text: user8875: I can't seem to find HGDP data in VCF format.
  Does anyone know where I can download it from?
  Perhaps there a Snakemake pipeline for calling VCFs from this data?
  
  user3694: I presume you are looking for the recently sequenced WGS data rather than the genotype data? If so, the different files can be found here: ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/
  Each chromsome has a seperate vcf file with a corresponding .tbi index file.
  The gvcfs can be found here: ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/
  These files are more compressed and smaller in size than the regular vcfs.
  
original_text: 8875: <p>I can't seem to find HGDP data in VCF format.</p>
  <p>Does anyone know where I can download it from?</p>
  <p>Perhaps there a Snakemake pipeline for calling VCFs from this data?</p>
   3694: <p>I presume you are looking for the recently sequenced WGS data rather than the genotype data? If so, the different files can be found here: <a href="ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/" rel="nofollow noreferrer">ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/</a></p>
  <p>Each chromsome has a seperate vcf file with a corresponding .tbi index file.</p>
  <p>The gvcfs can be found here: <a href="ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/" rel="nofollow noreferrer">ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/</a></p>
  <p>These files are more compressed and smaller in size than the regular vcfs.</p>
  