<s> from PyJacobian import PyJacobian <EOL> from pysb . jacobian import JacobianGenerator <EOL> import sys , os , shutil , random , numpy , pylab <EOL> sys . path . append ( '<STR_LIT>' ) <EOL> from earm_1_0 import model <EOL> def output_handler ( icode , message ) : <EOL> pass <EOL> def input_handler ( icode , message ) : <EOL> raise Exception ( "<STR_LIT>" ) <EOL> workdir = '<STR_LIT>' % ( os . getpid ( ) , random . randint ( <NUM_LIT:0> , <NUM_LIT> ) ) <EOL> os . mkdir ( workdir ) <EOL> jac_filename = workdir + '<STR_LIT>' <EOL> gen = JacobianGenerator ( model ) <EOL> jac_file = file ( jac_filename , '<STR_LIT:w>' ) <EOL> jac_file . write ( gen . get_content ( sim_length = <NUM_LIT> ) ) <EOL> jac_file . close ( ) <EOL> pj = PyJacobian ( ) <EOL> pj . setJacobianDirectory ( all = workdir ) <EOL> pj . addOutputCallback ( output_handler ) <EOL> pj . addInputCallback ( input_handler ) <EOL> pj . loadFile ( jac_file . name ) <EOL> pj . execute ( '<STR_LIT>' ) <EOL> ts = pj . createTimeSeriesData ( ) <EOL> pj . terminate ( ) <EOL> full = numpy . memmap ( filename = ts . binfile , dtype = '<STR_LIT>' , mode = '<STR_LIT:r>' , offset = <NUM_LIT:4> , shape = ( ts . getNumData ( ) , ts . getNumVariables ( ) ) , order = '<STR_LIT:C>' ) <EOL> indices = [ ts . _getIndex ( name ) for name in ( '<STR_LIT:time>' , '<STR_LIT>' , '<STR_LIT>' , '<STR_LIT>' ) ] <EOL> a = full [ : , indices ] <EOL> last_i = numpy . searchsorted ( a [ : , <NUM_LIT:0> ] , <NUM_LIT> ) <EOL> b = a [ <NUM_LIT:0> : last_i , : ] <EOL> t = b [ : , <NUM_LIT:0> ] <EOL> y = b [ : , <NUM_LIT:1> : ] <EOL> pylab . plot ( t , y / y . max ( <NUM_LIT:0> ) ) <EOL> pylab . legend ( ( '<STR_LIT>' , '<STR_LIT>' , '<STR_LIT>' ) , loc = '<STR_LIT>' , bbox_to_anchor = ( <NUM_LIT:0> , <NUM_LIT:1> ) ) . draw_frame ( False ) <EOL> pylab . show ( ) <EOL> shutil . rmtree ( workdir ) </s>
