing the Linker Flags field, I can change the error message from <code>(inkerScript): No such file or directory</code> to e.g. <code>HelloWorld: No such file or directory</code>.</p>

<p>Is there anything wrong with my options? What is the correct setting for "Linker Flags" and what are they doing? </p>

<p>Unfortunately I am not a pro with C++ Compiling / Linker Errors / Settings.</p>

<p>Thanks.</p>
 18492: <p>I just encountered this.  After looking at other examples in the compiler command line options, it looks like it should be $(LinkerScript) instead of ($LinkerScript).</p>

<p>In Atmel Studio, go to project properties, toolchain, ARM/GNU Linker, Miscellaneous to find the option to change.</p>
