Ocean acidification can also have effects on marine fish larvae. It internally affects their olfactory systems, which is a crucial part of their early development. Orange clownfish larvae mostly live on oceanic reefs that are surrounded by vegetative islands. Larvae are known to use their sense of smell to detect the differences between reefs surrounded by vegetative islands and reefs not surrounded by vegetative islands. Clownfish larvae need to be able to distinguish between these two destinations to be able to find a suitable area for their growth. Another use for marine fish olfactory systems is to distinguish between their parents and other adult fish, in order to avoid inbreeding.
In an experimental aquarium facility, clownfish were sustained in non-manipulated seawater with pH 8.15 ± 0.07, which is similar to our current ocean's pH. To test for effects of different pH levels, the seawater was modified to two other pH levels, which corresponded with climate change models that predict future atmospheric  levels. In the year 2100 the model projects possible  levels of 1,000 ppm, which correlates with the pH of 7.8 ± 0.05. 
This experiment showed that when larvae are exposed to a pH of 7.8 ± 0.05 their reaction to environmental cues differs drastically from their reaction to cues at pH equal to current ocean levels. At pH 7.6 ± 0.05 larvae had no reaction to any type of cue. However, a meta-analysis published in 2022 found that the effect sizes of published studies testing for ocean acidification effects on fish behavior have declined by an order of magnitude over the past decade, and have been negligible for the past five years.
Eel embryos, a "critically endangered" species yet profound in aquaculture, are also being affected by ocean acidification, specifically the European eel. Although they spend most of their lives in fresh water, usually in rivers, streams, or estuaries, they go to spawn and die in the Sargasso Sea. Here is where European eels are experiencing the effects of acidification in one of their key life stages. 
Fish embryos and larvae are usually more sensitive to pH changes than adults, as organs for pH regulation are not full developed. Because of this, European eel embryos are more vulnerable to changes in pH in the Sargasso Sea. A study of the European Eel in the Sargasso Sea was conducted in 2021 to analyze the specific effects of ocean acidification on embryos. The study found that exposure to predicted end-of-century ocean pCO conditions may affect normal development of this species in nature during sensitive early life history stages with limited physiological response capacities, while extreme acidification would negatively influence embryonic survival and development under hatchery conditions.