text: user1633: I'm trying to retrieve the most expressed genes from a cell line from the NCI-60, lets say cell line NCI-H23, but I'm not sure where to find the gene expression data. My main goal is to create a network using that data and iRefIndex to be loaded into Cytoscape. Does anyone know where I can find the correct data or guide me in the right direction?
  
  user193: CellMiner portal has plenty of data about NCI-60 cell lines, inclusive microarray gene-expression.
  Also, NCI-60 is a subset of the ~1000 cell lines covered by the GDSC project for which you have multiple types of measurements (e.g. copy-number, mutation, gene-expression).
  
  user2346: Cosmic Cell Lines Project provides gene expression data for 1000+ cell lines (including NCI-60 panel together with NCI-H23 cell line). For each gene in a cell line, you can get Z-score and over/under-expression status calculated across all tumor samples diploid for that gene. 
  
original_text: 1633: <p>I'm trying to retrieve the most expressed genes from a cell line from the NCI-60, lets say cell line NCI-H23, but I'm not sure where to find the gene expression data. My main goal is to create a network using that data and iRefIndex to be loaded into Cytoscape. Does anyone know where I can find the correct data or guide me in the right direction?</p>
   193: <p><a href="https://discover.nci.nih.gov/cellminer/" rel="nofollow noreferrer">CellMiner</a> portal has plenty of data about NCI-60 cell lines, inclusive microarray gene-expression.</p>
  
  <p>Also, NCI-60 is a subset of the ~1000 cell lines covered by the <a href="http://www.cancerrxgene.org/downloads" rel="nofollow noreferrer">GDSC project</a> for which you have multiple types of measurements (e.g. copy-number, mutation, gene-expression).</p>
   2346: <p><a href="http://cancer.sanger.ac.uk/cell_lines/download" rel="nofollow noreferrer">Cosmic Cell Lines Project</a> provides gene expression data for 1000+ cell lines (including NCI-60 panel together with NCI-H23 cell line). For each gene in a cell line, you can get Z-score and over/under-expression status calculated across all tumor samples diploid for that gene. </p>
  