text: user6471: I am trying to find the subcellular localization of my 10,000 proteins using UniProt.ws package for R. However, I am unable to find all the columns available for query.
  I used another package named Bioconductor which had easy way to lookup all the columns available using COLUMNS(org.Hs.eg.db)
  I tried reading the documentation and couldn't find anything which can output subcellular localization. I am new to this field, any help is appreciated.
  
  user6437: Do you have a small sample of the proteins you are looking for and what you have tried so far in R using Uniprot.ws ? (including output of it), it could be helpful to identify your problem and how to solve it.
  Personally, I would rather consider Bioconductor as a platform for providing R packages dedicated to bioinformatics than a package to analyze data (but it's my opinion, maybe I'm wrong).
  
  user3541: From the UniProt.ws manual:
  
  columns shows which kinds of data can be returned for the
    UniProt.ws object.
  
  So, you will need to go over the output of columns(your_uniprotws_object) if it includes the data type you are looking for.
  And here is a related question.
  
original_text: 6471: <p>I am trying to find the subcellular localization of my 10,000 proteins using UniProt.ws package for R. However, I am unable to find all the columns available for query.</p>
  
  <p>I used another package named Bioconductor which had easy way to lookup all the columns available using COLUMNS(org.Hs.eg.db)</p>
  
  <p>I tried reading the documentation and couldn't find anything which can output subcellular localization. I am new to this field, any help is appreciated.</p>
   6437: <p>Do you have a small sample of the proteins you are looking for and what you have tried so far in R using Uniprot.ws ? (including output of it), it could be helpful to identify your problem and how to solve it.</p>
  
  <p>Personally, I would rather consider Bioconductor as a platform for providing R packages dedicated to bioinformatics than a package to analyze data (but it's my opinion, maybe I'm wrong).</p>
   3541: <p>From the <code>UniProt.ws</code> <a href="https://bioconductor.org/packages/release/bioc/manuals/UniProt.ws/man/UniProt.ws.pdf" rel="nofollow noreferrer">manual</a>:</p>
  
  <blockquote>
    <p><code>columns</code> shows which kinds of data can be returned for the
    <code>UniProt.ws</code> object.</p>
  </blockquote>
  
  <p>So, you will need to go over the output of <code>columns(your_uniprotws_object)</code> if it includes the data type you are looking for.</p>
  
  <p>And <a href="https://bioinformatics.stackexchange.com/questions/9093/how-to-retrieve-the-subcellular-location-info-from-uniprot">here</a> is a related question.</p>
  