| name: your_env_name | |
| channels: | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=main | |
| - _openmp_mutex=5.1=1_gnu | |
| - bzip2=1.0.8=h5eee18b_6 | |
| - ca-certificates=2024.11.26=h06a4308_0 | |
| - debugpy=1.6.7=py311h6a678d5_0 | |
| - decorator=5.1.1=pyhd3eb1b0_0 | |
| - ipykernel=6.29.5=py311h06a4308_0 | |
| - jedi=0.19.2=py311h06a4308_0 | |
| - jupyter_client=8.6.0=py311h06a4308_0 | |
| - jupyter_core=5.7.2=py311h06a4308_0 | |
| - ld_impl_linux-64=2.40=h12ee557_0 | |
| - libffi=3.4.4=h6a678d5_1 | |
| - libgcc-ng=11.2.0=h1234567_1 | |
| - libgomp=11.2.0=h1234567_1 | |
| - libsodium=1.0.18=h7b6447c_0 | |
| - libstdcxx-ng=11.2.0=h1234567_1 | |
| - libuuid=1.41.5=h5eee18b_0 | |
| - ncurses=6.4=h6a678d5_0 | |
| - nest-asyncio=1.6.0=py311h06a4308_0 | |
| - openssl=3.0.15=h5eee18b_0 | |
| - parso=0.8.4=py311h06a4308_0 | |
| - pip=24.2=py311h06a4308_0 | |
| - prompt_toolkit=3.0.43=hd3eb1b0_0 | |
| - ptyprocess=0.7.0=pyhd3eb1b0_2 | |
| - pure_eval=0.2.2=pyhd3eb1b0_0 | |
| - python=3.11.11=he870216_0 | |
| - python-dateutil=2.9.0post0=py311h06a4308_2 | |
| - pyzmq=25.1.2=py311h6a678d5_0 | |
| - readline=8.2=h5eee18b_0 | |
| - setuptools=75.1.0=py311h06a4308_0 | |
| - six=1.16.0=pyhd3eb1b0_1 | |
| - sqlite=3.45.3=h5eee18b_0 | |
| - stack_data=0.2.0=pyhd3eb1b0_0 | |
| - tk=8.6.14=h39e8969_0 | |
| - tornado=6.4.2=py311h5eee18b_0 | |
| - traitlets=5.14.3=py311h06a4308_0 | |
| - typing_extensions=4.11.0=py311h06a4308_0 | |
| - wheel=0.44.0=py311h06a4308_0 | |
| - xz=5.4.6=h5eee18b_1 | |
| - zeromq=4.3.5=h6a678d5_0 | |
| - zlib=1.2.13=h5eee18b_1 | |
| - pip: | |
| - accelerate==1.1.1 | |
| - aiobotocore==2.15.2 | |
| - aiohappyeyeballs==2.4.4 | |
| - aiohttp==3.11.9 | |
| - aioitertools==0.12.0 | |
| - aiolimiter==1.2.0 | |
| - aiosignal==1.3.1 | |
| - anndata==0.11.1 | |
| - annotated-types==0.7.0 | |
| - anthropic==0.40.0 | |
| - anyascii==0.3.2 | |
| - anyio==4.6.2.post1 | |
| - argon2-cffi==23.1.0 | |
| - argon2-cffi-bindings==21.2.0 | |
| - array-api-compat==1.9.1 | |
| - arrow==1.3.0 | |
| - asttokens==3.0.0 | |
| - async-lru==2.0.4 | |
| - attrs==24.2.0 | |
| - babel==2.16.0 | |
| - backports-tarfile==1.2.0 | |
| - beautifulsoup4==4.12.3 | |
| - biopython==1.84 | |
| - biothings-client==0.3.1 | |
| - bitarray==3.0.0 | |
| - bitsandbytes==0.44.1 | |
| - bleach==6.2.0 | |
| - blinker==1.9.0 | |
| - bm25s==0.2.5 | |
| - botocore==1.35.36 | |
| - bs4==0.0.2 | |
| - cattrs==24.1.2 | |
| - cellxgene-census==1.15.0 | |
| - certifi==2024.8.30 | |
| - cffi==1.17.1 | |
| - charset-normalizer==3.4.0 | |
| - chembl-webresource-client==0.10.9 | |
| - click==8.1.7 | |
| - colbert==0.40 | |
| - colbert-ai==0.2.21 | |
| - comm==0.2.2 | |
| - contourpy==1.3.1 | |
| - contractions==0.1.73 | |
| - cryptography==44.0.0 | |
| - cut-cross-entropy==24.11.4 | |
| - cycler==0.12.1 | |
| - dataclasses==0.6 | |
| - datasets==3.1.0 | |
| - defusedxml==0.7.1 | |
| - dill==0.3.8 | |
| - distro==1.9.0 | |
| - docker-pycreds==0.4.0 | |
| - docstring-parser==0.16 | |
| - docutils==0.21.2 | |
| - easydict==1.13 | |
| - et-xmlfile==2.0.0 | |
| - evaluate==0.4.2 | |
| - executing==2.1.0 | |
| - fastjsonschema==2.21.1 | |
| - filelock==3.13.1 | |
| - flask==3.1.0 | |
| - fonttools==4.55.1 | |
| - fqdn==1.5.1 | |
| - frozenlist==1.5.0 | |
| - fsspec==2024.2.0 | |
| - fuzzywuzzy==0.18.0 | |
| - gdown==5.2.0 | |
| - gget==0.29.0 | |
| - git-python==1.0.3 | |
| - gitdb==4.0.11 | |
| - gitpython==3.1.43 | |
| - greenlet==3.1.1 | |
| - h11==0.14.0 | |
| - h5py==3.12.1 | |
| - hf-transfer==0.1.8 | |
| - httpcore==1.0.7 | |
| - httpx==0.28.0 | |
| - huggingface-hub==0.26.3 | |
| - icalendar==6.1.0 | |
| - idna==3.10 | |
| - importlib-metadata==8.5.0 | |
| - ipython==8.30.0 | |
| - ipywidgets==8.1.5 | |
| - isoduration==20.11.0 | |
| - itsdangerous==2.2.0 | |
| - jaraco-classes==3.4.0 | |
| - jaraco-context==6.0.1 | |
| - jaraco-functools==4.1.0 | |
| - jeepney==0.8.0 | |
| - jinja2==3.1.3 | |
| - jiter==0.8.0 | |
| - jmespath==1.0.1 | |
| - joblib==1.4.2 | |
| - json5==0.10.0 | |
| - jsonpatch==1.33 | |
| - jsonpointer==3.0.0 | |
| - jsonschema==4.23.0 | |
| - jsonschema-specifications==2024.10.1 | |
| - jupyter==1.1.1 | |
| - jupyter-console==6.6.3 | |
| - jupyter-events==0.11.0 | |
| - jupyter-lsp==2.2.5 | |
| - jupyter-server==2.15.0 | |
| - jupyter-server-terminals==0.5.3 | |
| - jupyterlab==4.3.4 | |
| - jupyterlab-pygments==0.3.0 | |
| - jupyterlab-server==2.27.3 | |
| - jupyterlab-widgets==3.0.13 | |
| - keyring==25.5.0 | |
| - kiwisolver==1.4.7 | |
| - langchain==0.3.9 | |
| - langchain-core==0.3.21 | |
| - langchain-text-splitters==0.3.2 | |
| - langdetect==1.0.9 | |
| - langsmith==0.1.147 | |
| - legacy-api-wrap==1.4.1 | |
| - levenshtein==0.26.1 | |
| - lightning-utilities==0.11.9 | |
| - littleutils==0.2.4 | |
| - llvmlite==0.43.0 | |
| - lxml==5.3.0 | |
| - markdown-it-py==3.0.0 | |
| - markupsafe==2.1.5 | |
| - matplotlib==3.9.3 | |
| - matplotlib-inline==0.1.7 | |
| - matplotlib-venn==1.1.1 | |
| - mdurl==0.1.2 | |
| - mistune==3.1.1 | |
| - moleculeace==3.0.0 | |
| - more-itertools==10.5.0 | |
| - mpmath==1.3.0 | |
| - multidict==6.1.0 | |
| - multiprocess==0.70.16 | |
| - mygene==3.2.2 | |
| - mysql-connector-python==9.1.0 | |
| - natsort==8.4.0 | |
| - nbclient==0.10.2 | |
| - nbconvert==7.16.6 | |
| - nbformat==5.10.4 | |
| - networkx==3.2.1 | |
| - nh3==0.2.19 | |
| - ninja==1.11.1.2 | |
| - nltk==3.9.1 | |
| - notebook==7.3.2 | |
| - notebook-shim==0.2.4 | |
| - numba==0.60.0 | |
| - numpy==1.26.4 | |
| - nvidia-cublas-cu12==12.4.5.8 | |
| - nvidia-cuda-cupti-cu12==12.4.127 | |
| - nvidia-cuda-nvrtc-cu12==12.4.127 | |
| - nvidia-cuda-runtime-cu12==12.4.127 | |
| - nvidia-cudnn-cu12==9.1.0.70 | |
| - nvidia-cufft-cu12==11.2.1.3 | |
| - nvidia-curand-cu12==10.3.5.147 | |
| - nvidia-cusolver-cu12==11.6.1.9 | |
| - nvidia-cusparse-cu12==12.3.1.170 | |
| - nvidia-nccl-cu12==2.21.5 | |
| - nvidia-nvjitlink-cu12==12.4.127 | |
| - nvidia-nvtx-cu12==12.4.127 | |
| - ogb==1.3.6 | |
| - openai==1.56.1 | |
| - openpyxl==3.1.5 | |
| - orjson==3.10.12 | |
| - outdated==0.2.2 | |
| - overrides==7.7.0 | |
| - packaging==24.2 | |
| - pandas==2.2.3 | |
| - pandocfilters==1.5.1 | |
| - patsy==1.0.1 | |
| - peft==0.13.2 | |
| - pexpect==4.9.0 | |
| - pillow==10.2.0 | |
| - pkginfo==1.12.0 | |
| - platformdirs==4.3.6 | |
| - prometheus-client==0.21.1 | |
| - prompt-toolkit==3.0.48 | |
| - propcache==0.2.1 | |
| - protobuf==3.20.3 | |
| - psutil==6.1.0 | |
| - pure-eval==0.2.3 | |
| - pyahocorasick==2.1.0 | |
| - pyaml==24.9.0 | |
| - pyarrow==18.1.0 | |
| - pyarrow-hotfix==0.6 | |
| - pycparser==2.22 | |
| - pydantic==2.10.3 | |
| - pydantic-core==2.27.1 | |
| - pygments==2.18.0 | |
| - pynndescent==0.5.13 | |
| - pyparsing==3.2.0 | |
| - pysocks==1.7.1 | |
| - pytdc==1.1.1 | |
| - python-dotenv==1.0.1 | |
| - python-json-logger==3.2.1 | |
| - python-levenshtein==0.26.1 | |
| - pytz==2024.2 | |
| - pyyaml==6.0.2 | |
| - rapidfuzz==3.10.1 | |
| - rdkit==2023.9.6 | |
| - rdkit-pypi==2022.9.5 | |
| - readme-renderer==44.0 | |
| - referencing==0.36.2 | |
| - regex==2024.11.6 | |
| - requests==2.32.3 | |
| - requests-cache==1.2.1 | |
| - requests-toolbelt==1.0.0 | |
| - rfc3339-validator==0.1.4 | |
| - rfc3986==2.0.0 | |
| - rfc3986-validator==0.1.1 | |
| - rich==13.9.4 | |
| - rpds-py==0.22.3 | |
| - s3fs==2024.2.0 | |
| - safetensors==0.4.5 | |
| - scanpy==1.10.4 | |
| - scikit-learn==1.2.2 | |
| - scikit-optimize==0.10.2 | |
| - scipy==1.14.1 | |
| - seaborn==0.13.2 | |
| - secretstorage==3.3.3 | |
| - send2trash==1.8.3 | |
| - sentence-transformers==3.3.1 | |
| - sentencepiece==0.2.0 | |
| - sentry-sdk==2.19.0 | |
| - session-info==1.0.0 | |
| - setproctitle==1.3.4 | |
| - shtab==1.7.1 | |
| - smmap==5.0.1 | |
| - sniffio==1.3.1 | |
| - somacore==1.0.11 | |
| - soupsieve==2.6 | |
| - sqlalchemy==2.0.36 | |
| - stack-data==0.6.3 | |
| - statsmodels==0.14.4 | |
| - stdlib-list==0.11.0 | |
| - sympy==1.13.1 | |
| - tenacity==9.0.0 | |
| - terminado==0.18.1 | |
| - textsearch==0.0.24 | |
| - threadpoolctl==3.5.0 | |
| - tiledb==0.29.1 | |
| - tiledbsoma==1.11.4 | |
| - tinycss2==1.4.0 | |
| - tokenizers==0.20.3 | |
| - torch==2.5.1+cu124 | |
| - torch-geometric==2.6.1 | |
| - torch-scatter==2.1.2+pt25cu124 | |
| - torchaudio==2.5.1+cu124 | |
| - torchmetrics==1.6.0 | |
| - torchvision==0.20.1+cu124 | |
| - tqdm==4.67.1 | |
| - transformers==4.46.3 | |
| - triton==3.1.0 | |
| - trl==0.12.1 | |
| - twine==6.0.1 | |
| - typeguard==4.4.1 | |
| - types-python-dateutil==2.9.0.20241206 | |
| - typing-extensions==4.12.2 | |
| - tyro==0.9.2 | |
| - tzdata==2024.2 | |
| - ujson==5.10.0 | |
| - umap-learn==0.5.7 | |
| - unsloth==2025.1.8 | |
| - unsloth-zoo==2025.1.5 | |
| - uri-template==1.3.0 | |
| - url-normalize==1.4.3 | |
| - urllib3==2.2.3 | |
| - voyageai==0.3.2 | |
| - wandb==0.18.7 | |
| - wcwidth==0.2.13 | |
| - webcolors==24.11.1 | |
| - webencodings==0.5.1 | |
| - websocket-client==1.8.0 | |
| - werkzeug==3.1.3 | |
| - widgetsnbextension==4.0.13 | |
| - wrapt==1.17.0 | |
| - xformers==0.0.28.post3 | |
| - xxhash==3.5.0 | |
| - yapf==0.43.0 | |
| - yarl==1.18.3 | |
| - zipp==3.21.0 | |
| prefix: /home/yongjia/.conda/envs/g_traversal | |