text: user16328: I'm trying to build a Dockerfile. It has a tool called Atria that utilizes Julia. Since Ubuntu 22.04 does not have Julia package, I had to resort to installing it. The following is the Dockerfile:
  FROM ubuntu:22.04
  
  # Install tzdata
  RUN apt-get update &&\
      DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata
  
  # Install Python, Bowtie2 and Java
  RUN apt-get install -y python3.10 python3-pip \ 
      openjdk-8-jdk  \ 
      bowtie2 \ 
      wget
  
  RUN  apt-get install --yes --no-install-recommends \
       zlib1g-dev \
       libbz2-dev \
       liblzma-dev  
  
  # Install RSeQC
  RUN pip3 install RSeQC
  
  # Install biopython=1.80
  RUN pip3 install biopython
  
  #Install Julia
  RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.8/julia-1.8.1-linux-x86_64.tar.gz && \
      tar zxvf julia-1.8.1-linux-x86_64.tar.gz && \
      mv julia-1.8.1/bin/julia /usr/local/bin/julia && \
      chmod +x /usr/local/bin/julia
  
  RUN /sbin/ldconfig -v
  
  # Install Atria
  RUN wget https://github.com/cihga39871/Atria/releases/download/v3.1.2/atria-3.1.2-linux.tar.gz && \
      tar -zxf atria-3.1.2-linux.tar.gz && \
      mv atria-3.1.2/bin/atria /usr/local/bin/atria && \
      chmod +x /usr/local/bin/atria
  
  #Atria dependencies
  RUN  apt-get install pigz pbzip2
  
  # Install findtail
   RUN wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/findtail/findtail_v1.01 && \
       mv findtail_v1.01 /usr/local/bin/findtail_v1.01 && \
       chmod +x /usr/local/bin/findtail_v1.01 
  # Cleanup 
  RUN apt clean
  
  What I have tried so far is :
  
  Julia v1.6.7 and v1.8.4
  
  RUN /sbin/ldconfig -v as suggested here
  
  
  How to fix it? Should I try to install Julia using PPA?
  edit- The error:
  root@b0f4b17a7c18:/# atria
  /usr/local/bin/julia: error while loading shared libraries: libjulia.so.1: cannot open shared object file: No such file or directory
  
  It is recognizing the atria command tho.
  
  user3848: Just to note RUN apt clean  ... is much better performed using && apt clean, like in @Steve's approach, recommended for complicated reasons.
  Suggestion: what about using the official Julia Docker as the base rather than create it from scratch? There isn't a Ubuntu Julia but there is a Debian base.
  docker run -it --rm Julia
  
  or
  docker pull julia
  
  or via a Dockerfile,
  FROM Julia:buster
  
  or
  FROM Julia:latest
  
  
  user10775: You just need to make sure you include the required library files when you install Atria. Since you're not building any software (i.e. using make), the usual way is to simply move the directory under /opt and add the executable(s) to your PATH using the ENV keyword. Note that Julia comes bundled with Atria, so all you need is:
  FROM ubuntu:22.04
  
  RUN apt-get update && apt-get install -y \
      bowtie2 \
      openjdk-8-jdk \
      pbzip2 \
      pigz \
      python3.10 \
      python3-pip \
      python3-biopython \
      wget \
      && apt-get clean \
      && rm -rf /var/lib/apt/lists/*
  
  # Install RSeQC
  RUN pip3 install --no-cache-dir RSeQC
  
  # Install Atria
  RUN wget -q https://github.com/cihga39871/Atria/releases/download/v3.1.2/atria-3.1.2-linux.tar.gz \
      && tar xf atria-3.1.2-linux.tar.gz \
      && mv atria-3.1.2 /opt/atria
  
  # Install findtail
  RUN wget -q https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/findtail/findtail_v1.01 \
      && chmod +x findtail_v1.01 \
      && mv findtail_v1.01 /usr/local/bin/findtail 
  
  # Add the Atria executable to the PATH
  ENV PATH="/opt/atria/bin:${PATH}"
  
  
original_text: 16328: <p>I'm trying to build a Dockerfile. It has a tool called Atria that utilizes Julia. Since Ubuntu 22.04 does not have Julia package, I had to resort to installing it. The following is the Dockerfile:</p>
  <pre><code>FROM ubuntu:22.04
  
  # Install tzdata
  RUN apt-get update &amp;&amp;\
      DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata
  
  # Install Python, Bowtie2 and Java
  RUN apt-get install -y python3.10 python3-pip \ 
      openjdk-8-jdk  \ 
      bowtie2 \ 
      wget
  
  RUN  apt-get install --yes --no-install-recommends \
       zlib1g-dev \
       libbz2-dev \
       liblzma-dev  
  
  # Install RSeQC
  RUN pip3 install RSeQC
  
  # Install biopython=1.80
  RUN pip3 install biopython
  
  #Install Julia
  RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.8/julia-1.8.1-linux-x86_64.tar.gz &amp;&amp; \
      tar zxvf julia-1.8.1-linux-x86_64.tar.gz &amp;&amp; \
      mv julia-1.8.1/bin/julia /usr/local/bin/julia &amp;&amp; \
      chmod +x /usr/local/bin/julia
  
  RUN /sbin/ldconfig -v
  
  # Install Atria
  RUN wget https://github.com/cihga39871/Atria/releases/download/v3.1.2/atria-3.1.2-linux.tar.gz &amp;&amp; \
      tar -zxf atria-3.1.2-linux.tar.gz &amp;&amp; \
      mv atria-3.1.2/bin/atria /usr/local/bin/atria &amp;&amp; \
      chmod +x /usr/local/bin/atria
  
  #Atria dependencies
  RUN  apt-get install pigz pbzip2
  
  # Install findtail
   RUN wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/findtail/findtail_v1.01 &amp;&amp; \
       mv findtail_v1.01 /usr/local/bin/findtail_v1.01 &amp;&amp; \
       chmod +x /usr/local/bin/findtail_v1.01 
  # Cleanup 
  RUN apt clean
  </code></pre>
  <p>What I have tried so far is :</p>
  <ol>
  <li><p>Julia v1.6.7 and v1.8.4</p>
  </li>
  <li><p><code>RUN /sbin/ldconfig -v</code> as suggested <a href="https://itsfoss.com/solve-open-shared-object-file-quick-tip/" rel="nofollow noreferrer">here</a></p>
  </li>
  </ol>
  <p>How to fix it? Should I try to install Julia using PPA?</p>
  <p>edit- The error:</p>
  <pre><code>root@b0f4b17a7c18:/# atria
  /usr/local/bin/julia: error while loading shared libraries: libjulia.so.1: cannot open shared object file: No such file or directory
  </code></pre>
  <p>It is recognizing the atria command tho.</p>
   3848: <p>Just to note <code>RUN apt clean</code>  ... is much better performed using <code>&amp;&amp; apt clean</code>, like in @Steve's approach, recommended for complicated reasons.</p>
  <p><strong>Suggestion</strong>: what about using the official Julia Docker as the base rather than create it from scratch? There isn't a Ubuntu Julia but there is a Debian base.</p>
  <pre><code>docker run -it --rm Julia
  </code></pre>
  <p>or</p>
  <pre><code>docker pull julia
  </code></pre>
  <p>or via a Dockerfile,</p>
  <pre><code>FROM Julia:buster
  </code></pre>
  <p>or</p>
  <pre><code>FROM Julia:latest
  </code></pre>
   10775: <p>You just need to make sure you include the required library files when you install Atria. Since you're not building any software (i.e. using <code>make</code>), the usual way is to simply move the directory under <code>/opt</code> and add the executable(s) to your <code>PATH</code> using the <a href="https://docs.docker.com/engine/reference/builder/#env" rel="nofollow noreferrer"><code>ENV</code></a> keyword. Note that Julia comes bundled with Atria, so all you need is:</p>
  <pre><code>FROM ubuntu:22.04
  
  RUN apt-get update &amp;&amp; apt-get install -y \
      bowtie2 \
      openjdk-8-jdk \
      pbzip2 \
      pigz \
      python3.10 \
      python3-pip \
      python3-biopython \
      wget \
      &amp;&amp; apt-get clean \
      &amp;&amp; rm -rf /var/lib/apt/lists/*
  
  # Install RSeQC
  RUN pip3 install --no-cache-dir RSeQC
  
  # Install Atria
  RUN wget -q https://github.com/cihga39871/Atria/releases/download/v3.1.2/atria-3.1.2-linux.tar.gz \
      &amp;&amp; tar xf atria-3.1.2-linux.tar.gz \
      &amp;&amp; mv atria-3.1.2 /opt/atria
  
  # Install findtail
  RUN wget -q https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/findtail/findtail_v1.01 \
      &amp;&amp; chmod +x findtail_v1.01 \
      &amp;&amp; mv findtail_v1.01 /usr/local/bin/findtail 
  
  # Add the Atria executable to the PATH
  ENV PATH=&quot;/opt/atria/bin:${PATH}&quot;
  </code></pre>
  