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README.md
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---
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license: mit
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configs:
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- config_name: default
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data_files:
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- split: train
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path: data/train-*
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dataset_info:
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features:
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- name: image
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dtype: image
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- name: slide_name
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dtype: string
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- name: x
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dtype: int64
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- name: y
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dtype: int64
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- name: level
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dtype: int64
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- name: patch_size
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sequence: int64
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- name: resize
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sequence: int64
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- name: embedding_vector
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sequence:
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sequence: float32
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splits:
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- name: train
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num_bytes: 7855046412.21
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num_examples: 85283
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download_size: 7915527673
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dataset_size: 7855046412.21
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---
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# Dataset Card for Histopathology Dataset
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## Dataset Summary
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This dataset contains 224x224, 512x512 and 1024x1024 patches of a group of histopathology images taken from the [CAMELYON16](http://gigadb.org/dataset/100439) dataset and embedding vectors extracted from these patches using the [Google Path Foundation](https://huggingface.co/google/path-foundation) model.
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
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## Thumbnail of Main Slide
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
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##
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---
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license: mit
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configs:
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- config_name: default
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data_files:
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- split: train
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path: data/train-*
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dataset_info:
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features:
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- name: image
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dtype: image
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- name: slide_name
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dtype: string
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- name: x
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dtype: int64
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- name: y
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dtype: int64
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- name: level
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dtype: int64
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- name: patch_size
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sequence: int64
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- name: resize
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sequence: int64
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- name: embedding_vector
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sequence:
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sequence: float32
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splits:
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- name: train
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num_bytes: 7855046412.21
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num_examples: 85283
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download_size: 7915527673
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dataset_size: 7855046412.21
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---
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# Dataset Card for Histopathology Dataset
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## Dataset Summary
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This dataset contains 224x224, 512x512 and 1024x1024 patches of a group of histopathology images taken from the [CAMELYON16](http://gigadb.org/dataset/100439) dataset and embedding vectors extracted from these patches using the [Google Path Foundation](https://huggingface.co/google/path-foundation) model.
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
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## Thumbnail of Main Slide
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
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## Usage
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```python
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from datasets import load_dataset
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dataset = load_dataset("Cilem/histopathology")
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display(dataset['train'][0]["image"])
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```
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## Supported Tasks
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Machine learning applications that can be performed using this dataset:
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* Classification
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* Segmentation
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* Image generation
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## Languages
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* English
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## Dataset Structure
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### Data Fields
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- `image`: Image of the patch.
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- `slide_name`: Main slide name of the patch.
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- `x`: X coordinate of the patch.
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- `y`: Y coordinate of the patch.
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- `level`: Level of the main slide.
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- `patch_size`: Size of the patch.
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- `resize`: Image size used to obtain embedding vector with Path foundation model.
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- `embedding_vector`: Embedding vector of the patch extracted using Path foundation model.
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## Dataset Creation
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### Source Data
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- **Original Sources**
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- [CAMELYON16](http://gigadb.org/dataset/100439): List of images taken from CAMELYON16 dataset:
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* `test_001.tif`
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* `test_002.tif`
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* `test_003.tif`
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* `test_004.tif`
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* `test_005.tif`
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* `test_006.tif`
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* `test_007.tif`
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* `test_008.tif`
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* `test_009.tif`
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- [Google Path Foundation](https://huggingface.co/google/path-foundation): Embedding vectors extracted from the patches using the Path Foundation model.
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## Considerations for Using the Data
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### Social Impact and Bias
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Attention should be paid to the Path Foundation model licenses provided by Google.
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