Since the invention of agriculture, humans have directly and gradually influenced the carbon cycle over century-long timescales by modifying the mixture of vegetation in the terrestrial biosphere. Over the past several centuries, direct and indirect human-caused land use and land cover change (LUCC) has led to the loss of biodiversity, which lowers ecosystems' resilience to environmental stresses and decreases their ability to remove carbon from the atmosphere. More directly, it often leads to the release of carbon from terrestrial ecosystems into the atmosphere.
Deforestation for agricultural purposes removes forests, which hold large amounts of carbon, and replaces them, generally with agricultural or urban areas. Both of these replacement land cover types store comparatively small amounts of carbon so that the net result of the transition is that more carbon stays in the atmosphere.  However, the effects on the atmosphere and overall carbon cycle can be intentionally and/or naturally reversed with reforestation.