text: user3501: I am currently working on multiple datasets where each is managed by a separate Seurat object. For each I'd like to also compute the marker genes using the FindAllMarkers function. Where would it be a good practice to save the markers returned from the FindAllMarkers function? I tried adding an extra slot to the Seurat object with no success.
  I saw the calc.params slot and though I could add an item to that list. However, it doesn't seem like the right place as that slot is a list of the parameters used for the different functions executed on the data.
  Currently I have some wrapping object that has a slot for the Seurat object and a slot for the results from the FindAllMarkers. Is there any better place to put it? Somewhere within the Seurat object?
  
  user3415: You can stash anything you like in the misc slot (present in both v2 and v3 Seurat objects). I often use it for storing marker information to help with organization. 
  
original_text: 3501: <p>I am currently working on multiple datasets where each is managed by a separate <code>Seurat</code> object. For each I'd like to also compute the marker genes using the <code>FindAllMarkers</code> function. Where would it be a good practice to save the markers returned from the <code>FindAllMarkers</code> function? I tried adding an extra slot to the <code>Seurat</code> object with no success.</p>
  
  <p>I saw the <code>calc.params</code> slot and though I could add an item to that list. However, it doesn't seem like the right place as that slot is a list of the parameters used for the different functions executed on the data.</p>
  
  <p>Currently I have some wrapping object that has a slot for the <code>Seurat</code> object and a slot for the results from the <code>FindAllMarkers</code>. Is there any better place to put it? Somewhere within the <code>Seurat</code> object?</p>
   3415: <p>You can stash anything you like in the <code>misc</code> slot (present in both v2 and v3 Seurat objects). I often use it for storing marker information to help with organization. </p>
  