text: user15609: I have a fasta file containing reads generated by PacBio HiFi whole genome sequencing of a feces sample from mouse.
  I would like to use this dataset to generate an assembled circularized genome for an Anaeroplasma organism known to be in this sample.
  I am familiar with Linux and R. I would very much appreciate your advice on the needed steps and the required tools or R packages.
  
  user37: Try hifiasm-meta (paper here). Whether it works depends on the abundance and the complexity. You may also try HiCanu.
  
original_text: 15609: <p>I have a fasta file containing reads generated by PacBio HiFi whole genome sequencing of a feces sample from mouse.</p>
  <p>I would like to use this dataset to generate an assembled circularized genome for an Anaeroplasma organism known to be in this sample.</p>
  <p>I am familiar with Linux and R. I would very much appreciate your advice on the needed steps and the required tools or R packages.</p>
   37: <p>Try <a href="https://github.com/xfengnefx/hifiasm-meta" rel="nofollow noreferrer">hifiasm-meta</a> (<a href="https://www.nature.com/articles/s41592-022-01478-3" rel="nofollow noreferrer">paper here</a>). Whether it works depends on the abundance and the complexity. You may also try HiCanu.</p>
  