text: user9387: I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (https://biocorecrg.github.io/master_of_pores/install.html). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
  nextflow: command not found. Any help would be most appreciated.
  curl https://get.nextflow.io | bash
  mv nextflow ~/master_of_pores/NanoPreProcess/bin
  nextflow run nanopreprocess.nf
  
  
  user9395: you should not move nextflow within ~/master_of_pores/NanoPreProcess/bin .
  Just add nextflow in your path.
  export PATH=$PATH:where_is_your_nf_executable
  
  Feel free to open an issue on github if you need more help.
  
original_text: 9387: <p>I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (<a href="https://biocorecrg.github.io/master_of_pores/install.html" rel="nofollow noreferrer">https://biocorecrg.github.io/master_of_pores/install.html</a>). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
  nextflow: command not found. Any help would be most appreciated.</p>
  <pre><code>curl https://get.nextflow.io | bash
  mv nextflow ~/master_of_pores/NanoPreProcess/bin
  nextflow run nanopreprocess.nf
  </code></pre>
   9395: <p>you should not move nextflow within <code>~/master_of_pores/NanoPreProcess/bin</code> .
  Just add nextflow in your path.</p>
  <pre><code>export PATH=$PATH:where_is_your_nf_executable
  </code></pre>
  <p>Feel free to open an issue on github if you need more help.</p>
  