Eventually, quantitative experiments revealed problems, including the fact that some metals gained weight after they burned, even though they were supposed to have lost phlogiston.
Some phlogiston proponents, like Robert Boyle, explained this by concluding that phlogiston has negative mass; others, such as Louis-Bernard Guyton de Morveau, gave the more conventional argument that it is lighter than air. However, a more detailed analysis based on Archimedes' principle, the densities of magnesium and its combustion product showed that just being lighter than air could not account for the increase in weight. Stahl himself did not address the problem of the metals that burn gaining weight, but those who followed his school of thought were the ones that worked on this problem.
During the eighteenth century, as it became clear that metals gained weight after they were oxidized, phlogiston was increasingly regarded as a principle rather than a material substance. By the end of the eighteenth century, for the few chemists who still used the term phlogiston, the concept was linked to hydrogen. Joseph Priestley, for example, in referring to the reaction of steam on iron, while fully acknowledging that the iron gains weight after it binds with oxygen to form a calx, iron oxide, iron also loses "the basis of inflammable air (hydrogen), and this is the substance or principle, to which we give the name phlogiston". Following Lavoisiers description of oxygen as the oxidizing principle (hence its name, from Ancient Greek: , "sharp"; , "birth" referring to oxygens supposed role in the formation of acids), Priestley described phlogiston as the alkaline principle.
Phlogiston remained the dominant theory until the 1770s when Antoine-Laurent de Lavoisier showed that combustion requires a gas that has weight (specifically, oxygen) and could be measured by means of weighing closed vessels. The use of closed vessels by Lavoisier and earlier by the Russian scientist Mikhail Lomonosov also negated the buoyancy that had disguised the weight of the gases of combustion, and culminated in the principle of mass conservation. These observations solved the mass paradox and set the stage for the new oxygen theory of combustion. The British chemist Elizabeth Fulhame demonstrated through experiment that many oxidation reactions occur only in the presence of water, that they directly involve water, and that water is regenerated and is detectable at the end of the reaction. Based on her experiments, she disagreed with some of the conclusions of Lavoisier as well as with the phlogiston theorists that he critiqued. Her book on the subject appeared in print soon after Lavoisier's execution for Farm-General membership during the French Revolution.
Experienced chemists who supported Stahl's phlogiston theory attempted to respond to the challenges suggested by Lavoisier and the newer chemists. In doing so, phlogiston theory became more complicated and assumed too much, contributing to the overall demise of the theory. Many people tried to remodel their theories on phlogiston to have the theory work with what Lavoisier was doing in his experiments. Pierre Macquer reworded his theory many times, and even though he is said to have thought the theory of phlogiston was doomed, he stood by phlogiston and tried to make the theory work.