scout/adapter/mongo/panel.py
def update_panel(self, panel_obj, version=None, date_obj=None):
        """Replace a existing gene panel with a new one

        Keeps the object id

        Args:
            panel_obj(dict)
            version(float)
            date_obj(datetime.datetime)

        Returns:
            updated_panel(dict)
        """
        LOG.info("Updating panel %s", panel_obj['panel_name'])
        # update date of panel to "today"
        date = panel_obj['date']
        if version:
            LOG.info("Updating version from {0} to version {1}".format(
                panel_obj['version'], version))
            panel_obj['version'] = version
            # Updating version should not update date
            if date_obj:
                date = date_obj
        else:
            date = date_obj or dt.datetime.now()
        panel_obj['date'] = date

        updated_panel = self.panel_collection.find_one_and_replace(
            {'_id': panel_obj['_id']},
            panel_obj,
            return_document=pymongo.ReturnDocument.AFTER
        )

        return updated_panel
def update_panel(self, panel_obj, version=None, date_obj=None):
        LOG.info("Updating panel %s", panel_obj['panel_name'])
        # update date of panel to "today"
        date = panel_obj['date']
        if version:
            LOG.info("Updating version from {0} to version {1}".format(
                panel_obj['version'], version))
            panel_obj['version'] = version
            # Updating version should not update date
            if date_obj:
                date = date_obj
        else:
            date = date_obj or dt.datetime.now()
        panel_obj['date'] = date

        updated_panel = self.panel_collection.find_one_and_replace(
            {'_id': panel_obj['_id']},
            panel_obj,
            return_document=pymongo.ReturnDocument.AFTER
        )

        return updated_panel
def update_panel ( self , panel_obj , version = None , date_obj = None ) : LOG . info ( "Updating panel %s" , panel_obj [ 'panel_name' ] ) # update date of panel to "today" date = panel_obj [ 'date' ] if version : LOG . info ( "Updating version from {0} to version {1}" . format ( panel_obj [ 'version' ] , version ) ) panel_obj [ 'version' ] = version # Updating version should not update date if date_obj : date = date_obj else : date = date_obj or dt . datetime . now ( ) panel_obj [ 'date' ] = date updated_panel = self . panel_collection . find_one_and_replace ( { '_id' : panel_obj [ '_id' ] } , panel_obj , return_document = pymongo . ReturnDocument . AFTER ) return updated_panel
Replace a existing gene panel with a new one

        Keeps the object id

        Args:
            panel_obj(dict)
            version(float)
            date_obj(datetime.datetime)

        Returns:
            updated_panel(dict)
Replace a existing gene panel with a new one