scout/adapter/mongo/clinvar.py
def get_clinvar_id(self, submission_id):
        """Returns the official Clinvar submission ID for a submission object

            Args:
                submission_id(str): submission_id(str) : id of the submission

            Returns:
                clinvar_subm_id(str): a string with a format: SUB[0-9]. It is obtained from clinvar portal when starting a new submission

        """
        submission_obj = self.clinvar_submission_collection.find_one({'_id': ObjectId(submission_id)})
        clinvar_subm_id = submission_obj.get('clinvar_subm_id') # This key does not exist if it was not previously provided by user
        return clinvar_subm_id
def get_clinvar_id(self, submission_id):
        submission_obj = self.clinvar_submission_collection.find_one({'_id': ObjectId(submission_id)})
        clinvar_subm_id = submission_obj.get('clinvar_subm_id') # This key does not exist if it was not previously provided by user
        return clinvar_subm_id
def get_clinvar_id ( self , submission_id ) : submission_obj = self . clinvar_submission_collection . find_one ( { '_id' : ObjectId ( submission_id ) } ) clinvar_subm_id = submission_obj . get ( 'clinvar_subm_id' ) # This key does not exist if it was not previously provided by user return clinvar_subm_id
Returns the official Clinvar submission ID for a submission object

            Args:
                submission_id(str): submission_id(str) : id of the submission

            Returns:
                clinvar_subm_id(str): a string with a format: SUB[0-9]. It is obtained from clinvar portal when starting a new submission
Returns the official Clinvar submission ID for a submission object