scout/commands/export/hpo.py
def hpo_genes(context, hpo_term):
    """Export a list of genes based on hpo terms"""
    LOG.info("Running scout export hpo_genes")
    adapter = context.obj['adapter']
    
    header = ["#Gene_id\tCount"]

    if not hpo_term:
        LOG.warning("Please use at least one hpo term")
        context.abort()

    for line in header:
        click.echo(line)

    for term in adapter.generate_hpo_gene_list(*hpo_term):
        click.echo("{0}\t{1}".format(term[0], term[1]))
def hpo_genes(context, hpo_term):
    LOG.info("Running scout export hpo_genes")
    adapter = context.obj['adapter']
    
    header = ["#Gene_id\tCount"]

    if not hpo_term:
        LOG.warning("Please use at least one hpo term")
        context.abort()

    for line in header:
        click.echo(line)

    for term in adapter.generate_hpo_gene_list(*hpo_term):
        click.echo("{0}\t{1}".format(term[0], term[1]))
def hpo_genes ( context , hpo_term ) : LOG . info ( "Running scout export hpo_genes" ) adapter = context . obj [ 'adapter' ] header = [ "#Gene_id\tCount" ] if not hpo_term : LOG . warning ( "Please use at least one hpo term" ) context . abort ( ) for line in header : click . echo ( line ) for term in adapter . generate_hpo_gene_list ( * hpo_term ) : click . echo ( "{0}\t{1}" . format ( term [ 0 ] , term [ 1 ] ) )
Export a list of genes based on hpo terms
Export a list of genes based on hpo terms