Nitrogenous compounds have a variety of sources including washout of oxides of nitrogen from the atmosphere, some geological inputs and some from macrophyte and algal nitrogen fixation. However, for many rivers in the proximity of humans, the largest input is from sewage whether treated or untreated. The nitrogen derives from breakdown products of proteins found in urine and faeces. These products, being very soluble, often pass through sewage treatment process and are discharged into rivers as a component of sewage treatment effluent. Nitrogen may be in the form of nitrate, nitrite, ammonia or ammonium salts or what is termed albuminoid nitrogen or nitrogen still within an organic proteinoid molecule.
The differing forms of nitrogen are relatively stable in most river systems with nitrite slowly transforming into nitrate in well oxygenated rivers and ammonia transforming into nitrite/ nitrate. However, the process are slow in cool rivers and reduction in concentration may more often be attributed to simple dilution. All forms of nitrogen are taken up by macrophytes and algae and elevated levels of nitrogen are often associated with overgrowths of plants or eutrophication. These can have the effect of blocking channels and inhibiting navigation. However, ecologically, the more significant effect is on dissolved oxygen concentrations which may become super-saturated during daylight due to plant photosynthesis but then drop to very low levels during darkness as plant respiration uses up the dissolved oxygen. Coupled with the release of oxygen in photosynthesis is the creation of bi-carbonate ions which cause a steep rise in pH and this is matched in darkness as carbon dioxide is released through respiration which substantially lowers the pH. Thus high levels of nitrogenous compounds tends to lead to eutrophication with extreme variations in parameters which in turn can substantially degrade the ecological worth of the watercourse.
Ammonium ions also have a toxic effect, especially on fish. The toxicity of ammonia is dependent on both pH and temperature and an added complexity is the buffering effect of the blood/water interface across the gill membrane which masks any additional toxicity over about pH 8.0. The management of river chemistry to avoid ecological damage is particularly difficult in the case of ammonia as a wide range of potential scenarios of concentration, pH and temperature have to be considered and the diurnal pH fluctuation caused by photosynthesis considered. On warm summer days with high-bi-carbonate concentrations unexpectedly toxic conditions can be created.