text: user16456: Background I have a data set of 4665 proteins from Phytophthora cactorum and want to analyze them in the String database as other database does not have Phytophthora cactorum for GO or KEGG analysis. The String database states I can upload a maximum of 2000 proteins at once.
  Thus I subset my data into 3 sets and upload. However, it gives/risks statistically biased analysis.
  Question Is there any possibility I can analyze all of my 4665 protein sequences at once?
  Looking forward for the help.
  Best regards,
  Bikal
  
  user298: I didn't even know STRING has the kind of analysis you are requesting, I don't see it on their webpage. In any case, the standard tool for GO or KEGG analyses, at least back when I was doing this sort of thing, is DAVID.
  I have confirmed that it does have Phytophthora cactorum so all you need to do is upload your file there and use their tools.
  
original_text: 16456: <p><strong>Background</strong> I have a data set of 4665 proteins from <em>Phytophthora cactorum</em> and want to analyze them in the <a href="https://string-db.org" rel="nofollow noreferrer">String database</a> as other database does not have <em>Phytophthora cactorum</em> for GO or KEGG analysis. The String database states I can upload a maximum of 2000 proteins at once.</p>
  <p>Thus I subset my data into 3 sets and upload. However, it gives/risks statistically biased analysis.</p>
  <p><strong>Question</strong> Is there any possibility I can analyze all of my 4665 protein sequences at once?</p>
  <p>Looking forward for the help.</p>
  <p>Best regards,</p>
  <p>Bikal</p>
   298: <p>I didn't even know STRING has the kind of analysis you are requesting, I don't see it on their webpage. In any case, the standard tool for GO or KEGG analyses, at least back when I was doing this sort of thing, is <a href="https://david.ncifcrf.gov/tools.jsp" rel="nofollow noreferrer">DAVID</a>.</p>
  <p>I have confirmed that it does have Phytophthora cactorum so all you need to do is upload your file there and use their tools.</p>
  