text: user6470: I am trying to map a RNA-seq dataset using ensembl genome for medaka fish. 
  From here http://uswest.ensembl.org/Oryzias_latipes/Info/Index
  when I click on a Download DNA sequence (FASTA) I am forwarded here ftp://ftp.ensembl.org/pub/release-98/fasta/oryzias_latipes/dna/
  where I have a huge number of .fa.gz files and I am just looking for a single file, that I can use. 
  While when I am downloading medaka genome from NCBI (and using this technique) http://www.metagenomics.wiki/tools/fastq/ncbi-ftp-genome-download I have my ncbi genome in one file.
  How can I get an ensembl genome in one file? 
  
  user1332: Download the ones without a chromosome number in the filename. Those files are the whole genome.
  
original_text: 6470: <p>I am trying to map a RNA-seq dataset using ensembl genome for medaka fish. </p>
  
  <p>From here <a href="http://uswest.ensembl.org/Oryzias_latipes/Info/Index" rel="nofollow noreferrer">http://uswest.ensembl.org/Oryzias_latipes/Info/Index</a></p>
  
  <p>when I click on a <code>Download DNA sequence (FASTA)</code> I am forwarded here <a href="ftp://ftp.ensembl.org/pub/release-98/fasta/oryzias_latipes/dna/" rel="nofollow noreferrer">ftp://ftp.ensembl.org/pub/release-98/fasta/oryzias_latipes/dna/</a></p>
  
  <p>where I have a huge number of <code>.fa.gz</code> files and I am just looking for a single file, that I can use. </p>
  
  <p>While when I am downloading medaka genome from NCBI (and using this technique) <a href="http://www.metagenomics.wiki/tools/fastq/ncbi-ftp-genome-download" rel="nofollow noreferrer">http://www.metagenomics.wiki/tools/fastq/ncbi-ftp-genome-download</a> I have my ncbi genome in one file.</p>
  
  <p>How can I get an ensembl genome in one file? </p>
   1332: <p>Download the ones without a chromosome number in the filename. Those files are the whole genome.</p>
  