clustal-omega-1.2.4/src/clustal-omega.c
/**
 * @brief Sets members of given user opts struct to default values
 *
 * @param[out] prOpts
 * User opt struct to initialise
 *
 */
@brief Sets members of given user opts struct to default values

@param[out] prOpts
User opt struct to initialise
@brief Sets members of given user opts struct to default values @param [ out ] prOpts User opt struct to initialise
void
SetDefaultAlnOpts(opts_t *prOpts) {
    prOpts->bAutoOptions = FALSE;
    prOpts->pcDistmatInfile = NULL;
    prOpts->pcDistmatOutfile = NULL;
    prOpts->iClustersizes = 100; 
    prOpts->iTransitivity = 0; 
    prOpts->pcClustfile = NULL; 
    prOpts->pcPosteriorfile = NULL; 
    prOpts->iClusteringType = CLUSTERING_UPGMA;
    prOpts->iPairDistType = PAIRDIST_KTUPLE;
    prOpts->bUseMbed = TRUE; 
    prOpts->bUseMbedForIteration = TRUE; 
    prOpts->bPileup = FALSE; 
    prOpts->pcGuidetreeOutfile = NULL;
    prOpts->pcGuidetreeInfile = NULL;
    prOpts->bPercID = FALSE;
    prOpts->ppcHMMInput = NULL;
    prOpts->iHMMInputFiles = 0;
    prOpts->pcHMMBatch = NULL; 
    prOpts->iNumIterations = 0;
    prOpts->bIterationsAuto = FALSE;
    prOpts->iMaxGuidetreeIterations = INT_MAX;
    prOpts->iMaxHMMIterations = INT_MAX;
    SetDefaultHhalignPara(& prOpts->rHhalignPara);
 }
void SetDefaultAlnOpts ( opts_t * prOpts ) { prOpts -> bAutoOptions = FALSE ; prOpts -> pcDistmatInfile = NULL ; prOpts -> pcDistmatOutfile = NULL ; prOpts -> iClustersizes = 100 ; prOpts -> iTransitivity = 0 ; prOpts -> pcClustfile = NULL ; prOpts -> pcPosteriorfile = NULL ; prOpts -> iClusteringType = CLUSTERING_UPGMA ; prOpts -> iPairDistType = PAIRDIST_KTUPLE ; prOpts -> bUseMbed = TRUE ; prOpts -> bUseMbedForIteration = TRUE ; prOpts -> bPileup = FALSE ; prOpts -> pcGuidetreeOutfile = NULL ; prOpts -> pcGuidetreeInfile = NULL ; prOpts -> bPercID = FALSE ; prOpts -> ppcHMMInput = NULL ; prOpts -> iHMMInputFiles = 0 ; prOpts -> pcHMMBatch = NULL ; prOpts -> iNumIterations = 0 ; prOpts -> bIterationsAuto = FALSE ; prOpts -> iMaxGuidetreeIterations = INT_MAX ; prOpts -> iMaxHMMIterations = INT_MAX ; SetDefaultHhalignPara ( & prOpts -> rHhalignPara ) ; }
@brief Sets members of given user opts struct to default values
@brief Sets members of given user opts struct to default values
/* FS, r274 -> */ /* FS, r290 -> */ /* FS, r274 -> */ /* FS, r288 -> */ /* FS, r250 -> */ /* FS, r250 -> */ /* FS, r288 -> */ /* FS, r291 -> */