Many universities and seats of learning honored Heyrovský. He was elected Fellow of University College, London, in 1927, and received honorary doctorates from the Technical University, Dresden in 1955, the University of Warsaw in 1956, the University Aix-Marseille in 1959, and the University of Paris in 1960. He was granted honorary membership in the American Academy of Arts and Sciences in 1933; in the Hungarian Academy of Sciences in 1955; the Indian Academy of Sciences, Bangalore, in 1955; the Polish Academy of Sciences, Warsaw, in 1962; was elected Corresponding Member of the German Academy of Sciences, Berlin, in 1955; member of the German Academy of Natural Scientists, Leopoldina (Halle-Saale) in 1956; Foreign Member of the Royal Danish Academy of Sciences, Copenhagen, in 1962; Vice-President of the International Union of Physics from 1951 to 1957; President and first honorary member of the Polarographic Society, London; honorary member of the Polarographic Society of Japan; honorary member of the Chemical Societies of Czechoslovakia, Austria, Poland, England and India. In 1965, Heyrovský was elected a Foreign Member of the Royal Society (ForMemRS) in 1965.
In Czechoslovakia Heyrovský was awarded the State Prize, First Grade, in 1951, and in 1955 the Order of the Czechoslovak Republic.
Heyrovský lectured on polarography in the United States in 1933, the USSR in 1934, England in 1946, Sweden in 1947, the People's Republic of China in 1958, and in U.A.R. (Egypt) in 1960 and 1961.
The crater Heyrovský on the Moon is named in his honour.