Bharat has been awarded many prizes and fellowships. These include a 2018 Vallee Research Scholarship, the 2019 EMBL John Kendrew Award the 2020 Philip Leverhulme Prize for Biological Sciences, the 2021 Eppendorf Award for Young European Investigators, and the 2021 Lister Prize, the 2022 Colworth Medal from the Biochemical Society and the 2023 Fleming Prize from the Microbiology Society.