The RT instability can be seen as the result of baroclinic torque created by the misalignment of the pressure and density gradients at the perturbed interface, as described by the two-dimensional inviscid vorticity equation, , where ω is vorticity, ρ density and p is the pressure. In this case the dominant pressure gradient is hydrostatic, resulting from the acceleration.
When in the unstable configuration, for a particular harmonic component of the initial perturbation, the torque on the interface creates vorticity that will tend to increase the misalignment of the gradient vectors. This in turn creates additional vorticity, leading to further misalignment. This concept is depicted in the figure, where it is observed that the two counter-rotating vortices have velocity fields that sum at the peak and trough of the perturbed interface. In the stable configuration, the vorticity, and thus the induced velocity field, will be in a direction that decreases the misalignment and therefore stabilizes the system. 
A much simpler explanation of the basic physics of the Rayleigh-Taylor instability can be found in Ref.20.