text: user8646: The data is present in the PLINK format .bed (individual genotypes), .bim (genetic markers) and .fam (sample IDs and disease phenotype file). I have also separate text files containing information on subjects related to two populations. (i.e. European and Hispanic)
  
  
  user8660: 
  You need to report allele frequencies using plink for some European samples
  Do the same for Hispanic samples
  Use a software to subtract the two allele frequencies obtained above and obtain the result.
  
  
original_text: 8646: <p>The data is present in the PLINK format .bed (individual genotypes), .bim (genetic markers) and .fam (sample IDs and disease phenotype file). I have also separate text files containing information on subjects related to two populations. (i.e. European and Hispanic)</p>
  
  <p><a href="https://i.stack.imgur.com/NDGdV.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/NDGdV.png" alt="Question related PLINK data"></a></p>
   8660: <ol>
  <li>You need to report allele frequencies using <code>plink</code> for some European samples</li>
  <li>Do the same for Hispanic samples</li>
  <li>Use a software to subtract the two allele frequencies obtained above and obtain the result.</li>
  </ol>
  