---
library_name: transformers
license: apache-2.0
base_model: bert-base-uncased
tags:
- generated_from_trainer
datasets:
- biobert_json
metrics:
- precision
- recall
- f1
- accuracy
model-index:
- name: bert-base-uncased-biobert
  results:
  - task:
      name: Token Classification
      type: token-classification
    dataset:
      name: biobert_json
      type: biobert_json
      config: Biobert_json
      split: validation
      args: Biobert_json
    metrics:
    - name: Precision
      type: precision
      value: 0.9400370317618573
    - name: Recall
      type: recall
      value: 0.970873786407767
    - name: F1
      type: f1
      value: 0.9552065996092336
    - name: Accuracy
      type: accuracy
      value: 0.9768401312705111
---

<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->

# bert-base-uncased-biobert

This model is a fine-tuned version of [bert-base-uncased](https://huggingface.co/bert-base-uncased) on the biobert_json dataset.
It achieves the following results on the evaluation set:
- Loss: 0.0999
- Precision: 0.9400
- Recall: 0.9709
- F1: 0.9552
- Accuracy: 0.9768

## Model description

More information needed

## Intended uses & limitations

More information needed

## Training and evaluation data

More information needed

## Training procedure

### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 16
- eval_batch_size: 16
- seed: 42
- optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
- lr_scheduler_type: linear
- num_epochs: 5

### Training results

| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
| 0.4627        | 1.0   | 612  | 0.1159          | 0.9268    | 0.9554 | 0.9409 | 0.9701   |
| 0.1413        | 2.0   | 1224 | 0.1089          | 0.9274    | 0.9722 | 0.9493 | 0.9734   |
| 0.0953        | 3.0   | 1836 | 0.0993          | 0.9400    | 0.9684 | 0.9540 | 0.9767   |
| 0.0746        | 4.0   | 2448 | 0.0983          | 0.9399    | 0.9714 | 0.9554 | 0.9768   |
| 0.054         | 5.0   | 3060 | 0.0999          | 0.9400    | 0.9709 | 0.9552 | 0.9768   |


### Framework versions

- Transformers 4.46.2
- Pytorch 2.5.1+cu121
- Datasets 3.1.0
- Tokenizers 0.20.3