flowcraft/templates/process_viral_assembly.py
def _parse_coverage(header_str):
        """Attempts to retrieve the coverage value from the header string.

        It splits the header by "_" and then screens the list backwards in
        search of the first float value. This will be interpreted as the
        coverage value. If it cannot find a float value, it returns None.
        This search methodology is based on the strings of assemblers
        like spades and skesa that put the mean kmer coverage for each
        contig in its corresponding fasta header.

        Parameters
        ----------
        header_str : str
            String

        Returns
        -------
        float or None
            The coverage value for the contig. None if it cannot find the
            value in the provide string.
        """

        cov = None
        for i in header_str.split("_")[::-1]:
            try:
                cov = float(i)
                break
            except ValueError:
                continue

        return cov
def _parse_coverage(header_str):
        cov = None
        for i in header_str.split("_")[::-1]:
            try:
                cov = float(i)
                break
            except ValueError:
                continue

        return cov
def _parse_coverage ( header_str ) : cov = None for i in header_str . split ( "_" ) [ : : - 1 ] : try : cov = float ( i ) break except ValueError : continue return cov
Attempts to retrieve the coverage value from the header string.

        It splits the header by "_" and then screens the list backwards in
        search of the first float value. This will be interpreted as the
        coverage value. If it cannot find a float value, it returns None.
        This search methodology is based on the strings of assemblers
        like spades and skesa that put the mean kmer coverage for each
        contig in its corresponding fasta header.

        Parameters
        ----------
        header_str : str
            String

        Returns
        -------
        float or None
            The coverage value for the contig. None if it cannot find the
            value in the provide string.
Attempts to retrieve the coverage value from the header string .