text: user3649: I didn't find way that convert protein sequences in  FASTA to PSSM by python,
  and how to write program in python to find PSSM for our data set ?
  Maybe better to question how to find PSSM from NCBI alignments ?
  Thank you  
  
  user3649: We solve our problem and create gitHub repository (bio-protein).
  
original_text: 3649: <p>I didn't find way that convert protein sequences in  FASTA to PSSM by python,
  and how to write program in python to find PSSM for our data set ?
  Maybe better to question how to find PSSM from NCBI alignments ?</p>
  
  <p>Thank you  </p>
   3649: <p>We solve our problem and create gitHub repository (<a href="https://github.com/MsAlEhR/bio-protein-recog" rel="nofollow noreferrer">bio-protein</a>).</p>
  