user30792: I put a LED into 3.3V of the arduino and Ground, and it blew my LED violently, smoke was everyone, the whole half top of the led blew up across my room.
However, when i program the arduino with Pin13 HIGH per say, it will not blow up. Will be lit brightly. (Both using no resistors). However, if I plug mroe stuff in the board, for example, a lcd screen, rotary switches, and pushbuttons for my program, the LED dims to such a low brightness I cannot see.
Why is this? How Do I fix it?
Schematic:

Note, that i am using a mega, and some of it is slightly changed, and LED is being powered from A0 (Or Pin 54 on Mega)

user3917: 
“I put a LED into 3.3V of the arduino and Ground, and it blew my LED violently ... the whole half top of the led blew up ...” – 

Current through the LED was so high that a tiny interconnect wire blew up.  In typical LEDs, an almost-invisible wire connects from the anode lead frame to the LED chip on the cathode lead frame (at left and right, respectively, on each of the three lead frames pictured below).  That wire acted like a fuse and blew up.  With such a fine wire, it doesn't take particularly much current to pop it. 
The diagram below shows how current through an LED increases exponentially as voltage across it rises.  The diagram is from "mikesflightdeck.com LED dimmer" webpage, a page which may be useful in helping you understand why LEDs need series resistors or some other form of current limiting, eg a constant-current circuit.

When an LED is powered by an Arduino port output, the port's internal resistance is enough to limit LED current to non-lethal (to the LED) values.  (However, the port itself may get burned out by delivering current beyond its 40 mA absolute max current rating.)

“However, if I plug more stuff in the board ... the LED dims to such a low brightness ...” – 

The stuff being plugged in apparently is drawing enough current to drop the system voltage.  This can happen if your Arduino is powered by a low-power source like a 9-volt transistor-radio battery, or a laptop USB port that can't deliver the 500 mA that a standard USB port is rated at.
If either of those causes is behind the problem, use an external power supply, plugged into the power jack or connected to Vin and Ground.  You can buy suitable “wall-warts” online, or at an electronics store, or quite cheaply at second-hand or thrift shops.
But if neither of those causes is the problem, you may have a clone of an Arduino using substandard parts, and unable to deliver reasonable current through its regulators.  In this case, find a well-regulated 5 V supply to connect between +5V and Ground or to the USB's power pins.  Such supplies are available not only at the aforementioned venues, but also whereever USB phone-chargers are sold, since 5.0 V is what a USB phone-charger should deliver.

user10794: You must use a resistor. See The care and feeding of LEDs

How Do I fix it?

Use a current-limiting resistor.

30792: <p>I put a LED into 3.3V of the arduino and Ground, and it blew my LED violently, smoke was everyone, the whole half top of the led blew up across my room.</p>

<p>However, when i program the arduino with Pin13 HIGH per say, it will not blow up. Will be lit brightly. (Both using no resistors). However, if I plug mroe stuff in the board, for example, a lcd screen, rotary switches, and pushbuttons for my program, the LED dims to such a low brightness I cannot see.</p>

<p>Why is this? How Do I fix it?</p>

<p>Schematic:
<a href="https://i.stack.imgur.com/L48SJ.gif" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/L48SJ.gif" alt="enter image description here"></a></p>

<p>Note, that i am using a mega, and some of it is slightly changed, and LED is being powered from A0 (Or Pin 54 on Mega)</p>
 3917: <blockquote>
  <p>“I put a LED into 3.3V of the arduino and Ground, and it blew my LED violently ... the whole half top of the led blew up ...” – </p>
</blockquote>

<p>Current through the LED was so high that a tiny interconnect wire blew up.  In typical LEDs, an almost-invisible wire connects from the anode lead frame to the LED chip on the cathode lead frame (at left and right, respectively, on each of the three lead frames pictured below).  That wire acted like a fuse and blew up.  With such a fine wire, it doesn't take particularly much current to pop it. </p>

<p>The diagram below shows how current through an LED increases exponentially as voltage across it rises.  The diagram is from <a href="http://www.mikesflightdeck.com/led_dimmer/leds_and_dimming.html" rel="nofollow noreferrer">"mikesflightdeck.com LED dimmer" webpage</a>, a page which may be useful in helping you understand why LEDs need series resistors or some other form of current limiting, eg a constant-current circuit.</p>

<p><a href="https://i.stack.imgur.com/jC2rW.jpg" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/jC2rW.jpg" alt="LED voltage vs current graph"></a><a href="https://i.stack.imgur.com/6aaCG.jpg" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/6aaCG.jpg" alt="LED lead frame"></a></p>

<p>When an LED is powered by an Arduino port output, the port's internal resistance is enough to limit LED current to non-lethal (to the LED) values.  (However, the port itself may get burned out by delivering current beyond its 40 mA absolute max current rating.)</p>

<blockquote>
  <p>“However, if I plug more stuff in the board ... the LED dims to such a low brightness ...” – </p>
</blockquote>

<p>The stuff being plugged in apparently is drawing enough current to drop the system voltage.  This can happen if your Arduino is powered by a low-power source like a 9-volt transistor-radio battery, or a laptop USB port that can't deliver the 500 mA that a standard USB port is rated at.</p>

<p>If either of those causes is behind the problem, use an external power supply, plugged into the power jack or connected to Vin and Ground.  You can buy suitable “wall-warts” online, or at an electronics store, or quite cheaply at second-hand or thrift shops.</p>

<p>But if neither of those causes is the problem, you may have a clone of an Arduino using substandard parts, and unable to deliver reasonable current through its regulators.  In this case, find a well-regulated 5 V supply to connect between +5V and Ground or to the USB's power pins.  Such supplies are available not only at the aforementioned venues, but also whereever USB phone-chargers are sold, since 5.0 V is what a USB phone-charger should deliver.</p>
 10794: <p>You <em>must</em> use a resistor. See <a href="http://www.thebox.myzen.co.uk/Tutorial/LEDs.html" rel="nofollow noreferrer">The care and feeding of LEDs</a></p>

<blockquote>
  <p>How Do I fix it?</p>
</blockquote>

<p>Use a current-limiting resistor.</p>
