The three main side reactions that produce impurities have in common that they decompose urea.
Urea hydrolyzes back to ammonium carbamate in the hottest stages of the synthesis plant, especially in the stripper, so residence times in these stages are designed to be short.
Biuret is formed when two molecules of urea combine with the loss of a molecule of ammonia.
Normally this reaction is suppressed in the synthesis reactor by maintaining an excess of ammonia, but after the stripper, it occurs until the temperature is reduced. Biuret is undesirable in urea fertilizer because it is toxic to crop plants to varying degrees, but it is sometimes desirable as a nitrogen source when used in animal feed.
Isocyanic acid HNCO and ammonia  results from the thermal decomposition of ammonium cyanate , which is in chemical equilibrium with urea:
This decomposition is at its worst when the urea solution is heated at low pressure, which happens when the solution is concentrated for prilling or granulation (see below). The reaction products mostly volatilize into the overhead vapours, and recombine when these condense to form urea again, which contaminates the process condensate.