In recognition of his eminent contributions in the field of organic chemistry, he has been conferred with many civil awards, including:
* Nishan-e-Imtiaz (2002) (highest national civil award)
* Hilal-e-Imtiaz (1998)
* Sitara-e-Imtiaz (1991)
* Tamgha-e-Imtiaz (1983)
* UNESCO Science Prize (1999)
* Grosse Goldene Ehrenzeischen am Bande(2007) high civil award by the Austrian government (2007)
* China, International Science and Technology Cooperation Award (2020) bestowed by Chinese President Xi Jinping in Beijing on January 7, 2020
* Academician, Chinese Academy of Sciences (2015)
* Friendship Award of China (2014)
* Vice President, The World Academy of Science (TWAS)
* Prescient, Network of Academies of Science of Organising of Islamic Conference (NASIC)
* Member, Korean Academy of Science and Technology
* Einstein Professorship, Chinese Academy of Sciences
*  Babai Urdu Award (1994)
*  Scientist of the Year Award (for 1985)/Prize Rs. 200,000 (1987)
*  FPCCI Prize for Technological Innovation (1985)
*  Engro Excellence Award (2010)
*  HEC, National Distinguished Professor (2011–present)
*  Professor Emeritus, University of Karachi (2011–present)
* Lifetime Achievement Award by University of Management and Technology, Lahore (2012)