text: user15536: Where can I find databases for breast cancer mutations (SNPs & indels) phenotype, with chromosome, position, ref, alt, gene, clinical significance.
  So far, I have only found the Clinvar database.
  I need to extract data for breast cancer, in order to train a machine learning model that will be able to predict the pathogenicity of variants (benign, pathogenic etc).
  So I did the extraction of data from clinvar vcf file (chromosome, ref, alt, clinical significance), but the clinvar data for breast cancer is very small.
  
  user15519: Do you mean this (a product of the BRCA Challenge project):
  
  https://brcaexchange.org/
  
  
  
original_text: 15536: <p>Where can I find databases for breast cancer mutations (SNPs &amp; indels) phenotype, with chromosome, position, ref, alt, gene, clinical significance.</p>
  <p>So far, I have only found the Clinvar database.</p>
  <p>I need to extract data for breast cancer, in order to train a machine learning model that will be able to predict the pathogenicity of variants (benign, pathogenic etc).</p>
  <p>So I did the extraction of data from clinvar vcf file (chromosome, ref, alt, clinical significance), but the clinvar data for breast cancer is very small.</p>
   15519: <p>Do you mean this (a product of the BRCA Challenge project):</p>
  <blockquote>
  <p><a href="https://brcaexchange.org/" rel="nofollow noreferrer">https://brcaexchange.org/</a></p>
  </blockquote>
  <p><a href="https://i.stack.imgur.com/S08iv.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/S08iv.png" alt="enter image description here" /></a></p>
  