scout/server/blueprints/variants/views.py
def str_variants(institute_id, case_name):
    """Display a list of STR variants."""
    page = int(request.args.get('page', 1))
    variant_type = request.args.get('variant_type', 'clinical')

    form = StrFiltersForm(request.args)

    institute_obj, case_obj = institute_and_case(store, institute_id, case_name)

    query = form.data
    query['variant_type'] = variant_type

    variants_query = store.variants(case_obj['_id'], category='str',
        query=query)
    data = controllers.str_variants(store, institute_obj, case_obj,
        variants_query, page)
    return dict(institute=institute_obj, case=case_obj,
        variant_type = variant_type, form=form, page=page, **data)
def str_variants(institute_id, case_name):
    page = int(request.args.get('page', 1))
    variant_type = request.args.get('variant_type', 'clinical')

    form = StrFiltersForm(request.args)

    institute_obj, case_obj = institute_and_case(store, institute_id, case_name)

    query = form.data
    query['variant_type'] = variant_type

    variants_query = store.variants(case_obj['_id'], category='str',
        query=query)
    data = controllers.str_variants(store, institute_obj, case_obj,
        variants_query, page)
    return dict(institute=institute_obj, case=case_obj,
        variant_type = variant_type, form=form, page=page, **data)
def str_variants ( institute_id , case_name ) : page = int ( request . args . get ( 'page' , 1 ) ) variant_type = request . args . get ( 'variant_type' , 'clinical' ) form = StrFiltersForm ( request . args ) institute_obj , case_obj = institute_and_case ( store , institute_id , case_name ) query = form . data query [ 'variant_type' ] = variant_type variants_query = store . variants ( case_obj [ '_id' ] , category = 'str' , query = query ) data = controllers . str_variants ( store , institute_obj , case_obj , variants_query , page ) return dict ( institute = institute_obj , case = case_obj , variant_type = variant_type , form = form , page = page , * * data )
Display a list of STR variants.
Display a list of STR variants .