text: user988: I have a protein of interest and I would like to now how it interacts with RNA. I have structures of both molecules.
  What tool can I use?
  
  user640: I'm not sure what you meant but you can take a look at NPDock (disclaimer we wrote that tool). If you have a structure of your protein of interest, you can dock it to the structure of your DNA/RNA of interest. Mind that this is a rigid body docking which means that the structure will not change upon binding. 
  
original_text: 988: <p>I have a protein of interest and I would like to now how it interacts with RNA. I have structures of both molecules.</p>
  
  <p>What tool can I use?</p>
   640: <p>I'm not sure what you meant but you can take a look at <a href="http://genesilico.pl/NPDock" rel="nofollow noreferrer">NPDock</a> (disclaimer we wrote that tool). If you have a structure of your protein of interest, you can dock it to the structure of your DNA/RNA of interest. Mind that this is a rigid body docking which means that the structure will not change upon binding. </p>
  