<s> import argparse <EOL> import cStringIO <EOL> import urllib2 <EOL> import sys <EOL> import zlib <EOL> import os <EOL> import re <EOL> import cv2 <EOL> import Image <EOL> import MySQLdb <EOL> import numpy as np <EOL> sys . path += [ os . path . abspath ( '<STR_LIT>' ) ] <EOL> import OCP . settings <EOL> os . environ [ '<STR_LIT>' ] = '<STR_LIT>' <EOL> from django . conf import settings <EOL> import ocpcarest <EOL> import zindex <EOL> import imagecube <EOL> class MitraIngest : <EOL> def __init__ ( self , token , path , resolution , channel ) : <EOL> self . path = path <EOL> self . resolution = resolution <EOL> [ self . db , self . proj , self . projdb ] = ocpcarest . loadDBProj ( token ) <EOL> ( self . xcubedim , self . ycubedim , self . zcubedim ) = self . proj . datasetcfg . cubedim [ resolution ] <EOL> ( self . startslice , self . endslice ) = self . proj . datasetcfg . slicerange <EOL> self . batchsz = self . zcubedim <EOL> self . channel = channel <EOL> self . _ximgsz = self . proj . datasetcfg . imagesz [ resolution ] [ <NUM_LIT:0> ] <EOL> self . _yimgsz = self . proj . datasetcfg . imagesz [ resolution ] [ <NUM_LIT:1> ] <EOL> self . cursor = self . db . conn . cursor ( ) <EOL> def label ( self , chanid , chanstr ) : <EOL> """<STR_LIT>""" <EOL> sql = '<STR_LIT>' . format ( chanstr , chanid ) <EOL> try : <EOL> print sql <EOL> except MySQLdb . Error , e : <EOL> print ( "<STR_LIT>" % ( e . args [ <NUM_LIT:0> ] , e . args [ <NUM_LIT:1> ] , sql ) ) <EOL> raise <EOL> def ingest ( self ) : <EOL> channel = <NUM_LIT:0> <EOL> NAME = [ "<STR_LIT>" , "<STR_LIT>" , "<STR_LIT>" ] <EOL> import pdb ; pdb . set_trace ( ) <EOL> for x in range ( self . channel ) : <EOL> self . label ( x , NAME [ x ] ) <EOL> for sl in range ( self . startslice , self . endslice + <NUM_LIT:1> , self . batchsz ) : <EOL> imarray = np . zeros ( [ self . batchsz , self . _yimgsz , self . _ximgsz ] , dtype = np . uint8 ) <EOL> for b in range ( self . batchsz ) : <EOL> if ( sl + b <= self . endslice ) : <EOL> filenm = self . path + '<STR_LIT>' . format ( sl + b ) + '<STR_LIT>' <EOL> try : <EOL> print "<STR_LIT>" + filenm <EOL> img = Image . open ( filenm , '<STR_LIT:r>' ) <EOL> imgdata = np . asarray ( img ) <EOL> imarray [ ( sl + b - self . startslice ) % self . batchsz , <NUM_LIT:0> : imgdata . shape [ <NUM_LIT:0> ] , <NUM_LIT:0> : imgdata . shape [ <NUM_LIT:1> ] ] = imgdata [ : , : , x ] <EOL> except IOError , e : <EOL> print e <EOL> self . upload ( channel , sl , imarray ) <EOL> def upload ( self , channel , sl , imarray ) : <EOL> """<STR_LIT>""" <EOL> xlimit = ( self . _ximgsz - <NUM_LIT:1> ) / self . xcubedim + <NUM_LIT:1> <EOL> ylimit = ( self . _yimgsz - <NUM_LIT:1> ) / self . ycubedim + <NUM_LIT:1> <EOL> for y in range ( ylimit ) : <EOL> for x in range ( xlimit ) : <EOL> z = sl / self . zcubedim <EOL> key = zindex . XYZMorton ( [ x , y , z ] ) <EOL> cube = imagecube . ImageCube8 ( [ self . xcubedim , self . ycubedim , self . zcubedim ] ) <EOL> cube . data = imarray [ : , y * self . ycubedim : ( y + <NUM_LIT:1> ) * self . ycubedim , x * self . xcubedim : ( x + <NUM_LIT:1> ) * self . xcubedim ] <EOL> npz = cube . toNPZ ( ) <EOL> sql = "<STR_LIT>" + self . proj . getTable ( self . resolution ) + "<STR_LIT>" <EOL> try : <EOL> print sql <EOL> except MySQLdb . Error , e : <EOL> print ( "<STR_LIT>" % ( e . args [ <NUM_LIT:0> ] , e . args [ <NUM_LIT:1> ] , sql ) ) <EOL> raise <EOL> self . db . conn . commit ( ) <EOL> def main ( ) : <EOL> parser = argparse . ArgumentParser ( description = '<STR_LIT>' ) <EOL> parser . add_argument ( '<STR_LIT>' , action = "<STR_LIT:store>" , help = '<STR_LIT>' ) <EOL> parser . add_argument ( '<STR_LIT:path>' , action = "<STR_LIT:store>" , help = '<STR_LIT>' ) <EOL> parser . add_argument ( '<STR_LIT>' , type = int , action = "<STR_LIT:store>" , help = '<STR_LIT>' ) <EOL> parser . add_argument ( '<STR_LIT>' , type = int , action = "<STR_LIT:store>" , help = '<STR_LIT>' ) <EOL> result = parser . parse_args ( ) <EOL> mit = MitraIngest ( result . token , result . path , result . resolution , result . channel ) <EOL> mit . ingest ( ) <EOL> if __name__ == "<STR_LIT:__main__>" : <EOL> main ( ) </s>
