<s> """<STR_LIT>""" <EOL> import os <EOL> import sys <EOL> import logging <EOL> from MACS2 . OptValidator import opt_validate_randsample as opt_validate <EOL> from MACS2 . Constants import * <EOL> def run ( options0 ) : <EOL> options = opt_validate ( options0 ) <EOL> info = options . info <EOL> warn = options . warn <EOL> debug = options . debug <EOL> error = options . error <EOL> if options . outputfile : <EOL> outfhd = open ( os . path . join ( options . outdir , options . outputfile ) , "<STR_LIT:w>" ) <EOL> else : <EOL> outfhd = sys . stdout <EOL> info ( "<STR_LIT>" ) <EOL> fwtrack = load_tag_files_options ( options ) <EOL> info ( "<STR_LIT>" % options . tsize ) <EOL> fwtrack . fw = options . tsize <EOL> t0 = fwtrack . total <EOL> info ( "<STR_LIT>" % ( t0 ) ) <EOL> if options . number : <EOL> if options . number > t0 : <EOL> error ( "<STR_LIT>" ) <EOL> error ( "<STR_LIT>" % ( options . number , t0 ) ) <EOL> sys . exit ( <NUM_LIT:1> ) <EOL> info ( "<STR_LIT>" % ( options . number ) ) <EOL> options . percentage = float ( options . number ) / t0 * <NUM_LIT:100> <EOL> info ( "<STR_LIT>" % ( options . percentage ) ) <EOL> if options . seed >= <NUM_LIT:0> : <EOL> info ( "<STR_LIT>" % options . seed ) <EOL> fwtrack . sample_percent ( options . percentage / <NUM_LIT> , options . seed ) <EOL> info ( "<STR_LIT>" % ( fwtrack . total ) ) <EOL> info ( "<STR_LIT>" ) <EOL> fwtrack . print_to_bed ( fhd = outfhd ) <EOL> info ( "<STR_LIT>" % options . outputfile ) <EOL> def load_tag_files_options ( options ) : <EOL> """<STR_LIT>""" <EOL> options . info ( "<STR_LIT>" ) <EOL> tp = options . parser ( options . tfile [ <NUM_LIT:0> ] ) <EOL> if not options . tsize : <EOL> ttsize = tp . tsize ( ) <EOL> options . tsize = ttsize <EOL> treat = tp . build_fwtrack ( ) <EOL> if len ( options . tfile ) > <NUM_LIT:1> : <EOL> for tfile in options . tfile [ <NUM_LIT:1> : ] : <EOL> tp = options . parser ( tfile ) <EOL> treat = tp . append_fwtrack ( treat ) <EOL> treat . finalize ( ) <EOL> options . info ( "<STR_LIT>" % options . tsize ) <EOL> return treat </s>
