clustal-omega-1.2.4/src/clustal/hhalign_wrapper.c
/**
 * @brief FIXME
 * 
 * @note prHalignPara has to point to an already allocated instance
 *
 */
@brief FIXME

@note prHalignPara has to point to an already allocated instance
@brief FIXME @note prHalignPara has to point to an already allocated instance
void SetDefaultHhalignPara(hhalign_para *prHhalignPara)
{
    prHhalignPara->iMacRamMB = 8000;  
    prHhalignPara->bIsDna = false; 	
    prHhalignPara->bIsRna = false;	
    prHhalignPara->pca = -UNITY;
    prHhalignPara->pcb = -UNITY;
    prHhalignPara->pcc = -UNITY;
    prHhalignPara->pcw = -UNITY;
    prHhalignPara->gapb = -UNITY;
    prHhalignPara->gapd = -UNITY;
    prHhalignPara->gape = -UNITY;
    prHhalignPara->gapf = -UNITY;
    prHhalignPara->gapg = -UNITY;
    prHhalignPara->gaph = -UNITY;
    prHhalignPara->gapi = -UNITY;
    prHhalignPara->pcaV = -UNITY;
    prHhalignPara->pcbV = -UNITY;
    prHhalignPara->pccV = -UNITY;
    prHhalignPara->pcwV = -UNITY;
    prHhalignPara->gapbV = -UNITY;
    prHhalignPara->gapdV = -UNITY;
    prHhalignPara->gapeV = -UNITY;
    prHhalignPara->gapfV = -UNITY;
    prHhalignPara->gapgV = -UNITY;
    prHhalignPara->gaphV = -UNITY;
    prHhalignPara->gapiV = -UNITY;
}
void SetDefaultHhalignPara ( hhalign_para * prHhalignPara ) { prHhalignPara -> iMacRamMB = 8000 ; prHhalignPara -> bIsDna = false ; prHhalignPara -> bIsRna = false ; prHhalignPara -> pca = - UNITY ; prHhalignPara -> pcb = - UNITY ; prHhalignPara -> pcc = - UNITY ; prHhalignPara -> pcw = - UNITY ; prHhalignPara -> gapb = - UNITY ; prHhalignPara -> gapd = - UNITY ; prHhalignPara -> gape = - UNITY ; prHhalignPara -> gapf = - UNITY ; prHhalignPara -> gapg = - UNITY ; prHhalignPara -> gaph = - UNITY ; prHhalignPara -> gapi = - UNITY ; prHhalignPara -> pcaV = - UNITY ; prHhalignPara -> pcbV = - UNITY ; prHhalignPara -> pccV = - UNITY ; prHhalignPara -> pcwV = - UNITY ; prHhalignPara -> gapbV = - UNITY ; prHhalignPara -> gapdV = - UNITY ; prHhalignPara -> gapeV = - UNITY ; prHhalignPara -> gapfV = - UNITY ; prHhalignPara -> gapgV = - UNITY ; prHhalignPara -> gaphV = - UNITY ; prHhalignPara -> gapiV = - UNITY ; }
@brief FIXME
@brief FIXME
/* default|give just under 8GB to MAC algorithm, FS, 2016-04-18, went from 2GB to 8GB */ /* protein mode unless we say otherwise */