Soil acidification can cause damage to plants and organisms in the soil. In plants, soil acidification results in smaller, less durable roots. Acidic soils sometimes damage the root tips reducing further growth. Plant height is impaired and seed germination also decreases. Soil acidification impacts plant health, resulting in reduced cover and lower plant density. Overall, stunted growth is seen in plants. Soil acidification is directly linked to a decline in endangered species of plants.
In the soil, acidification reduces microbial and macrofaunal diversity.  This can reduce soil structure decline which makes it more sensitive to erosion. There are less nutrients available in the soil, larger impact of toxic elements to plants, and consequences to soil biological functions (such as nitrogen fixation). A recent study showed that sugarcane monoculture induces soil acidity, reduces soil fertility, shifts microbial structure, and reduces its activity. Furthermore, most beneficial bacterial genera decreased significantly due to sugarcane monoculture, while beneficial fungal genera showed a reverse trend. Therefore, mitigating soil acidity, improving soil fertility, and soil enzymatic activities, including improved microbial structure with beneficial service to plants and soil, can be an effective measure to develop a sustainable sugarcane cropping system.
At a larger scale, soil acidification is linked to losses in agricultural productivity due to these effects.
Impacts of acidic water and Soil acidification on plants could be minor or in most cases major. In minor cases which do not result in fatality of plant life include; less-sensitive plants to acidic conditions and or less potent acid rain. Also in minor cases the plant will eventually die due to the acidic water lowering the plants natural pH. Acidic water enters the plant and causes important plant minerals to dissolve and get carried away; which ultimately causes the plant to die of lack of minerals for nutrition. In major cases which are more extreme; the same process of damage occurs as in minor cases, which is removal of essential minerals, but at a much quicker rate. Likewise, acid rain that falls on soil and on plant leaves causes drying of the waxy leaf cuticle; which ultimately causes rapid water loss from the plant to the outside atmosphere and results in death of the plant. To see if a plant is being affected by soil acidification, one can closely observe the plant leaves. If the leaves are green and look healthy, the soil pH is normal and acceptable for plant life. But if the plant leaves have yellowing between the veins on their leaves, that means the plant is suffering from acidification and is unhealthy. Moreover, a plant suffering from soil acidification cannot photosynthesize. Drying out of the plant due to acidic water destroy chloroplast organelles. Without being able to photosynthesize a plant cannot create nutrients for its own survival or oxygen for the survival of aerobic organisms; which affects most species of Earth and ultimately end the purpose of the plants existence.