pypet/storageservice.py
def _grp_store_group(self, traj_group, store_data=pypetconstants.STORE_DATA,
                         with_links=True, recursive=False, max_depth=None,
                         _hdf5_group=None, _newly_created=False):
        """Stores a group node.

        For group nodes only annotations and comments need to be stored.

        """
        if store_data == pypetconstants.STORE_NOTHING:
            return
        elif store_data == pypetconstants.STORE_DATA_SKIPPING and traj_group._stored:
            self._logger.debug('Already found `%s` on disk I will not store it!' %
                                   traj_group.v_full_name)
        elif not recursive:
            if _hdf5_group is None:
                _hdf5_group, _newly_created = self._all_create_or_get_groups(traj_group.v_full_name)

            overwrite = store_data == pypetconstants.OVERWRITE_DATA

            if (traj_group.v_comment != '' and
                    (HDF5StorageService.COMMENT not in _hdf5_group._v_attrs or overwrite)):
                setattr(_hdf5_group._v_attrs, HDF5StorageService.COMMENT, traj_group.v_comment)

            if ((_newly_created or overwrite) and
                type(traj_group) not in (nn.NNGroupNode, nn.ConfigGroup, nn.ParameterGroup,
                                             nn.DerivedParameterGroup, nn.ResultGroup)):
                # We only store the name of the class if it is not one of the standard groups,
                # that are always used.
                setattr(_hdf5_group._v_attrs, HDF5StorageService.CLASS_NAME,
                        traj_group.f_get_class_name())

            self._ann_store_annotations(traj_group, _hdf5_group, overwrite=overwrite)
            self._hdf5file.flush()
            traj_group._stored = True

            # Signal completed node loading
            self._node_processing_timer.signal_update()

        if recursive:
            parent_traj_group = traj_group.f_get_parent()
            parent_hdf5_group = self._all_create_or_get_groups(parent_traj_group.v_full_name)[0]

            self._tree_store_nodes_dfs(parent_traj_group, traj_group.v_name, store_data=store_data,
                                       with_links=with_links, recursive=recursive,
                                       max_depth=max_depth, current_depth=0,
                                       parent_hdf5_group=parent_hdf5_group)
def _grp_store_group(self, traj_group, store_data=pypetconstants.STORE_DATA,
                         with_links=True, recursive=False, max_depth=None,
                         _hdf5_group=None, _newly_created=False):
        if store_data == pypetconstants.STORE_NOTHING:
            return
        elif store_data == pypetconstants.STORE_DATA_SKIPPING and traj_group._stored:
            self._logger.debug('Already found `%s` on disk I will not store it!' %
                                   traj_group.v_full_name)
        elif not recursive:
            if _hdf5_group is None:
                _hdf5_group, _newly_created = self._all_create_or_get_groups(traj_group.v_full_name)

            overwrite = store_data == pypetconstants.OVERWRITE_DATA

            if (traj_group.v_comment != '' and
                    (HDF5StorageService.COMMENT not in _hdf5_group._v_attrs or overwrite)):
                setattr(_hdf5_group._v_attrs, HDF5StorageService.COMMENT, traj_group.v_comment)

            if ((_newly_created or overwrite) and
                type(traj_group) not in (nn.NNGroupNode, nn.ConfigGroup, nn.ParameterGroup,
                                             nn.DerivedParameterGroup, nn.ResultGroup)):
                # We only store the name of the class if it is not one of the standard groups,
                # that are always used.
                setattr(_hdf5_group._v_attrs, HDF5StorageService.CLASS_NAME,
                        traj_group.f_get_class_name())

            self._ann_store_annotations(traj_group, _hdf5_group, overwrite=overwrite)
            self._hdf5file.flush()
            traj_group._stored = True

            # Signal completed node loading
            self._node_processing_timer.signal_update()

        if recursive:
            parent_traj_group = traj_group.f_get_parent()
            parent_hdf5_group = self._all_create_or_get_groups(parent_traj_group.v_full_name)[0]

            self._tree_store_nodes_dfs(parent_traj_group, traj_group.v_name, store_data=store_data,
                                       with_links=with_links, recursive=recursive,
                                       max_depth=max_depth, current_depth=0,
                                       parent_hdf5_group=parent_hdf5_group)
def _grp_store_group ( self , traj_group , store_data = pypetconstants . STORE_DATA , with_links = True , recursive = False , max_depth = None , _hdf5_group = None , _newly_created = False ) : if store_data == pypetconstants . STORE_NOTHING : return elif store_data == pypetconstants . STORE_DATA_SKIPPING and traj_group . _stored : self . _logger . debug ( 'Already found `%s` on disk I will not store it!' % traj_group . v_full_name ) elif not recursive : if _hdf5_group is None : _hdf5_group , _newly_created = self . _all_create_or_get_groups ( traj_group . v_full_name ) overwrite = store_data == pypetconstants . OVERWRITE_DATA if ( traj_group . v_comment != '' and ( HDF5StorageService . COMMENT not in _hdf5_group . _v_attrs or overwrite ) ) : setattr ( _hdf5_group . _v_attrs , HDF5StorageService . COMMENT , traj_group . v_comment ) if ( ( _newly_created or overwrite ) and type ( traj_group ) not in ( nn . NNGroupNode , nn . ConfigGroup , nn . ParameterGroup , nn . DerivedParameterGroup , nn . ResultGroup ) ) : # We only store the name of the class if it is not one of the standard groups, # that are always used. setattr ( _hdf5_group . _v_attrs , HDF5StorageService . CLASS_NAME , traj_group . f_get_class_name ( ) ) self . _ann_store_annotations ( traj_group , _hdf5_group , overwrite = overwrite ) self . _hdf5file . flush ( ) traj_group . _stored = True # Signal completed node loading self . _node_processing_timer . signal_update ( ) if recursive : parent_traj_group = traj_group . f_get_parent ( ) parent_hdf5_group = self . _all_create_or_get_groups ( parent_traj_group . v_full_name ) [ 0 ] self . _tree_store_nodes_dfs ( parent_traj_group , traj_group . v_name , store_data = store_data , with_links = with_links , recursive = recursive , max_depth = max_depth , current_depth = 0 , parent_hdf5_group = parent_hdf5_group )
Stores a group node.

        For group nodes only annotations and comments need to be stored.
Stores a group node .