text: user3851: I install hdf5r following https://github.com/hhoeflin/hdf5r， it shows two methods:
  
  When I use the second method to install from github,it showed many errors：
  
  
  The downloaded source packages are in
  ‘C:\Users\dell\AppData\Local\Temp\RtmpI7TP9f\downloaded_packages’
  √ checking for file 'C:\Users\dell\AppData\Local\Temp\RtmpI7TP9f\remotes8c87faaf3d\hhoeflin-hdf5r-cc278c1/DESCRIPTION'
  
  * preparing 'hdf5r': (4.9s)
    √  checking DESCRIPTION meta-information ...
  * cleaning src
  * checking for LF line-endings in source and make files and shell scripts (676ms)
  * checking for empty or unneeded directories (1.5s)
  * building 'hdf5r_1.0.1.tar.gz'
    Warning: file 'hdf5r/cleanup' did not have execute permissions: corrected
    Warning: file 'hdf5r/configure' did not have execute permissions: corrected
  
  * installing _source_ package 'hdf5r' ...
    checking hdf5 headers and libraries
    Environment variable LIB_HDF5 is not set. Attempting to download HDF5 files from repository.
    试开URL’https://github.com/mannau/h5-libwin/archive/master.zip'
    Content type 'application/zip' length unknown
    ** libs
    错误: (由警告转换成)this package has a non-empty 'configure.win' file,
    so building only the main architecture
  * removing 'D:/soft ware/R-3.5.2/library/hdf5r'
    In R CMD INSTALL
    Error in i.p(...) :
    (converted from warning) installation of package ‘C:/Users/dell/AppData/Local/Temp/RtmpI7TP9f/file8c863b6795/hdf5r_1.0.1.tar.gz’ had non-zero exit status
    In addition: Warning messages:
    1: In untar2(tarfile, files, list, exdir) :
    skipping pax global extended headers
    2: In untar2(tarfile, files, list, exdir) :
    skipping pax global extended headers
  
  But when I use the first command:install.packages("hdf5r"), it worked:
    
  Can anyone help me? I search many times, but I could't find the answer.
  
  user4001: Try running this:
  source("https://bioconductor.org/biocLite.R")
  biocLite("hdf5r")
  
  Just a different method of installing packages besides github. It is more centred around bioinformatics packages as well so it is pretty useful.
  
original_text: 3851: <p>I install hdf5r following <a href="https://github.com/hhoeflin/hdf5r%EF%BC%8Cit" rel="nofollow noreferrer">https://github.com/hhoeflin/hdf5r</a>， it shows two methods:
  <img src="https://user-images.githubusercontent.com/30619010/52907396-e8e2ad00-329b-11e9-998b-96431b055ba0.png" alt="image">
  When I use the second method to install from github,it showed many errors：
  <img src="https://user-images.githubusercontent.com/30619010/52907457-e0d73d00-329c-11e9-9921-14408bd51967.png" alt="image">
  <img src="https://user-images.githubusercontent.com/30619010/52907426-5989c980-329c-11e9-95a6-e122f7196071.png" alt="image"></p>
  
  <pre><code>The downloaded source packages are in
  ‘C:\Users\dell\AppData\Local\Temp\RtmpI7TP9f\downloaded_packages’
  √ checking for file 'C:\Users\dell\AppData\Local\Temp\RtmpI7TP9f\remotes8c87faaf3d\hhoeflin-hdf5r-cc278c1/DESCRIPTION'
  
  * preparing 'hdf5r': (4.9s)
    √  checking DESCRIPTION meta-information ...
  * cleaning src
  * checking for LF line-endings in source and make files and shell scripts (676ms)
  * checking for empty or unneeded directories (1.5s)
  * building 'hdf5r_1.0.1.tar.gz'
    Warning: file 'hdf5r/cleanup' did not have execute permissions: corrected
    Warning: file 'hdf5r/configure' did not have execute permissions: corrected
  
  * installing _source_ package 'hdf5r' ...
    checking hdf5 headers and libraries
    Environment variable LIB_HDF5 is not set. Attempting to download HDF5 files from repository.
    试开URL’https://github.com/mannau/h5-libwin/archive/master.zip'
    Content type 'application/zip' length unknown
    ** libs
    错误: (由警告转换成)this package has a non-empty 'configure.win' file,
    so building only the main architecture
  * removing 'D:/soft ware/R-3.5.2/library/hdf5r'
    In R CMD INSTALL
    Error in i.p(...) :
    (converted from warning) installation of package ‘C:/Users/dell/AppData/Local/Temp/RtmpI7TP9f/file8c863b6795/hdf5r_1.0.1.tar.gz’ had non-zero exit status
    In addition: Warning messages:
    1: In untar2(tarfile, files, list, exdir) :
    skipping pax global extended headers
    2: In untar2(tarfile, files, list, exdir) :
    skipping pax global extended headers
  </code></pre>
  
  <p>But when I use the first command:install.packages("hdf5r"), it worked:
    <img src="https://user-images.githubusercontent.com/30619010/52907413-23e4e080-329c-11e9-9e32-916eccdb0b2d.png" alt="image"></p>
  
  <p>Can anyone help me? I search many times, but I could't find the answer.</p>
   4001: <p>Try running this:</p>
  
  <pre><code>source("https://bioconductor.org/biocLite.R")
  biocLite("hdf5r")
  </code></pre>
  
  <p>Just a different method of installing packages besides github. It is more centred around bioinformatics packages as well so it is pretty useful.</p>
  