*Bisulfite sequencing
*DNA sequencing
*Expression cloning
*Fluorescence in situ hybridization
*Lab-on-a-chip
*Comparison of nucleic acid simulation software
*Northern blot
*Nuclear run-on assay
*Radioactivity in the life sciences
*Southern blot
*Differential centrifugation (sucrose gradient)
*Toeprinting assay
*Several bioinformatics methods, as seen in list of RNA structure prediction software