Commit History
Update geneformer/emb_extractor.py
f0ec9ca
verified
Update geneformer/emb_extractor.py (#350)
471eefc
verified
Add classifier module and examples
9e9cca9
Christina Theodoris
commited on
Update geneformer/emb_extractor.py (#303)
d6c634c
verified
edit docstring codeblock highlighting
d1931b1
Christina Theodoris
commited on
change doc formatting
17f036a
Christina Theodoris
commited on
add sphinx docs
2a0dcbe
Christina Theodoris
commited on
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
2f25aea
Christina Theodoris
commited on
Add option to output embs as tensor
624349c
Christina Theodoris
commited on
Add memory-efficient method for computing emb summary statistics
6caf480
Christina Theodoris
commited on
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
9169bfd
Add error message for "gene" embedding extraction under development.
65b4915
Christina Theodoris
commited on
Rename heatmap legend to be correct label
badcca6
Christina Theodoris
commited on
Add function to extract and plot cell embeddings
d154fee
Christina Theodoris
commited on