scout/commands/view/diseases.py
def diseases(context):
    """Show all diseases in the database"""
    LOG.info("Running scout view diseases")
    adapter = context.obj['adapter']

    disease_objs = adapter.disease_terms()

    nr_diseases = disease_objs.count()
    if nr_diseases == 0:
        click.echo("No diseases found")
    else:
        click.echo("Disease")
        for disease_obj in adapter.disease_terms():
            click.echo("{0}".format(disease_obj['_id']))
        LOG.info("{0} diseases found".format(nr_diseases))
def diseases(context):
    LOG.info("Running scout view diseases")
    adapter = context.obj['adapter']

    disease_objs = adapter.disease_terms()

    nr_diseases = disease_objs.count()
    if nr_diseases == 0:
        click.echo("No diseases found")
    else:
        click.echo("Disease")
        for disease_obj in adapter.disease_terms():
            click.echo("{0}".format(disease_obj['_id']))
        LOG.info("{0} diseases found".format(nr_diseases))
def diseases ( context ) : LOG . info ( "Running scout view diseases" ) adapter = context . obj [ 'adapter' ] disease_objs = adapter . disease_terms ( ) nr_diseases = disease_objs . count ( ) if nr_diseases == 0 : click . echo ( "No diseases found" ) else : click . echo ( "Disease" ) for disease_obj in adapter . disease_terms ( ) : click . echo ( "{0}" . format ( disease_obj [ '_id' ] ) ) LOG . info ( "{0} diseases found" . format ( nr_diseases ) )
Show all diseases in the database
Show all diseases in the database