scout/commands/update/institute.py
def institute(context, institute_id, sanger_recipient, coverage_cutoff, frequency_cutoff, 
              display_name, remove_sanger):
    """
    Update an institute
    """
    adapter = context.obj['adapter']
    LOG.info("Running scout update institute")
    
    try:
        adapter.update_institute(
            internal_id=institute_id, 
            sanger_recipient=sanger_recipient, 
            coverage_cutoff=coverage_cutoff, 
            frequency_cutoff=frequency_cutoff, 
            display_name=display_name,
            remove_sanger=remove_sanger,
            )
    except Exception as err:
        LOG.warning(err)
        context.abort()
def institute(context, institute_id, sanger_recipient, coverage_cutoff, frequency_cutoff, 
              display_name, remove_sanger):
    adapter = context.obj['adapter']
    LOG.info("Running scout update institute")
    
    try:
        adapter.update_institute(
            internal_id=institute_id, 
            sanger_recipient=sanger_recipient, 
            coverage_cutoff=coverage_cutoff, 
            frequency_cutoff=frequency_cutoff, 
            display_name=display_name,
            remove_sanger=remove_sanger,
            )
    except Exception as err:
        LOG.warning(err)
        context.abort()
def institute ( context , institute_id , sanger_recipient , coverage_cutoff , frequency_cutoff , display_name , remove_sanger ) : adapter = context . obj [ 'adapter' ] LOG . info ( "Running scout update institute" ) try : adapter . update_institute ( internal_id = institute_id , sanger_recipient = sanger_recipient , coverage_cutoff = coverage_cutoff , frequency_cutoff = frequency_cutoff , display_name = display_name , remove_sanger = remove_sanger , ) except Exception as err : LOG . warning ( err ) context . abort ( )
Update an institute
Update an institute