examples/example_24_large_scale_brian2_simulation/clusternet.py
def _build_model_eqs(traj):
        """Computes model equations for the excitatory and inhibitory population.

        Equation objects are created by fusing `model.eqs` and `model.synaptic.eqs`
        and replacing `PRE` by `i` (for inhibitory) or `e` (for excitatory) depending
        on the type of population.

        :return: Dictionary with 'i' equation object for inhibitory neurons and 'e' for excitatory

        """
        model_eqs = traj.model.eqs
        post_eqs={}
        for name_post in ['i','e']:
            variables_dict ={}
            new_model_eqs=model_eqs.replace('POST', name_post)
            for name_pre in ['i', 'e']:
                conn_eqs = traj.model.synaptic.eqs
                new_conn_eqs = conn_eqs.replace('PRE', name_pre)
                new_model_eqs += new_conn_eqs

                tau1 = traj.model.synaptic['tau1']
                tau2 = traj.model.synaptic['tau2_'+name_pre]

                normalization = (tau1-tau2) / tau2
                invtau1=1.0/tau1
                invtau2 = 1.0/tau2

                variables_dict['invtau1_'+name_pre] = invtau1
                variables_dict['invtau2_'+name_pre] = invtau2
                variables_dict['normalization_'+name_pre] = normalization
                variables_dict['tau1_'+name_pre] = tau1
                variables_dict['tau2_'+name_pre] = tau2

            variables_dict['tau_'+name_post] = traj.model['tau_'+name_post]

            post_eqs[name_post] = Equations(new_model_eqs, **variables_dict)

        return post_eqs
def _build_model_eqs(traj):
        model_eqs = traj.model.eqs
        post_eqs={}
        for name_post in ['i','e']:
            variables_dict ={}
            new_model_eqs=model_eqs.replace('POST', name_post)
            for name_pre in ['i', 'e']:
                conn_eqs = traj.model.synaptic.eqs
                new_conn_eqs = conn_eqs.replace('PRE', name_pre)
                new_model_eqs += new_conn_eqs

                tau1 = traj.model.synaptic['tau1']
                tau2 = traj.model.synaptic['tau2_'+name_pre]

                normalization = (tau1-tau2) / tau2
                invtau1=1.0/tau1
                invtau2 = 1.0/tau2

                variables_dict['invtau1_'+name_pre] = invtau1
                variables_dict['invtau2_'+name_pre] = invtau2
                variables_dict['normalization_'+name_pre] = normalization
                variables_dict['tau1_'+name_pre] = tau1
                variables_dict['tau2_'+name_pre] = tau2

            variables_dict['tau_'+name_post] = traj.model['tau_'+name_post]

            post_eqs[name_post] = Equations(new_model_eqs, **variables_dict)

        return post_eqs
def _build_model_eqs ( traj ) : model_eqs = traj . model . eqs post_eqs = { } for name_post in [ 'i' , 'e' ] : variables_dict = { } new_model_eqs = model_eqs . replace ( 'POST' , name_post ) for name_pre in [ 'i' , 'e' ] : conn_eqs = traj . model . synaptic . eqs new_conn_eqs = conn_eqs . replace ( 'PRE' , name_pre ) new_model_eqs += new_conn_eqs tau1 = traj . model . synaptic [ 'tau1' ] tau2 = traj . model . synaptic [ 'tau2_' + name_pre ] normalization = ( tau1 - tau2 ) / tau2 invtau1 = 1.0 / tau1 invtau2 = 1.0 / tau2 variables_dict [ 'invtau1_' + name_pre ] = invtau1 variables_dict [ 'invtau2_' + name_pre ] = invtau2 variables_dict [ 'normalization_' + name_pre ] = normalization variables_dict [ 'tau1_' + name_pre ] = tau1 variables_dict [ 'tau2_' + name_pre ] = tau2 variables_dict [ 'tau_' + name_post ] = traj . model [ 'tau_' + name_post ] post_eqs [ name_post ] = Equations ( new_model_eqs , * * variables_dict ) return post_eqs
Computes model equations for the excitatory and inhibitory population.

        Equation objects are created by fusing `model.eqs` and `model.synaptic.eqs`
        and replacing `PRE` by `i` (for inhibitory) or `e` (for excitatory) depending
        on the type of population.

        :return: Dictionary with 'i' equation object for inhibitory neurons and 'e' for excitatory
Computes model equations for the excitatory and inhibitory population .