text: user1843: I'm using DRIMSeq to do some analysis but I'd like to make my own figures from the results ideally using what they've done as a base.
  I'm trying to find how they make their ggplot objects in the function plotProportoins but when I use findMethods('plotProportoins') it ends up with a method dmPlotProportoins.
  It says in the manual that it's a ggplot object but I can't seem to find how they make it. Any ideas?
  
  user57: I was curious how they have done it as well, so here expanded @Liopis comment :
  wget http://bioconductor.org/packages/release/bioc/src/contrib/DRIMSeq_1.6.0.tar.gz
  tar -zxf DRIMSeq_1.6.0.tar.gz 
  # if you need to find it, or use grep
  # find DRIMSeq -name "dm_plotProportions.R"
  less DRIMSeq/R/dm_plotProportions.R
  
  
original_text: 1843: <p>I'm using DRIMSeq to do some analysis but I'd like to make my own figures from the results ideally using what they've done as a base.</p>
  
  <p>I'm trying to find how they make their ggplot objects in the function <code>plotProportoins</code> but when I use <code>findMethods('plotProportoins')</code> it ends up with a method <code>dmPlotProportoins</code>.</p>
  
  <p>It says in the manual that it's a <em>ggplot</em> object but I can't seem to find how they make it. Any ideas?</p>
   57: <p>I was curious how they have done it as well, so here expanded @Liopis comment :</p>
  
  <pre><code>wget http://bioconductor.org/packages/release/bioc/src/contrib/DRIMSeq_1.6.0.tar.gz
  tar -zxf DRIMSeq_1.6.0.tar.gz 
  # if you need to find it, or use grep
  # find DRIMSeq -name "dm_plotProportions.R"
  less DRIMSeq/R/dm_plotProportions.R
  </code></pre>
  