text: user4595: I have average log fold change for a cluster of cells versus another cluster of cells by Seurat like below 
           avg_logFC
  TAGLN   -2.507833541
  TXNRD1  1.093672244
  MYL9    -1.579165463
  ACTB    -1.482386539
  ACTA2   -2.379757433
  SQSTM1  1.227562767
  ACTG2   -2.144757086
  
  I have also mean log2 ratio of a set of proteins in treatment versus control like below (I converted protein IDs to gene symbol)
  mean log2ratio  Gene Symbol
  -0.3    CYFIP1
  0.4     GNPTG
  -0.3    WWC2
  -0.5    TRPV4
  -0.4    CHRM2
  0.3     MFSD11
  -0.3    ANXA11
  0.3     CENPE
  -0.4    RPL22L1
  0.3     SAMD1
  
  How I can normalize these two data or make them compatible for plotting a heatmap, pathway analysis, etc?
  
  user77: There's no need to normalize them, you're not comparing them. Just use them as they are.
  
original_text: 4595: <p>I have average log fold change for a cluster of cells versus another cluster of cells by Seurat like below </p>
  
  <pre><code>         avg_logFC
  TAGLN   -2.507833541
  TXNRD1  1.093672244
  MYL9    -1.579165463
  ACTB    -1.482386539
  ACTA2   -2.379757433
  SQSTM1  1.227562767
  ACTG2   -2.144757086
  </code></pre>
  
  <p>I have also mean log2 ratio of a set of proteins in treatment versus control like below (I converted protein IDs to gene symbol)</p>
  
  <pre><code>mean log2ratio  Gene Symbol
  -0.3    CYFIP1
  0.4     GNPTG
  -0.3    WWC2
  -0.5    TRPV4
  -0.4    CHRM2
  0.3     MFSD11
  -0.3    ANXA11
  0.3     CENPE
  -0.4    RPL22L1
  0.3     SAMD1
  </code></pre>
  
  <p>How I can normalize these two data or make them compatible for plotting a heatmap, pathway analysis, etc?</p>
   77: <p>There's no need to normalize them, you're not comparing them. Just use them as they are.</p>
  