text: user10557: I´m working with a dataset of 566 genomes to analyze a pangenome. So I was working with PANWEB to create this pan core genome curve, however, there is too much sequence to work with this webserver. Well, specifically I´m looking for this kind of plot:
  
  So, I just want to ask for some ideas of programs to do that with a big dataset and with a command line.
  Here is the reference: https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138
  
  user15583: The command create_pan_genome_plots from Roary can create a plot like this:
  
  
original_text: 10557: <p>I´m working with a dataset of 566 genomes to analyze a pangenome. So I was working with PANWEB to create this pan core genome curve, however, there is too much sequence to work with this webserver. Well, specifically I´m looking for this kind of plot:
  <a href="https://i.stack.imgur.com/N0idM.jpg" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/N0idM.jpg" alt="enter image description here" /></a></p>
  <p>So, I just want to ask for some ideas of programs to do that with a big dataset and with a command line.</p>
  <p>Here is the reference: <a href="https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138" rel="nofollow noreferrer">https://www.researchgate.net/figure/Pan-genome-and-core-genome-Graph-representing-the-pan-genome-blue-and-core-genome_fig1_317390138</a></p>
   15583: <p>The command <code>create_pan_genome_plots</code> from <a href="http://sanger-pathogens.github.io/Roary/" rel="nofollow noreferrer">Roary</a> can create a plot like this:
  <a href="https://i.stack.imgur.com/L3X7S.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/L3X7S.png" alt="enter image description here" /></a></p>
  