* 2023 Analytical Scientist the Power List - Leaders and Advocates
* 2020 Society for Glycobiology Molecular and Cellular Proteomics (MCP) / American Society for Biochemistry and Molecular Biology (ASBMB) Lectureship Award
* 2019 inaugural winner of the US Human Proteome Organization Lifetime Achievement in Proteomics Award
* 2019 Analytical Scientist the Power List
* 2017 American Society for Mass Spectrometry John B. Fenn Award for a Distinguished Contribution in Mass Spectrometry
* 2016 American Association for the Advancement of Science Fellow
* 2015 Human Proteome Organization Distinguished Service Award
* 2015 German Mass Spectrometry Society (Deutsche Gesellschaft für Massenspektrometrie, DGMS) Wolfgang Paul Lecture
* 2013 Boston University The William Fairfield Warren Distinguished Professorship
* 2011 American Chemical Society Fellow
* 2010 American Chemical Society Frank H. Field and Joe L. Franklin Award for Outstanding Achievement in Mass Spectrometry
* 2009 International Mass Spectrometry Foundation Thomson Medal
* 2008 Human Proteome Organization Discovery in Proteomic Sciences Award