text: user4915: "CIRIquant" is a Python package for detecting Circular RNA. I installed "CIRIquant" through the below command in terminal:
  
  pip install CIRIquant
  
  My Linux distribution is Ubuntu 16.04 and my python version is Python 2.7.12. After installing, I got the below message:
  “Installing collected packages: numpy, scipy, scikit-learn, pysam, PyYAML, argparse, numexpr, CIRIquant
  Successfully installed CIRIquant-1.1.2 PyYAML-5.1.1 argparse-1.2.1 numexpr-2.6.9 numpy-1.16.4 pysam-0.15.2 scikit-learn-0.20.3 scipy-1.2.2”
  So, When I call CIRIquant for running its function in Terminal, I got the below message in Terminal:
  CIRIquant: command not found
  
  Now, I don't know what is my problem?
  I appreciate it if anybody shares his/her comment with me.
  Best,
  
  user4980: When I try this as a regular user on our Ubuntu 16 LTS system, I end up with ~/.local/bin/CIRIquant from the pip install, so maybe just add that directory to your path:
  $ export PATH="$HOME/.local/bin:$PATH"
  $ CIRIquant -h
  usage: CIRIquant [-h] [--config FILE] [-1 MATE1] [-2 MATE2] [-o DIR]
                   [-p PREFIX] [-t INT] [-a INT] [-l INT] [-v] [--version]
                   [-e LOG] [--bed FILE] [--circ FILE] [--tool TOOL]
                   [--RNaseR FILE] [--bam BAM] [--no-gene]
  
  
original_text: 4915: <p>&quot;<a href="https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_1_installation.html" rel="nofollow noreferrer">CIRIquant</a>&quot; is a Python package for detecting Circular RNA. I installed &quot;CIRIquant&quot; through the below command in terminal:</p>
  <blockquote>
  <p>pip install CIRIquant</p>
  </blockquote>
  <p>My Linux distribution is Ubuntu 16.04 and my python version is Python 2.7.12. After installing, I got the below message:
  “Installing collected packages: numpy, scipy, scikit-learn, pysam, PyYAML, argparse, numexpr, CIRIquant
  Successfully installed CIRIquant-1.1.2 PyYAML-5.1.1 argparse-1.2.1 numexpr-2.6.9 numpy-1.16.4 pysam-0.15.2 scikit-learn-0.20.3 scipy-1.2.2”</p>
  <p>So, When I call CIRIquant for running its function in Terminal, I got the below message in Terminal:</p>
  <pre><code>CIRIquant: command not found
  </code></pre>
  <p>Now, I don't know what is my problem?
  I appreciate it if anybody shares his/her comment with me.
  Best,</p>
   4980: <p>When I try this as a regular user on our Ubuntu 16 LTS system, I end up with <code>~/.local/bin/CIRIquant</code> from the pip install, so maybe just add that directory to your path:</p>
  <pre><code>$ export PATH=&quot;$HOME/.local/bin:$PATH&quot;
  $ CIRIquant -h
  usage: CIRIquant [-h] [--config FILE] [-1 MATE1] [-2 MATE2] [-o DIR]
                   [-p PREFIX] [-t INT] [-a INT] [-l INT] [-v] [--version]
                   [-e LOG] [--bed FILE] [--circ FILE] [--tool TOOL]
                   [--RNaseR FILE] [--bam BAM] [--no-gene]
  </code></pre>
  