text: user1196: I would like to convert BAM and VCF files to ADAM format.
  How do I do that?
  
  user1196: These transformations are quite simple with the adam-submit script packaged with ADAM.
  Transformation of BAM files 
  adam-submit -- transformAlignments sample.bam sample.alignments.adam
  
  Transformation of VCF files
  adam-submit -- transformVariants sample.vcf.gz sample.variants.adam
  
  
original_text: 1196: <p>I would like to convert BAM and VCF files to <a href="https://github.com/bigdatagenomics/adam" rel="nofollow noreferrer">ADAM</a> format.</p>
  
  <p>How do I do that?</p>
   1196: <p>These transformations are quite simple with the <code>adam-submit</code> script packaged with ADAM.</p>
  
  <p><strong>Transformation of BAM files</strong> </p>
  
  <pre><code>adam-submit -- transformAlignments sample.bam sample.alignments.adam
  </code></pre>
  
  <p><strong>Transformation of VCF files</strong></p>
  
  <pre><code>adam-submit -- transformVariants sample.vcf.gz sample.variants.adam
  </code></pre>
  