scout/parse/variant/conservation.py
def parse_conservations(variant):
    """Parse the conservation predictors

        Args:
            variant(dict): A variant dictionary

        Returns:
            conservations(dict): A dictionary with the conservations
    """
    conservations = {}

    conservations['gerp'] = parse_conservation(
                                            variant,
                                            'dbNSFP_GERP___RS'
                                        )
    conservations['phast'] = parse_conservation(
                                            variant,
                                            'dbNSFP_phastCons100way_vertebrate'
                                        )
    conservations['phylop'] = parse_conservation(
                                            variant,
                                            'dbNSFP_phyloP100way_vertebrate'
                                        )
    return conservations
def parse_conservations(variant):
    conservations = {}

    conservations['gerp'] = parse_conservation(
                                            variant,
                                            'dbNSFP_GERP___RS'
                                        )
    conservations['phast'] = parse_conservation(
                                            variant,
                                            'dbNSFP_phastCons100way_vertebrate'
                                        )
    conservations['phylop'] = parse_conservation(
                                            variant,
                                            'dbNSFP_phyloP100way_vertebrate'
                                        )
    return conservations
def parse_conservations ( variant ) : conservations = { } conservations [ 'gerp' ] = parse_conservation ( variant , 'dbNSFP_GERP___RS' ) conservations [ 'phast' ] = parse_conservation ( variant , 'dbNSFP_phastCons100way_vertebrate' ) conservations [ 'phylop' ] = parse_conservation ( variant , 'dbNSFP_phyloP100way_vertebrate' ) return conservations
Parse the conservation predictors

        Args:
            variant(dict): A variant dictionary

        Returns:
            conservations(dict): A dictionary with the conservations
Parse the conservation predictors