text: user10722: I'm working with phage peptides libraries. Currently I'm analysing a massive data set from phage selection, NGS readout, preprocessed already (fasta file). I want to analyse the sequences to cluster peptides according to their consensus motifs. I found that Hammock may be helpful to do this.
  Here is the GitHub repo for Hammock: https://github.com/krejciadam/hammock. I downloaded the master, unpacked it, but I don't know how to use it.
  I guess I need to compile, but I have no idea what files need to be compiled, how to do it, what software I need use to compile etc.
  I work with Mac/terminal.
  
  user10591: 
  Download a release (Hammock_v_1.2.0.7z) from https://github.com/krejciadam/hammock/releases
  Unzip
  To run the first example:
  
  cd /your_path/Hammock_v_1.2.0/examples/MUSI/
  java -jar ../../dist/Hammock.jar full -i musi.fa
  
  As mentioned in the comments, it's in the manual and any further issues need more information (errors etc).
  
original_text: 10722: <p>I'm working with phage peptides libraries. Currently I'm analysing a massive data set from phage selection, NGS readout, preprocessed already (fasta file). I want to analyse the sequences to cluster peptides according to their consensus motifs. I found that Hammock may be helpful to do this.</p>
  <p>Here is the GitHub repo for Hammock: <a href="https://github.com/krejciadam/hammock" rel="nofollow noreferrer">https://github.com/krejciadam/hammock</a>. I downloaded the master, unpacked it, but I don't know how to use it.</p>
  <p>I guess I need to compile, but I have no idea what files need to be compiled, how to do it, what software I need use to compile etc.</p>
  <p>I work with Mac/terminal.</p>
   10591: <ol>
  <li>Download a release (Hammock_v_1.2.0.7z) from <a href="https://github.com/krejciadam/hammock/releases" rel="nofollow noreferrer">https://github.com/krejciadam/hammock/releases</a></li>
  <li>Unzip</li>
  <li>To run the first example:</li>
  </ol>
  <pre><code>cd /your_path/Hammock_v_1.2.0/examples/MUSI/
  java -jar ../../dist/Hammock.jar full -i musi.fa
  </code></pre>
  <p>As mentioned in the comments, it's in the manual and any further issues need more information (errors etc).</p>
  