user7507: I am looking for software that has chess engine analysis but also allows me to take notes and save games. I have used Scid in the past for this and liked it, but I just want to see if there is something better out there.

user-1: I prefer list form, so allow a decent list that I came up with:

CBO or ChessBase
Fritz
Houdini
Komodo

are my top four picks. Although this really isn't an answer, it was too long for a comment so I posted it here.

user4418: The old Fritz 5.32 (last free version) does this. Of course it is not as powerful as the latest version (big understatement). It is available here http://freechess.50webs.com/fritz.html but note that it will need some work (described on the website) to get it to run on modern versions of Windows.
I alternate between Fritz 8, which is not quite as old as the free version and runs on modern operating systems, and Scid vs PC which is a much more modern fork of Scid and could also be worth trying especially if you are still stuck on original Scid.

user8309: Chessbase is top of the line, but there are a lot of alternatives: Hiarcs Chess Explorer, the Shredder GUIs, Aquarium, Chess Assistant and Chesspartner.
Arena is free, but has a few of the menu items in German, and is perhaps more for playing engines than analysis.  Other free ones are Chesspad, Kvetka, Penguin and Tarrasch.
SCID is pretty good for a free program, but the commercial ones have a lot of interesting features.

7507: <p>I am looking for software that has chess engine analysis but also allows me to take notes and save games. I have used Scid in the past for this and liked it, but I just want to see if there is something better out there.</p>
 -1: <p>I prefer list form, so allow a decent list that I came up with:</p>

<ul>
<li><p>CBO or ChessBase</p></li>
<li><p>Fritz</p></li>
<li><p>Houdini</p></li>
<li><p>Komodo</p></li>
</ul>

<p>are my top four picks. Although this really isn't an answer, it was too long for a comment so I posted it here.</p>
 4418: <p>The old Fritz 5.32 (last free version) does this. Of course it is not as powerful as the latest version (big understatement). It is available here <a href="http://freechess.50webs.com/fritz.html" rel="nofollow noreferrer">http://freechess.50webs.com/fritz.html</a> but note that it will need some work (described on the website) to get it to run on modern versions of Windows.</p>

<p>I alternate between Fritz 8, which is not quite as old as the free version and runs on modern operating systems, and <a href="http://scidvspc.sourceforge.net/" rel="nofollow noreferrer">Scid vs PC</a> which is a much more modern fork of Scid and could also be worth trying especially if you are still stuck on original Scid.</p>
 8309: <p>Chessbase is top of the line, but there are a lot of alternatives: Hiarcs Chess Explorer, the Shredder GUIs, Aquarium, Chess Assistant and Chesspartner.</p>

<p>Arena is free, but has a few of the menu items in German, and is perhaps more for playing engines than analysis.  Other free ones are Chesspad, Kvetka, Penguin and Tarrasch.</p>

<p>SCID is pretty good for a free program, but the commercial ones have a lot of interesting features.</p>
