flowcraft/templates/megahit.py
def clean_up(fastq):
    """
    Cleans the temporary fastq files. If they are symlinks, the link
    source is removed

    Parameters
    ----------
    fastq : list
        List of fastq files.
    """

    for fq in fastq:
        # Get real path of fastq files, following symlinks
        rp = os.path.realpath(fq)
        logger.debug("Removing temporary fastq file path: {}".format(rp))
        if re.match(".*/work/.{2}/.{30}/.*", rp):
            os.remove(rp)
def clean_up(fastq):
    for fq in fastq:
        # Get real path of fastq files, following symlinks
        rp = os.path.realpath(fq)
        logger.debug("Removing temporary fastq file path: {}".format(rp))
        if re.match(".*/work/.{2}/.{30}/.*", rp):
            os.remove(rp)
def clean_up ( fastq ) : for fq in fastq : # Get real path of fastq files, following symlinks rp = os . path . realpath ( fq ) logger . debug ( "Removing temporary fastq file path: {}" . format ( rp ) ) if re . match ( ".*/work/.{2}/.{30}/.*" , rp ) : os . remove ( rp )
Cleans the temporary fastq files. If they are symlinks, the link
    source is removed

    Parameters
    ----------
    fastq : list
        List of fastq files.
Cleans the temporary fastq files . If they are symlinks the link source is removed