flowcraft/templates/process_viral_assembly.py
def write_report(self, output_file):
        """Writes a report with the test results for the current assembly

        Parameters
        ----------
        output_file : str
            Name of the output assembly file.

        """

        logger.debug("Writing the assembly report into: {}".format(
            output_file))
        with open(output_file, "w") as fh:

            for contig_id, vals in self.report.items():
                fh.write("{}, {}\\n".format(contig_id, vals))
def write_report(self, output_file):
        logger.debug("Writing the assembly report into: {}".format(
            output_file))
        with open(output_file, "w") as fh:

            for contig_id, vals in self.report.items():
                fh.write("{}, {}\\n".format(contig_id, vals))
def write_report ( self , output_file ) : logger . debug ( "Writing the assembly report into: {}" . format ( output_file ) ) with open ( output_file , "w" ) as fh : for contig_id , vals in self . report . items ( ) : fh . write ( "{}, {}\\n" . format ( contig_id , vals ) )
Writes a report with the test results for the current assembly

        Parameters
        ----------
        output_file : str
            Name of the output assembly file.
Writes a report with the test results for the current assembly