The application of nanoparticles (NPs) are one of novel promising techniques to target biofilms due to their high surface-area-to-volume ratio, their ability to penetrate to the deeper layers of biofilms and the capacity to releasing antimicrobial agents in a controlled way. Studying NP-EPS interactions could provide deeper understanding on how to develop more effective nanoparticles. "smart release" nanocarriers that can penetrate biofilms and be triggered by pathogenic microenvironments to deliver drugs or multifunctional compounds, such as catalytic nanoparticles to aptamers, dendrimers, and bioactive peptides) have been developed to disrupt the EPS and the viability or metabolic activity of the embedded bacteria. Some factors that would alter the potentials of the NP to transport antimicrobial agents into the biofilm include physicochemical interactions of the NPs with EPS components, the characteristics of the water spaces (pores) within the EPS matrix and the EPS matrix viscosity. Size and surface properties (charge and functional groups) of the NPs are the major determinants of the penetration in and the interaction with the EPS. Another potential antibiofilm strategy is phage therapy. Bacteriophages, viruses that invade specific bacterial host cells, were suggested to be effective agents in penetrating biofilms. In order to reach the maximum efficacy to eradicate biofilms, therapeutic strategies need to target both the biofilm matrix components as well as the embedded microorganisms to target the complex biofilm microenvironment.