Research in different areas mention possible use cases of EPIC-seq.  Integrated analysis toolkit for whole-genome-wide features of cfDNA (INAC) compiles different tools, including EPIC-seq's PFE and NDR scores, to provide in comprehensive silico analysis of cfDNA which can be exemplified disease state and clinical outcome inference, transcriptome modeling, and copy number profiling. EPIC-seq is also mentioned to be a potential application in clinica IBD cases. It can be used for survailance of IBD in high-risk groups and precancerous development caused by IBD. It is also named as a possible superior method in clinical IBD gut damage detection, compared to the current methods.