Ihor
/

Token Classification
GLiNER
PyTorch
English
NER
GLiNER
information extraction
encoder
entity recognition
biomed
Ihor commited on
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  **GLiNER** is a Named Entity Recognition (NER) model capable of identifying any entity type using a bidirectional transformer encoders (BERT-like). It provides a practical alternative to traditional NER models, which are limited to predefined entities, and Large Language Models (LLMs) that, despite their flexibility, are costly and large for resource-constrained scenarios.
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- **GLiNER-biomed**, developed in collaboration with [DS4DH](https://github.com/ds4dh) from the University of Geneva, introduces a specialized suite of efficient open biomedical NER models based on the GLiNER framework. GLiNER-biomed leverages synthetic annotations distilled from large generative biomedical language models to achieve state-of-the-art zero-shot and few-shot performance in biomedical entity recognition tasks.
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  ### How to Use
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  Install the official GLiNER library with pip:
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  | [GLiNER v2.1](https://huggingface.co/urchade/gliner_medium-v2.1) | 40.25 | 25.26 | 14.41 | 32.64 |
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  | [GLiNER news v2.1](https://huggingface.co/EmergentMethods/gliner_medium_news-v2.1) | 41.59 | 27.16 | 17.74 | 34.44 |
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  | [GLiNER v2.5](https://huggingface.co/gliner-community/gliner_base-v2.5) | 46.49 | 30.93 | 25.26 | 44.68 |
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- | **[GLiNER-biomed](https://huggingface.co/Ihor/gliner-biomed-base-v1.0)** | **54.37**| **36.20** | **41.61** | **53.05** |
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- | **[GLiNER-biomed-bi](https://huggingface.co/Ihor/gliner-biomed-bi-base-v1.0)** | 58.31 | 35.22 | 32.39 | 54.91 |
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  | **Small models** | | | | |
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  | [GLiNER v1.0](https://huggingface.co/urchade/gliner_small-v1) | 40.99 | 22.81 | 7.86 | 31.15 |
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  | [GLiNER v2.0](https://huggingface.co/urchade/gliner_small-v2) | 33.55 | 21.12 | 15.76 | 28.78 |
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  | [GLiNER v2.1](https://huggingface.co/urchade/gliner_small-v2.1) | 38.45 | 23.25 | 10.92 | 30.67 |
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  | [GLiNER news v2.1](https://huggingface.co/EmergentMethods/gliner_small_news-v2.1) | 39.15 | 24.96 | 14.48 | 33.10 |
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  | [GLiNER v2.5](https://huggingface.co/gliner-community/gliner_small-v2.5) | 38.21 | 28.53 | 18.01 | 36.88 |
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- | **[GLiNER-biomed](https://huggingface.co/Ihor/gliner-biomed-small-v1.0)** | **52.53**| **34.49** | **38.17** | **50.87** |
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- | **[GLiNER-biomed-bi](https://huggingface.co/Ihor/gliner-biomed-bi-small-v1.0)** | 56.93 | 33.88 | 33.61 | 53.12 |
 
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  ### Join Our Discord
 
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  **GLiNER** is a Named Entity Recognition (NER) model capable of identifying any entity type using a bidirectional transformer encoders (BERT-like). It provides a practical alternative to traditional NER models, which are limited to predefined entities, and Large Language Models (LLMs) that, despite their flexibility, are costly and large for resource-constrained scenarios.
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+ **GLiNER-biomed**, developed in collaboration with [DS4DH](https://www.unige.ch/medecine/radio/en/research-groups/1035teodoro) from the University of Geneva, introduces a specialized suite of efficient open biomedical NER models based on the GLiNER framework. GLiNER-biomed leverages synthetic annotations distilled from large generative biomedical language models to achieve state-of-the-art zero-shot and few-shot performance in biomedical entity recognition tasks.
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  ### How to Use
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  Install the official GLiNER library with pip:
 
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  | [GLiNER v2.1](https://huggingface.co/urchade/gliner_medium-v2.1) | 40.25 | 25.26 | 14.41 | 32.64 |
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  | [GLiNER news v2.1](https://huggingface.co/EmergentMethods/gliner_medium_news-v2.1) | 41.59 | 27.16 | 17.74 | 34.44 |
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  | [GLiNER v2.5](https://huggingface.co/gliner-community/gliner_base-v2.5) | 46.49 | 30.93 | 25.26 | 44.68 |
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+ | **[GLiNER-biomed](https://huggingface.co/Ihor/gliner-biomed-base-v1.0)** | 54.37| **36.20** | **41.61** | 53.05 |
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+ | **[GLiNER-biomed-bi](https://huggingface.co/Ihor/gliner-biomed-bi-base-v1.0)** | **58.31** | 35.22 | 32.39 | **54.91** |
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  | **Small models** | | | | |
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  | [GLiNER v1.0](https://huggingface.co/urchade/gliner_small-v1) | 40.99 | 22.81 | 7.86 | 31.15 |
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  | [GLiNER v2.0](https://huggingface.co/urchade/gliner_small-v2) | 33.55 | 21.12 | 15.76 | 28.78 |
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  | [GLiNER v2.1](https://huggingface.co/urchade/gliner_small-v2.1) | 38.45 | 23.25 | 10.92 | 30.67 |
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  | [GLiNER news v2.1](https://huggingface.co/EmergentMethods/gliner_small_news-v2.1) | 39.15 | 24.96 | 14.48 | 33.10 |
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  | [GLiNER v2.5](https://huggingface.co/gliner-community/gliner_small-v2.5) | 38.21 | 28.53 | 18.01 | 36.88 |
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+ | **[GLiNER-biomed](https://huggingface.co/Ihor/gliner-biomed-small-v1.0)** | 52.53| **34.49** | **38.17** | 50.87 |
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+ | **[GLiNER-biomed-bi](https://huggingface.co/Ihor/gliner-biomed-bi-small-v1.0)** | **56.93** | 33.88 | 33.61 | **53.12** |
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  ### Join Our Discord