text: user9373: I have a list of genes (about 2000) from lines of drosophila subobscura, in the following format:
  
  LOC117900589
  LOC11788959
  LOC11790331
  
  I'm trying to represent this set of genes in a useful way.
  So, I was recommended to represent the ontology function of these genes in a graphical way.
  I was recommended this tool:
  http://cbl-gorilla.cs.technion.ac.il/
  One inputs a list of genes and it outputs this kind of graph:
  
  The problem is that, this tool, GOrilla only accepts genes from drosophila melanogaster.
  I have to either:
  
  a) convert the genes id to a homologous gene in melanogaster
  b) find an alternative tool
  
  A solution to either a) or b) would be helpful. Or an alternative solution.
  For a) I tried:
  
  Ncbi's homologene: which doesn't seem to be working for a the genes ID I tried so far (I didn't try them all)
  Blasting the gene sequence on melanogaster's genome and looking through the list manually to find an homologous gene.
  
  So far these methods have been impractical for the number of genes I have.
  
  user15931: Have you tried DAVID for functional annotation (Gene Ontology and KEGG terms)?
  I usually use DAVID to extract GO and KEGG terms and plot the results using R.
  If you also want to plot a protein-protein interaction (PPI) network for your gene list you can use STRING database to extract interactions and network and use Cytoscape for visualizing this result.
  
original_text: 9373: <p>I have a list of genes (about 2000) from lines of <strong>drosophila subobscura</strong>, in the following format:</p>
  <ul>
  <li>LOC117900589</li>
  <li>LOC11788959</li>
  <li>LOC11790331</li>
  </ul>
  <p>I'm trying to represent this set of genes in a useful way.</p>
  <p>So, I was recommended to represent the ontology function of these genes in a graphical way.
  I was recommended this tool:
  <a href="http://cbl-gorilla.cs.technion.ac.il/" rel="nofollow noreferrer">http://cbl-gorilla.cs.technion.ac.il/</a></p>
  <p>One inputs a list of genes and it outputs this kind of graph:
  <a href="https://i.stack.imgur.com/cQZXm.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/cQZXm.png" alt="GOrilla example output" /></a></p>
  <p>The problem is that, this tool, GOrilla only accepts genes from <strong>drosophila melanogaster</strong>.</p>
  <p>I have to either:</p>
  <ul>
  <li><strong>a)</strong> convert the genes id to a homologous gene in <strong>melanogaster</strong></li>
  <li><strong>b)</strong> find an alternative tool</li>
  </ul>
  <p>A solution to either a) or b) would be helpful. Or an alternative solution.</p>
  <p>For a) I tried:</p>
  <ul>
  <li>Ncbi's <strong>homologene</strong>: which doesn't seem to be working for a the genes ID I tried so far (I didn't try them all)</li>
  <li>Blasting the gene sequence on melanogaster's genome and looking through the list manually to find an homologous gene.</li>
  </ul>
  <p>So far these methods have been impractical for the number of genes I have.</p>
   15931: <p>Have you tried <a href="https://david.ncifcrf.gov/summary.jsp" rel="nofollow noreferrer">DAVID</a> for functional annotation (Gene Ontology and KEGG terms)?</p>
  <p>I usually use DAVID to extract GO and KEGG terms and plot the results using R.</p>
  <p>If you also want to plot a protein-protein interaction (PPI) network for your gene list you can use STRING database to extract interactions and network and use Cytoscape for visualizing this result.</p>
  