text: user14560: I have two genomes with high similarity. But I found out that one genome has a longer sequence of about 200 kbp. I try to align the sequence with Mauve. How can I extract this unique 200 kbp?
  
  user14560: I've found the answer.
  I've aligned these genomes (gbk files) with Mauve Contig Mover, and then I exported the Gap File into a csv file. Then I used python pandas to analyze the region that is unique to each strand from the csv file.
  
original_text: 14560: <p>I have two genomes with high similarity. But I found out that one genome has a longer sequence of about 200 kbp. I try to align the sequence with Mauve. How can I extract this unique 200 kbp?</p>
   14560: <p>I've found the answer.</p>
  <p>I've aligned these genomes (gbk files) with Mauve Contig Mover, and then I exported the Gap File into a csv file. Then I used python pandas to analyze the region that is unique to each strand from the csv file.</p>
  