hmmer-3.3/easel/esl_sq.c
/* write_msa_with_seqmarkups()
 * Write a good MSA with sequence markups to a tmpfile in Stockholm format.
 */
write_msa_with_seqmarkups()
Write a good MSA with sequence markups to a tmpfile in Stockholm format.
write_msa_with_seqmarkups () Write a good MSA with sequence markups to a tmpfile in Stockholm format .
static void
write_msa_with_seqmarkups(FILE *ofp)
{
  fprintf(ofp, "# STOCKHOLM 1.0\n");
  fprintf(ofp, "seq1                         ACDE.FGHKLMNPQRSTVWY\n");
  fprintf(ofp, "#=GR seq1 tWS                ..<..<........>...>.\n");
  fprintf(ofp, "seq2                         ACDEGFGHKLMNPQRSTVWY\n");
  fprintf(ofp, "seq3                         ACDEGFGHKLMNPQRSTVWY\n");
  fprintf(ofp, "#=GR seq3 SS                 ...<<..>>...........\n");
  fprintf(ofp, "seq4                         ACDE.FGHKLMNPQRSTVWY\n");
  fprintf(ofp, "seq5                         ACDEGFGHKLMNPQRSTVWY\n");
  fprintf(ofp, "seq6                         ACDE.FGHKLMNPQRSTVWY\n");
  fprintf(ofp, "#=GR seq6 SS                 ........<<<..>>>....\n");
  fprintf(ofp, "#=GR seq6 tWH                .<...A...>....a.....\n");
  fprintf(ofp, "#=GR seq6 csS                .<.................>\n");  
  fprintf(ofp, "//\n");
  return;
}
static void write_msa_with_seqmarkups ( FILE * ofp ) { fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; fprintf ( ofp , " \n " ) ; return ; }
write_msa_with_seqmarkups()
 Write a good MSA with sequence markups to a tmpfile in Stockholm format.
write_msa_with_seqmarkups () Write a good MSA with sequence markups to a tmpfile in Stockholm format .