text: user1082: My goal is to work on GWAS method development as a research project. However, human genome data are usually confidential because of the identification problem, so it's very hard to get them. (application takes a long time and I may not get it at the end.)
  Therefore, maybe I can try to play with the data of other species first. So I wonder where I can find some GWAS data for Zebrafish and rice. (The reason I am asking for these two is that I find researchers tend to perform genome analysis to mice, Arabidopsis Thaliana, zebrafish, and rice, and I already found where to download the GWAS data for the first two.)
  I can find several data sets (like ZFIN) that have the annotated genome information, but that's only one genome. Where can I download the raw data (like genotypes of 500 zebrafishes and corresponding phenotypes) to start my own analysis? 
  
  user73: I think it will be more productive for you if you choose one of the public human datasets and practise your GWAS methods on that. A couple of examples examples:
  
  1000 genomes -- use "population" as your trait of association. You'll find that you get association across the whole genome, so the analysis method would change from "what bits are associated" to "what are the bits that are most consistently associated"
  NCI Genomic Data Commons -- open access (and controlled access) data associated with cancer
  
  
original_text: 1082: <p>My goal is to work on GWAS method development as a research project. However, human genome data are usually confidential because of the identification problem, so it's very hard to get them. (application takes a long time and I may not get it at the end.)</p>
  
  <p>Therefore, maybe I can try to play with the data of other species first. So I wonder where I can find some GWAS data for Zebrafish and rice. (The reason I am asking for these two is that I find researchers tend to perform genome analysis to mice, Arabidopsis Thaliana, zebrafish, and rice, and I already found where to download the GWAS data for the first two.)</p>
  
  <p>I can find several data sets (like <a href="https://zfin.org/downloads" rel="nofollow noreferrer">ZFIN</a>) that have the annotated genome information, but that's only one genome. Where can I download the raw data (like genotypes of 500 zebrafishes and corresponding phenotypes) to start my own analysis? </p>
   73: <p>I think it will be more productive for you if you choose one of the public human datasets and practise your GWAS methods on that. A couple of examples examples:</p>
  
  <ul>
  <li><p><a href="http://www.internationalgenome.org/data" rel="nofollow noreferrer">1000 genomes</a> -- use "population" as your trait of association. You'll find that you get association across the whole genome, so the analysis method would change from "what bits are associated" to "what are the bits that are most consistently associated"</p></li>
  <li><p>NCI <a href="https://portal.gdc.cancer.gov/repository" rel="nofollow noreferrer">Genomic Data Commons</a> -- open access (and controlled access) data associated with cancer</p></li>
  </ul>
  