text: user993: Does any one have a condensed NCBI reference seq database with all the gbff files, which covers mostly all the bacteria and archaea. The current NCBI ReqSeq contains more than 30,000 gbff files. I am looking for a much more curated refseq with less than 30K files in it.
  
  user993: proGenomes includes a collection of genomes that are representative of different types - https://progenomes.embl.de/download.cgi
  Or Genome Updater could be used to filter on unique taxonomy IDs and genome completeness etc.
  https://github.com/pirovc/genome_updater
  
original_text: 993: <p>Does any one have a condensed NCBI reference seq database with all the gbff files, which covers mostly all the bacteria and archaea. The current NCBI ReqSeq contains more than 30,000 gbff files. I am looking for a much more curated refseq with less than 30K files in it.</p>
   993: <p>proGenomes includes a collection of genomes that are representative of different types - <a href="https://progenomes.embl.de/download.cgi" rel="nofollow noreferrer">https://progenomes.embl.de/download.cgi</a></p>
  <p>Or Genome Updater could be used to filter on unique taxonomy IDs and genome completeness etc.</p>
  <p><a href="https://github.com/pirovc/genome_updater" rel="nofollow noreferrer">https://github.com/pirovc/genome_updater</a></p>
  