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name: your_env_name
channels:
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- bzip2=1.0.8=h5eee18b_6
- ca-certificates=2024.11.26=h06a4308_0
- debugpy=1.6.7=py311h6a678d5_0
- decorator=5.1.1=pyhd3eb1b0_0
- ipykernel=6.29.5=py311h06a4308_0
- jedi=0.19.2=py311h06a4308_0
- jupyter_client=8.6.0=py311h06a4308_0
- jupyter_core=5.7.2=py311h06a4308_0
- ld_impl_linux-64=2.40=h12ee557_0
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=1.41.5=h5eee18b_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=py311h06a4308_0
- openssl=3.0.15=h5eee18b_0
- parso=0.8.4=py311h06a4308_0
- pip=24.2=py311h06a4308_0
- prompt_toolkit=3.0.43=hd3eb1b0_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- python=3.11.11=he870216_0
- python-dateutil=2.9.0post0=py311h06a4308_2
- pyzmq=25.1.2=py311h6a678d5_0
- readline=8.2=h5eee18b_0
- setuptools=75.1.0=py311h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.45.3=h5eee18b_0
- stack_data=0.2.0=pyhd3eb1b0_0
- tk=8.6.14=h39e8969_0
- tornado=6.4.2=py311h5eee18b_0
- traitlets=5.14.3=py311h06a4308_0
- typing_extensions=4.11.0=py311h06a4308_0
- wheel=0.44.0=py311h06a4308_0
- xz=5.4.6=h5eee18b_1
- zeromq=4.3.5=h6a678d5_0
- zlib=1.2.13=h5eee18b_1
- pip:
- accelerate==1.1.1
- aiobotocore==2.15.2
- aiohappyeyeballs==2.4.4
- aiohttp==3.11.9
- aioitertools==0.12.0
- aiolimiter==1.2.0
- aiosignal==1.3.1
- anndata==0.11.1
- annotated-types==0.7.0
- anthropic==0.40.0
- anyascii==0.3.2
- anyio==4.6.2.post1
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- array-api-compat==1.9.1
- arrow==1.3.0
- asttokens==3.0.0
- async-lru==2.0.4
- attrs==24.2.0
- babel==2.16.0
- backports-tarfile==1.2.0
- beautifulsoup4==4.12.3
- biopython==1.84
- biothings-client==0.3.1
- bitarray==3.0.0
- bitsandbytes==0.44.1
- bleach==6.2.0
- blinker==1.9.0
- bm25s==0.2.5
- botocore==1.35.36
- bs4==0.0.2
- cattrs==24.1.2
- cellxgene-census==1.15.0
- certifi==2024.8.30
- cffi==1.17.1
- charset-normalizer==3.4.0
- chembl-webresource-client==0.10.9
- click==8.1.7
- colbert==0.40
- colbert-ai==0.2.21
- comm==0.2.2
- contourpy==1.3.1
- contractions==0.1.73
- cryptography==44.0.0
- cut-cross-entropy==24.11.4
- cycler==0.12.1
- dataclasses==0.6
- datasets==3.1.0
- defusedxml==0.7.1
- dill==0.3.8
- distro==1.9.0
- docker-pycreds==0.4.0
- docstring-parser==0.16
- docutils==0.21.2
- easydict==1.13
- et-xmlfile==2.0.0
- evaluate==0.4.2
- executing==2.1.0
- fastjsonschema==2.21.1
- filelock==3.13.1
- flask==3.1.0
- fonttools==4.55.1
- fqdn==1.5.1
- frozenlist==1.5.0
- fsspec==2024.2.0
- fuzzywuzzy==0.18.0
- gdown==5.2.0
- gget==0.29.0
- git-python==1.0.3
- gitdb==4.0.11
- gitpython==3.1.43
- greenlet==3.1.1
- h11==0.14.0
- h5py==3.12.1
- hf-transfer==0.1.8
- httpcore==1.0.7
- httpx==0.28.0
- huggingface-hub==0.26.3
- icalendar==6.1.0
- idna==3.10
- importlib-metadata==8.5.0
- ipython==8.30.0
- ipywidgets==8.1.5
- isoduration==20.11.0
- itsdangerous==2.2.0
- jaraco-classes==3.4.0
- jaraco-context==6.0.1
- jaraco-functools==4.1.0
- jeepney==0.8.0
- jinja2==3.1.3
- jiter==0.8.0
- jmespath==1.0.1
- joblib==1.4.2
- json5==0.10.0
- jsonpatch==1.33
- jsonpointer==3.0.0
- jsonschema==4.23.0
- jsonschema-specifications==2024.10.1
- jupyter==1.1.1
- jupyter-console==6.6.3
- jupyter-events==0.11.0
- jupyter-lsp==2.2.5
- jupyter-server==2.15.0
- jupyter-server-terminals==0.5.3
- jupyterlab==4.3.4
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.27.3
- jupyterlab-widgets==3.0.13
- keyring==25.5.0
- kiwisolver==1.4.7
- langchain==0.3.9
- langchain-core==0.3.21
- langchain-text-splitters==0.3.2
- langdetect==1.0.9
- langsmith==0.1.147
- legacy-api-wrap==1.4.1
- levenshtein==0.26.1
- lightning-utilities==0.11.9
- littleutils==0.2.4
- llvmlite==0.43.0
- lxml==5.3.0
- markdown-it-py==3.0.0
- markupsafe==2.1.5
- matplotlib==3.9.3
- matplotlib-inline==0.1.7
- matplotlib-venn==1.1.1
- mdurl==0.1.2
- mistune==3.1.1
- moleculeace==3.0.0
- more-itertools==10.5.0
- mpmath==1.3.0
- multidict==6.1.0
- multiprocess==0.70.16
- mygene==3.2.2
- mysql-connector-python==9.1.0
- natsort==8.4.0
- nbclient==0.10.2
- nbconvert==7.16.6
- nbformat==5.10.4
- networkx==3.2.1
- nh3==0.2.19
- ninja==1.11.1.2
- nltk==3.9.1
- notebook==7.3.2
- notebook-shim==0.2.4
- numba==0.60.0
- numpy==1.26.4
- nvidia-cublas-cu12==12.4.5.8
- nvidia-cuda-cupti-cu12==12.4.127
- nvidia-cuda-nvrtc-cu12==12.4.127
- nvidia-cuda-runtime-cu12==12.4.127
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.2.1.3
- nvidia-curand-cu12==10.3.5.147
- nvidia-cusolver-cu12==11.6.1.9
- nvidia-cusparse-cu12==12.3.1.170
- nvidia-nccl-cu12==2.21.5
- nvidia-nvjitlink-cu12==12.4.127
- nvidia-nvtx-cu12==12.4.127
- ogb==1.3.6
- openai==1.56.1
- openpyxl==3.1.5
- orjson==3.10.12
- outdated==0.2.2
- overrides==7.7.0
- packaging==24.2
- pandas==2.2.3
- pandocfilters==1.5.1
- patsy==1.0.1
- peft==0.13.2
- pexpect==4.9.0
- pillow==10.2.0
- pkginfo==1.12.0
- platformdirs==4.3.6
- prometheus-client==0.21.1
- prompt-toolkit==3.0.48
- propcache==0.2.1
- protobuf==3.20.3
- psutil==6.1.0
- pure-eval==0.2.3
- pyahocorasick==2.1.0
- pyaml==24.9.0
- pyarrow==18.1.0
- pyarrow-hotfix==0.6
- pycparser==2.22
- pydantic==2.10.3
- pydantic-core==2.27.1
- pygments==2.18.0
- pynndescent==0.5.13
- pyparsing==3.2.0
- pysocks==1.7.1
- pytdc==1.1.1
- python-dotenv==1.0.1
- python-json-logger==3.2.1
- python-levenshtein==0.26.1
- pytz==2024.2
- pyyaml==6.0.2
- rapidfuzz==3.10.1
- rdkit==2023.9.6
- rdkit-pypi==2022.9.5
- readme-renderer==44.0
- referencing==0.36.2
- regex==2024.11.6
- requests==2.32.3
- requests-cache==1.2.1
- requests-toolbelt==1.0.0
- rfc3339-validator==0.1.4
- rfc3986==2.0.0
- rfc3986-validator==0.1.1
- rich==13.9.4
- rpds-py==0.22.3
- s3fs==2024.2.0
- safetensors==0.4.5
- scanpy==1.10.4
- scikit-learn==1.2.2
- scikit-optimize==0.10.2
- scipy==1.14.1
- seaborn==0.13.2
- secretstorage==3.3.3
- send2trash==1.8.3
- sentence-transformers==3.3.1
- sentencepiece==0.2.0
- sentry-sdk==2.19.0
- session-info==1.0.0
- setproctitle==1.3.4
- shtab==1.7.1
- smmap==5.0.1
- sniffio==1.3.1
- somacore==1.0.11
- soupsieve==2.6
- sqlalchemy==2.0.36
- stack-data==0.6.3
- statsmodels==0.14.4
- stdlib-list==0.11.0
- sympy==1.13.1
- tenacity==9.0.0
- terminado==0.18.1
- textsearch==0.0.24
- threadpoolctl==3.5.0
- tiledb==0.29.1
- tiledbsoma==1.11.4
- tinycss2==1.4.0
- tokenizers==0.20.3
- torch==2.5.1+cu124
- torch-geometric==2.6.1
- torch-scatter==2.1.2+pt25cu124
- torchaudio==2.5.1+cu124
- torchmetrics==1.6.0
- torchvision==0.20.1+cu124
- tqdm==4.67.1
- transformers==4.46.3
- triton==3.1.0
- trl==0.12.1
- twine==6.0.1
- typeguard==4.4.1
- types-python-dateutil==2.9.0.20241206
- typing-extensions==4.12.2
- tyro==0.9.2
- tzdata==2024.2
- ujson==5.10.0
- umap-learn==0.5.7
- unsloth==2025.1.8
- unsloth-zoo==2025.1.5
- uri-template==1.3.0
- url-normalize==1.4.3
- urllib3==2.2.3
- voyageai==0.3.2
- wandb==0.18.7
- wcwidth==0.2.13
- webcolors==24.11.1
- webencodings==0.5.1
- websocket-client==1.8.0
- werkzeug==3.1.3
- widgetsnbextension==4.0.13
- wrapt==1.17.0
- xformers==0.0.28.post3
- xxhash==3.5.0
- yapf==0.43.0
- yarl==1.18.3
- zipp==3.21.0
prefix: /home/yongjia/.conda/envs/g_traversal
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